LOC103026801 (LOC103026801,LOC108414620,LOC107756851,LOC107702881,LOC107573971,LOC107691553,LOC107566963,LOC108265407)


Basic Information

Item Value
gene id LOC103026801
gene name LOC103026801,LOC108414620,LOC107756851,LOC107702881,LOC107573971,LOC107691553,LOC107566963,LOC108265407
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40619650 ~ 40627651 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247900.3
TTTCCCACCCGGAGGCGTGTACTGGCATTTCCGCCCTGAGGGGGCGCTGTGGACCCTCACAGTCCACCAATCAAACGTCAGAGGCCTGAAGACGGAAGCTCGGCTACAGCAGCATCAACAATCCCGACAGGGAGCGAGCGGTCAGCGGTCAGACAGGAACCATTTTAACGGGTTTAACTCAGAAACCCTGAGACTTTAGGGGCGCTGCGGACATGTCGGTGTTCGGGAAGCTGTTTGGTGGCGGAGGGAAGGCGGGGAAAGCCGCGACCCCGCAGGAGGCGATCCAGAAGCTCCGGGAGACGGAGGCGATGTTGACCAAAAAGCAGGAGTTCCTGGAGCAGAAGATCTCGGCCGAGCTGCTGACGGCCAAGAAGAACGGCACCAAAAACAAACGAGCTGCTCTTCAGGCCCTGAAGAGAAAGAAGCGCTACGAAAAGCAGCTAGCTCAGATTGATGGCACTCTGTCTACCATCGAGTTCCAGCGGGAGGCTTTGGAAAATGCCAACACTAACACAGAAGTGCTCAAAAACATGGGCTTCGCAGCCAAGGCCATGAAGAATGCTCATCAGAACATGGACATAGACAAAGTAGATGACCTTATGCAAGACATTACTGAACAGCAGGAGCTGGCTCAGGAAATCTCAGATGCCATTTCTAAGCCTGTTGGCTTTGGAGAAGAGTTTGATGAGGACGAGTTGATGGCTGAACTGGAGGAGCTGGAACAGGAGGAACTGGACAATACCCTGCTGGAAATTGGTGGCACAGAAAATGTACCGCTGCCCAGCGTGCCTTCCACCTCATTACCCTCCAAACCGAccaagaagagagaggaagaggatgaagaCGACATGGAAGAGCTGAAGGCATGGGCGATGTAAATCCAGCCTAAGCTGCCAAACTACCGGACTGTCTTATCACTTGATATGGTTGAAGGATGTTCAGAGTGGACCTGAACACCTTCAGAGGGTTAATGTTGAGAAGCCACATGTCTAGGAAGCTGTAGCTCTTGTtacttggtaaaaaaaaaaaaaaaacaccaggaaCACAGGGGCTACCCAGGCAAAGGGATGTGAAACTATggaagacaagacaaaacaaaacaaagaacaataataacaatcagTCAAAATTTTATCTGCGAAAAGCCCCCCGATGGTCATCTATGATTGACATTCTTTTCCTAATATCCAAATGAAAATAGAGATTCATCAAATTCTCAAAGCTTGTTGAGTGGCTTTTGTGTGATTTAAGCCTCATAAAAGGTCTAcctctgtttgtttattgtagTAGAATTTGTCTTTATCCACATAGCCTGATATGGAAGGTGCCAGGGTTCCAGGTTTCAGACTCATCCTGTCATAAAGCCTATTTGTTTTCATAAACATGCAAATACTTGTTCATATACAGCTGAATTTTCCTCCCTTTAGGTGCTCTGTTTCCTTATTCGTGTTTGAGAAGGTCCACTTTGAAGCAACTCCATTTATAGATATAACACAGGGAATAGATTTGGGACAATAGGTTTCTGTAATGCTCCTTCAGCCTTGATCTCCTTGATCTAAAAGTGCTTCTTTTCATGAATGTTATTTAAACATCCAGGGTTGTTTTGGTAATTTATTTACAATCTTTTGAATATATTGTAGTTTAGTAACGTTGAGACGTACGAAAAATTCCTCAACTCCCATCCATCGCATTCCCAATTTTCTCACCTCAACAGATGATGCATCCTGCCAGAAACTGTAATTGACGCTGTCATCAGGCATAGTACATGGTTTGTACAAAGCACTCTCTGTCATACCATATGAACTACAAACCAACCTACAGATTATGTTTGTCTTGCtctaatatactaaatatactaaaaataaaaaggaagatTGTAAGCAGAGGCTTAAGCTAGACCTTTTCCATCAAACATGGACTCTacgtgtttaaaaataaaggttccaAAGAGGGTTATTTTGCTTGATTCCAGAATAATAAGACAACTTTAGGTTCCttgaagaatttaaaatgtgtgcttcatataaaaaaaaacacactatgaAAAGTACTCAACTTAAAGATTCTTTAGGCAACTAAAATAAGTCCTACTTCACTAGAAAGAACCCTTATTTGgcccttttatttttaagagtgtaggaGTTTACGGACATGCTGTATCTTTTATATAGAAACCGGGATGTAATGCGAGGTGTGTACATTTGTATGTTGGAGATTATCCAGATGAGACTTTTATTTGAAAGATCATTAAACTTTTTCTGATTCTTTGTTCTGGTGGTGTTGGTTGTGCTATAGATCCCCAGTCTTGCTTCAAAGAATTAACGGTCAATAAAAACCAACTCCTGATTTTGCACTTTAGATTATGTGTATACCCTGCTATGTGCCTTAATGACTGGCATGCTTATGCAACAGGACTGGCATGTCTTAACATGACTATCTGGCTAACGTGTGTAATGCCTTGCAGCTGAAATGTTTGGTGAAAGTCACCGAATTGCATTTaccatttttcctgcttctaCTTCTGTCAAggctgttaataataataataataataatacactccagtGGTTTTGTCATGCATATATGGGGTCCAAATACATGCTTACATCCTGAGAATGGCCAAATGAATTTATGAATCTCTGCAATAAAGTGAGTCACCAAGTG

