LOC103025471 (LOC103025471,LOC108430308)


Basic Information

Item Value
gene id LOC103025471
gene name LOC103025471,LOC108430308
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26691485 ~ 26701609 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247213.3
GGAGAGGAGGCAGAGAGCTGTCCACTGTGACACAGGAGGAAGACTTTAGTGTCTCCTCACCATGAGCCCACGCAGAGAGGTCGAGCCGCGTGCGGGACGCGCTGTTTCTCCGTGCGTAAAACTCGCGTAGAGCTTGGAGGCGTTCAGGGAGCGCGAACATGCTGCGCCCGAGCGCCTGATGGAGCTTCATTCTCCAAACCTACAGGACACAGCAAAGCAAGGCACGCGAGACCCGAGACCACCCCCAGCAGAAtgaacaacagcagcagcgttagcagCGCGAGCTCCGTCCCGCGGCGCATGGAGCCCACCATCCCGGTGGTGATGTTCATCTTCGGCGTGGTGAGTAATGTCATCGCCATCGTGGTGCTGTGCAAGTCGCGGCGCGAGCAGAAGGAGAGCGCCTTCTACACGCTCGTGTGCGGCCTGGCCGTTACCGACCTCCTCGGCACGGTGCTGGCCAGTCCCGTGACCATCGTGACCTATGTGAAAGGCGCGTGGCCGGCCGGGGACGCGCTGTGCCAGTATTTCGGCGTGGTGCTGCTGTTCTTCTCGCTGGCCGGACTCAGCATCATCTGCGCCATGTCCGTAGAGCGCTACGCGGCCATCAACCACGCGTACTTCTACAACCACTGCGTGGACCGGCGGCTCGCGGCGCTCACGCTGCTCGCCATCTACGCGTCCAACGCGCTGTTCTGCGCGCTGCCCACGCTGGGCTTCGGCGAGGTGAAGATGCAGTACCCGCAGACCTGGTGCTTTATCGACTGGAGGACGAACGTCAGCAGCCACGCGGCTTTCTCCTACATGTACGCGGGCGTCAGCTCCGTGCTCGTGCTCTGTACCGTGGCTTGCAACGTGCTGGTGTGCGGCGCGCTCGTGGCCATGCACCGCAGGCTCGTGCGCAGAACCTCGCTGGGCACGGACCAGGGCAGGGCGGCGGAGCTGGGCAGGAGGAGGCTGGCCGGTGCTGAGATCCAGATGGTCATCCTGCTCATCGCCACGTCCGCCGTGGTGCTCATCTGCTCCATCCCAATGGTCGTACAAGTGTTTGTCAATCAGATGTACAAAGTTCCAGTGGAAAAGAGGTTGGACAAAAACCCAGATCTTCTGGCCGTCAGGTTTGCCTCCACCAACCCCATTCTAGACCCGTGGATCTACATCCTACTGAGGAAATCGGTGCTCCAGAAACTCATAGAAAACATCAAGTGCTTGTTCTGCAAGATTGGTGCACGGGGACAACAAAGACCAGGACCCTTCCCCTGTGTAGAGGGCCAGCAGGTTTCCTCTATCATGTCCAGAGAGTCTCCTTCACTCGTGTCTCATGACCTGAGGGAGGTCACGAGCACCTCCCAGACTCTCCTCTATCTCCCTGAAGCCAACGAGATATACCTAGGCACATGCCATTCCAGCCAGTGTGGCTCCTGCCCTTCTGTAGGCCACTCCTCCAAAGACCTCAGTTCAGAATCCTCCAACAGGAGCAGTCTAAACAGCGAGGCAGCGACGTGTCCGAACGTTAGCCCCATGAACAATGCTCCTGAGGATTCTTCCTCTAAAGACCAATCTCTTCAAGTGACTTTAACCAATGTGACATTCCAAGAGAAAAGTATTTAGTGCCTCACTGGACGTTTCTGCCAAAATCAAACCTTTTTTTACAATTTCCCCTCATTCCGAACACAGTCGATCAGCCAGGACAAACGAATGGACTTATAACCAATTAGCTCTGCTTAAACTTCAAGCctaaatcatgtttttaaaaCCACGTTGAGTTTGGTACTTAGGAAGACATATTCTTTCCTAGAAAAAATGGACAATATATGTAATGCATATAAAGCAAATCAAGCAATCTTGAAGCCTGAATTTTGTCTCTATTTTTTAGGAAAAAGTCCCAAATGCTTTGGGTTTAAAACATAAAccaattctgtaaaaaaaaattaaaaaatcagaaatttcttttgctaaaatttTGATTATTTGAGTTGGAAGTATGGACACTGTTGTTCCATTTTCTTCCATACTAAAGAAATTAATCCCAAAATGTCTGCCATGTTGTAAAATTTGCAATCTGTGCCTGTGGAGTACAGACCAGAGGTGGAGCCAGACTTACCAACTCATTGGGCAGACCCACCCCCTTCTCACAGACCCATTGTCTCAGACcgcctttattgagtttacagcaGAGCCTAAAAGAACAACAGCAAAATGAATTTTCTACTGGATGCTCAGTTCATCCAGTAAGTGTAATATTGAGAGTTTCATTGAGCTAAACacaaataacagtttttaaaattgttaaaagttACACTCCAGATTTGATtgggaataaaaaataaaataaaacaacatttaaaatcagTCCTGTTAGATGTCCGCCAAAggtataaatatacaaaattgaATCACTTTATTTGTAACAAGTTCTTTACAATAACAGGTACATTAACAGGAAAGTGTGTCTTCAGTTCTCTTAGTTTagtaatgtatttaaatgtttgtgaaGTCTATATTTTCAGATAGACAATCATACTTATTTAAATTCAGCCTGGCAGATCGACTACATTTGGTACAAGGGTAAAATTgcataaaaatacatactttGAGGCATTAGCAACCCTACAGTCTACCATTAACACAAATCAATCCACAAACAGCTACAAtagtgcattttttaaataattgctgATAATAACAAAATAGCCAAAATATTTCATGTAAGTAAAAATGAGGCCATGGGTTGATATTGAATCAAAGTATGTATTTAAGGGTTACAATTCATTCAAAAAATGCTTTTGTACTGTTGTATCACTATATAGTAACTGTGaaattttgttgtgtttttttattcagtgctcTATGACTTTCTGACCCACAGCACTTGCAGTGTCAATAGCCAACAAAGTCCTCATTTCAAGTTCTGCTGTCTgatttattttgaaaatgttatAGCTGTACGCTTCCGGACGCTTTTGGACACTGATAAACTCTTTTCATGACTGTAGAACTTGTGCTGCAGAAGTACGCTTTGTGAGCCACGTAAGTAGCCTATCCGTAGCATTTCTCAAAGGATATTTAGGAGTGGTCGGGTCAGGTTCATTGAAgtctttgctaaaaaaaaacctctccAAACTAGCCCTGCACGATCTACAGTGAGGACATGTTTGTTTTTCCAGCAGGGTTCAAACTGGTCACATCACGATCAACAGCAAACCACGCAGGAAATAACCTTGCAGAAGATGTTTTCCTTTAAATGTTGGAGTGGCAGCGTTTGAGAACATCCTACTTCCCAACCAACTGTTATCTTTtctagtgaataaataaatgtgatctGCAGCGCGACCCgaattaaaagtatttaagcCTCAATAAGCATTTTGATGGCTGGACAAA

Function

NR:

description
prostaglandin E2 receptor EP4 subtype-like

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0016020 membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG:

id description
K04261 PTGER4; prostaglandin E receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247213.3 True 3384 mRNA 0.47 2 26691485 26701609

Neighbor

gene id symbol gene type direction distance location
mrps27 mrps27 coding upstream 11168 26671956 ~ 26680317 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding upstream 27543 26656800 ~ 26663942 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding upstream 50617 26618889 ~ 26640868 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding upstream 134513 26553297 ~ 26556972 (+)
aaed1 aaed1 coding upstream 157409 26530308 ~ 26534076 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding downstream 11451 26713060 ~ 26760226 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding downstream 82611 26784220 ~ 26796027 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding downstream 95702 26797311 ~ 26810688 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding downstream 117972 26819581 ~ 26861864 (+)
LOC103022969 LOC108430342 coding downstream 273323 26974932 ~ 27018977 (+)
G54614 NA non-coding upstream 10151 26681094 ~ 26681334 (+)
G54611 NA non-coding upstream 10407 26680631 ~ 26681078 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding upstream 47732 26641697 ~ 26643753 (+)
G54529 NA non-coding upstream 595120 26094352 ~ 26096365 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 875740 25815416 ~ 25815745 (+)
G54673 NA non-coding downstream 234321 26935930 ~ 26968187 (+)
G54680 NA non-coding downstream 244203 26945812 ~ 26946875 (+)
G54683 NA non-coding downstream 267754 26969363 ~ 26970882 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding downstream 317452 27019061 ~ 27020194 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding downstream 344537 27046146 ~ 27049083 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 139915 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1141991 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1582614 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2400720 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 4769891 21919225 ~ 21921594 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 261283 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 318635 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 331226 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 509693 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 962173 27663782 ~ 27668662 (+)

Expression


Co-expression Network