mrps27 (mrps27)



Basic Information


Item Value
gene id mrps27
gene name mrps27
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26671956 ~ 26680317 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007247214.3
CCCCTGCTGGAGGAGGGAGATGGTAGGACCCGATCATGGCGGCCTCCGTACTGCAGCGCTTTCTCCTGCCGGTCAGAACTGCGGGGAAAATCTCCGCTCACAGAGAAACAGGTAGAAGATGTCTACTTTCAGCAGcatacacagacacaaaagTGTGGGAACAAAGACAAACTGAGCCTCAAAGCCTTGGTGAGTTGGCCTCCTTAATGGACAGATCTTATGAGAGAAAGTTTCCAGTCAGTTCTCTCACAATATCTCGGACTGTAGACTGTATATCTTCAAAAGAGGAAATCGATCAAACTGAATACTACCTATACAAGTTTCgccacagtccaaactgctggTATCTCCGAGACTGGACTGTCCACAGCTGGTTCAGACAGTGTCTTAAACATGGAGCCAGAGAAAAAGCCATACATACACTCAAGAACAAGGTGCAATTTGGGATGTTCCCAGATGAGTTCACCTTCAATCTTCTGATCGACTCTTACCTAAAAGATAAAGACTACAAGGGAGCCTGCTCGGTTGTTGAGGAGGTGATGCTTCAGGAAGCTTTTACCCAGCCCACAACACAGATAGTATCACTATTCGCCCTGAGCaaatacttggcaaccaagCCTGACCTCAGCtggCAGGAAGAGAGGAACGTGGGAGCAGCTCTTATGCTGGCTGGACTGGAGCAGGAGAACTCTGTTGGCATTAGTGCTCAGTTACTGGGCCATGCACTTATTGGTAAGGTGGAGATGGCCAGAGGAATACATGTTGTGTTTCACCAGATGCCCTTGATCTGGACTCCAGGCTACCTTGGCCGATCGCTGGCTGTtatggagagagtgtgcacTGATACTGGGGATTTGAAATTGTCTACAGAAGTGCTTGATTACTTGCAAACCATACTACAGGAGCTCTCTTCCACTCCTTCTGAAACAGCGGAGGAGAACACTGCCGAAAACCAGGCTGATGACAGCATAGATGAGGAGGATGAGCTTGAAAGAGCTAAATTACCACAGTACACAGCTAAGTTTAAGGAGCTGAGGGAGCAGCTACAGGCTCAGGGCAAGGAGGACTCCAGCAGTCTGGAGGCTCTTACATCCAACCTGGCACAGGAGAAGCTGAGTGCCTTCGAGCAGCTGGACGTAGCCGAGTACCAGAAGCGGGTGCAGGACTGGGAggctgagcgccggcagctggtcgagagagagaaagagatgagagagaaagcTGAACAGGAGCGTCTGGCCAGGCAAGCGGCCAGGCAAGCCGCCCAGTAGCGTGCCAAACGTGGGCACGGCTACAGGCAGCCGAGAGCTATtgtctttttgtgtttattgtgttagGTCGAGTAAACTGAACTTGagattgtgtctgtgtgtatttctttttctctttttttcctcgaTCGTAAGTCTGCACTGTATAAATAAACCCCCAAATATTCGTCAACTGTCA

Function


symbol description
mrps27 Predicted to be active in mitochondrion. Is expressed in several structures, including head; immature eye; neural plate; pectoral fin bud; and segmental plate. Orthologous to human MRPS27 (mitochondrial ribosomal protein S27).

NR:

description
28S ribosomal protein S27, mitochondrial-like

GO: NA

KEGG:

id description
K17406 MRPS27; small subunit ribosomal protein S27

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007247214.3 True 1449 mRNA 0.50 11 26671956 26680317

Neighbor


gene id symbol gene type direction distance location
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding upstream 8014 26656800 ~ 26663942 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding upstream 31088 26618889 ~ 26640868 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding upstream 114984 26553297 ~ 26556972 (+)
aaed1 aaed1 coding upstream 137880 26530308 ~ 26534076 (+)
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding upstream 1020653 25642306 ~ 25651303 (+)
LOC103025471 LOC103025471,LOC108430308 coding downstream 11168 26691485 ~ 26701609 (+)
LOC103031601 loxhd1b,loxhd1,LOC108265797,LOC108233688 coding downstream 32743 26713060 ~ 26760226 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding downstream 103903 26784220 ~ 26796027 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding downstream 116994 26797311 ~ 26810688 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding downstream 139264 26819581 ~ 26861864 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding upstream 28203 26641697 ~ 26643753 (+)
G54529 NA non-coding upstream 575591 26094352 ~ 26096365 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 856211 25815416 ~ 25815745 (+)
G54499 NA non-coding upstream 874979 25777094 ~ 25796977 (+)
G54489 NA non-coding upstream 943359 25728383 ~ 25728597 (+)
G54611 NA non-coding downstream 314 26680631 ~ 26681078 (+)
G54614 NA non-coding downstream 777 26681094 ~ 26681334 (+)
G54673 NA non-coding downstream 255613 26935930 ~ 26968187 (+)
G54680 NA non-coding downstream 265495 26945812 ~ 26946875 (+)
G54683 NA non-coding downstream 289046 26969363 ~ 26970882 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 120386 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1122462 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1563085 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2381191 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 4750362 21919225 ~ 21921594 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 282575 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 339927 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 352518 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 530985 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 983465 27663782 ~ 27668662 (+)

Expression



Co-expression Network