Function

NR:

description
charged multivesicular body protein 4c

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247900.3 True 2664 mRNA 0.42 5 40619650 40627651

Neighbor

gene id symbol gene type direction distance location
LOC103026522 eif2s2,LOC103026522,LOC108414623,LOC107739644,LOC107756850,LOC107566961,LOC107666094 coding downstream 4005 40609610 ~ 40615645 (-)
trnaw-cca_41 NA coding downstream 13550 40606029 ~ 40606100 (-)
LOC103023575 LOC103023575,LOC108414617,LOC108433700,LOC105906813,LOC103460371,LOC100694607,LOC103156966 coding downstream 35227 40579898 ~ 40584423 (-)
LOC103023259 ywhaba,LOC103023259,LOC108414621,LOC107708121,LOC107584065,LOC107595428,LOC108412308 coding downstream 40066 40574858 ~ 40579584 (-)
LOC103022532 pabpc1l,LOC108265404,LOC108414618,LOC107702880 coding downstream 56339 40553636 ~ 40563311 (-)
LOC103024844 NA coding upstream 4417 40632068 ~ 40638773 (-)
rer1 rer1,LOC107678415,LOC107710784,LOC107698848,LOC107595758 coding upstream 24923 40652574 ~ 40662571 (-)
tp73 tp73 coding upstream 38820 40666471 ~ 40726479 (-)
prdm16 prdm16 coding upstream 136204 40763855 ~ 41072239 (-)
mfn2 mfn2,LOC107748965,LOC107710790,LOC107602467,LOC107678429 coding upstream 619735 41247386 ~ 41278478 (-)
G57788 NA non-coding downstream 328464 40290977 ~ 40291186 (-)
G57782 NA non-coding downstream 363834 40255567 ~ 40255816 (-)
G57754 NA non-coding downstream 455370 40162984 ~ 40164280 (-)
G57748 NA non-coding downstream 457546 40161527 ~ 40162104 (-)
G57729 kdm5c non-coding downstream 494704 40121485 ~ 40124946 (-)
G57916 NA non-coding upstream 36869 40664520 ~ 40664764 (-)
G57925 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 non-coding upstream 113863 40741514 ~ 40748539 (-)
G57920 NA non-coding upstream 133844 40761495 ~ 40762172 (-)
G58031 mthfr,LOC107687111 non-coding upstream 821562 41449213 ~ 41452982 (-)
G58145 NA non-coding upstream 1224938 41852589 ~ 41944829 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 440509 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 500555 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 1056729 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 2314184 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 3292914 37302047 ~ 37326736 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 121090 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 768435 41396086 ~ 41398478 (-)
G58435 aaas other upstream 2475219 43102870 ~ 43107623 (-)
G58537 NA other upstream 3054673 43682324 ~ 43682684 (-)
G58649 NA other upstream 3740249 44367900 ~ 44368368 (-)

Expression


Co-expression Network