plod1 (plod1,plod1a,LOC107698842)


Basic Information

Item Value
gene id plod1
gene name plod1,plod1a,LOC107698842
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41281161 ~ 41296693 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247915.3
GAAGGGTGGGAAGGAGGGGACGGCTGGGCAGGCTATGTTTATAGAGGGGCTGTGTACATACAGCTATAAAACTCCAGCTAACTTTCTACTTCCAGCGTTTCTGCACGTACACATTTATCTGTCTGAGATCCGAGAGAGGAGCTCGGAGCCGCGGACTAAAGATGAGGGCTGGAACGCTAACTCTGGTGTTTGGGCTTTTATGGTTGACTGCGTTTTCCCCGCTGCACTGTGAGCCGAAGGGACCCCTTCCTGAAGAGAAGCTCCTTGTACTGACAGTAGCAACAAAAGAAACTGATGGATTTAAGAGGTTCATGAGATCTGCACAGCACTTTAATTACACAGTTAAGGTTCTTGGCAGGGGTGAAAAATGGAACGGTGGGGATTATATGACAGCACCCGGAGGAGGACAGAAAGTACGTCTGCTGAAGTCAGCCCTGGCTGACATAAAAGAGAAGGATAAGATCATTCTCTTCATTGACAGCTATGATGTTGTCTTTTCCTCGGGTCCCAAAGAGCTGCTGAAGAAGTTCCAGCAGGCTAAACACAAGGTGGTCTTCTCAGCCGAGACCCTAATTTGGCCGGACCGTCATTTGGAGGACAAGCACCCGCACGTCAGAGAGGGAAAGAGGTTCCTTGGGGCTGGAGGCTTCATTGGCTATGTCCCTAACCTTAAGGAGATGGTCTCAGATTGGTCAGGGGAAGATGATGACAGTGACCAGCTGTTTTATACCAAAGTGTACATCAACCCAGCAAAACGGAAATCTATAAATATAACCCTGGACAGCAAGTGCAGATTGTTCCAGAACCTCCACGGAGCTCTTGATGAAGTGGTGTTGAAATTTGAGGACGGAAGGGTGCGGGCCAGAAATGTGTTGTATGACACCCTGCCTGTTATTGTGCATGGCAATGGGCCCACAAAGCTGCAGATTAATTACCTTGGAAACTATATCCCGAATGTGTGGACATTCGAGACTGGCTGCACAGTTTGCAGTGAAGACCTTCGGTCCTTTTCAACACTCAAGGAGAGTGAGTTTCCAGTGGTGGTCATTGGCATCTTCATTCAGCAGCCCACTCCCTTCGTTTCAGCGTTTTTCGAGCGCCTGGTTAATCTCAAGTACCCCAAAAACCGCCTCAACCTCTTCATTTACAATCAGGAGCCACACCATGATAAGCACATCCGTTCATTCCTAGAAAGTCATGAAGCAGACTACAAGGTTGTGAAGCTGATTGGTCCAGATGAGGGGGTCGATGTTATAACTTCACGCAATATTGGCTTTGATATGTGTCGAGATGACATTGACTGTGAATACTTCTTTAGTGTGGATGTGGAAGTAGTCTTGAAGAATGAAGACACTCTTAAGATACTAATTGAGCTTAATAAACCTTTTGTAGCACCAATGATGACTAAACCTGGCCGCCTGTGGACAAATTTCTGGGGAGCTCTGAGTGCAGATGGGTACTATGCCAGGTCAGAGGACTATGTGGACATTGTTCAAGCACGCAGAGTGGGGATCTGGAATGTTCCATATGTGTCTCAGGTGTACCTGCTTAGAGCTGACGTTCTGAGAAGTGAACTAAAAGATTCTGACCTCTTCAATTCTGCAACACTTGACCCAGATATGGCCTTCTGCTCTAGAGTGCGAGATCAGggtgtGTTCATGTTTGTAACAAACATGCATTCATTCGGCCGTGTCCTAAATACAGAAAACTACCAGACGAATCACCTGCACAATGATCTTTGGCAGATCTTTGAAAACCCAGTGgACTGGGAGGAGCGATACATTCATGAGAACTACTCACAAATTTTGAACGGCAATATAGTGGAAAATCCATGTCCTGATGTATACTGGTTCCCAATTTTCACTGAACGGACCTGCACACACCTTGTTGAAGAAATGGAACATTTTGGCCAGTGGTCTGGAGGTGGAAATACAGACACCAGGATCCAGGGAGGTTATGAAAATGTTCCCACAATTGACATTCACATGAACCAGGTTAATTTTGAAAAAGAGTGGCAGAAATTCCTTTTGGATTATATTGCCCCTGTCACAGAGAAAATGTTTCCTGGGTACTTTACAAGGGCTCTGTTTGATTTGGCGTTTGTTGTTAGATATAGACCCGATGAACAGCCCTCTTTAAGGCCACATCACGATGCGTCCACTTTTACTATAAATATTGCTCTCAATCAAGTGGGAATAGATTATCAGGGCGGAGGCTGTCGATTCCTTAGATACAACTGCTCCATACGGGCCCCCAGGAAAGGTTGGGCCCTCATGCACCCGGGCCGCTTAACACACTACCATGAAGGCCTCCCTACCACATCAGGCACCAGATACATCGCTGTTTCATTTGTGGATCCTTGAGTTGATCTCATTAGGAAGCCAATtgtttagaaaaacaaaacaaaacaggatGGTTATATTGTAATATGGGAGTTTTAGCAGGACCAGAGACGCAATCATTTTGACTTTACATTGAGAATCATTAAACGATTTGATAGAGACTGTGCCTTACATGCCCTATAAATCTGTAATGTTGTACTAACAGAACTGTATTTAGAAGGCCAAGTGAACTCAGGTTTACTTTAAATGCAGTAGATGGAGATGCAGTGTGTACCTCtatgaaaaaaatgcttttatttattgatcCATTTCCAAAGCATTTACACCAAAGGTTTAAGTGATAGAAATTATTTgctcaactatttttttttcttggataACAGAATCATACATCAGGCTTTCTACTTGATAATGTTTCCTAGAAAAAGGTGCTACTGTTTAGAGATGGGCTGATGTAGGTTTTTTCTTCAGTGCTCTCTTAAGTCATAATTTTATATGTccgttgtttttattttaaaggtttgttttcttattttttcttgtcAATAAATGTTACTTTTTCACTAA
>XM_007247916.3
TGGAAGGGTGGGAAGGAGGGGACGGCTGGGCAGGCTATGTTTATAGAGGGGCTGTGTACATACAGCTATAAAACTCCAGCTAACTTTCTACTTCCAGCGTTTCTGCACGTACACATTTATCTGTCTGAGATCCGAGAGAGGAGCTCGGAGCCGCGGACTAAAGATGAGGGCTGGAACGCTAACTCTGGTGTTTGGGCTTTTATGGTTGACTGCGTTTTCCCCGCTGCACTGTGAGCCGAAGGGACCCCTTCCTGAAGAGAAGCTCCTTGTACTGACAGTAGCAACAAAAGAAACTGATGGATTTAAGAGGTTCATGAGATCTGCACAGCACTTTAATTACACAGTTAAGGTTCTTGGCAGGGGTGAAAAATGGAACGGTGGGGATTATATGACAGCACCCGGAGGAGGACAGAAAGTACGTCTGCTGAAGTCAGCCCTGGCTGACATAAAAGAGAAGGATAAGATCATTCTCTTCATTGACAGCTATGATGTTGTCTTTTCCTCGGGTCCCAAAGAGCTGCTGAAGAAGTTCCAGCAGGCTAAACACAAGGTGGTCTTCTCAGCCGAGACCCTAATTTGGCCGGACCGTCATTTGGAGGACAAGCACCCGCACGTCAGAGAGGGAAAGAGGTTCCTTGGGGCTGGAGGCTTCATTGGCTATGTCCCTAACCTTAAGGAGATGGTCTCAGATTGGTCAGGGGAAGATGATGACAGTGACCAGCTGTTTTATACCAAAGTGTACATCAACCCAGCAAAACGGAAATCTATAAATATAACCCTGGACAGCAAGTGCAGATTGTTCCAGAACCTCCACGGAGCTCTTGATGAAGTGGTGTTGAAATTTGAGGACGGAAGGGTGCGGGCCAGAAATGTGTTGTATGACACCCTGCCTGTTATTGTGCATGGCAATGGGCCCACAAAGCTGCAGATTAATTACCTTGGAAACTATATCCCGAATGTGTGGACATTCGAGACTGGCTGCACAGTTTGCAGTGAAGACCTTCGGTCCTTTTCAACACTCAAGGAGAGTGAGTTTCCAGTGGTGGTCATTGGCATCTTCATTCAGCAGCCCACTCCCTTCGTTTCAGCGTTTTTCGAGCGCCTGGTTAATCTCAAGTACCCCAAAAACCGCCTCAACCTCTTCATTTACAATCAGGAGCCACACCATGATAAGCACATCCGTTCATTCCTAGAAAGTCATGAAGCAGACTACAAGGTTGTGAAGCTGATTGGTCCAGATGAGGGGGTCGATGTTATAACTTCACGCAATATTGGCTTTGATATGTGTCGAGATGACATTGACTGTGAATACTTCTTTAGTGTGGATGTGGAAGTAGTCTTGAAGAATGAAGACACTCTTAAGATACTAATTGAGCTTAATAAACCTTTTGTAGCACCAATGATGACTAAACCTGGCCGCCTGTGGACAAATTTCTGGGGAGCTCTGAGTGCAGATGGGTACTATGCCAGGTCAGAGGACTATGTGGACATTGTTCAAGCACGCAGAGTGGGGATCTGGAATGTTCCATATGTGTCTCAGGTGTACCTGCTTAGAGCTGACGTTCTGAGAAGTGAACTAAAAGATTCTGACCTCTTCAATTCTGCAACACTTGACCCAGATATGGCCTTCTGCTCTAGAGTGCGAGATCAGggtgtGTTCATGTTTGTAACAAACATGCATTCATTCGGCCGTGTCCTAAATACAGAAAACTACCAGACGAATCACCTGCACAATGATCTTTGGCAGATCTTTGAAAACCCAGTGgACTGGGAGGAGCGATACATTCATGAGAACTACTCACAAATTTTGAACGGCAATATAGTGGAAAATCCATGTCCTGATGTATACTGGTTCCCAATTTTCACTGAACGGACCTGCACACACCTTGTTGAAGAAATGGAACATTTTGGCCAGTGGTCTGGAGGTGGAAATACAGACACCAGGATCCAGGGAGGTTATGAAAATGTTCCCACAATTGACATTCACATGAACCAGGTTAATTTTGAAAAAGAGTGGCAGAAATTCCTTTTGGATTATATTGCCCCTGTCACAGAGAAAATGTTTCCTGGGTACTTTACAAGGTGTATCTCCTACCTCAACTTTGTTGTGAGGTACAAACCTGACGAGCAGCCCTTACTCACCCCACACCACGATGCGTCCACTTTTACTATTAACATAGCTCTCAACAGCAAAGACATTGACTATCAGGGCGGAGGCTGTCGATTCCTTAGATACAACTGCTCCATACGGGCCCCCAGGAAAGGTTGGGCCCTCATGCACCCGGGCCGCTTAACACACTACCATGAAGGCCTCCCTACCACATCAGGCACCAGATACATCGCTGTTTCATTTGTGGATCCTTGAGTTGATCTCATTAGGAAGCCAATtgtttagaaaaacaaaacaaaacaggatGGTTATATTGTAATATGGGAGTTTTAGCAGGACCAGAGACGCAATCATTTTGACTTTACATTGAGAATCATTAAACGATTTGATAGAGACTGTGCCTTACATGCCCTATAAATCTGTAATGTTGTACTAACAGAACTGTATTTAGAAGGCCAAGTGAACTCAGGTTTACTTTAAATGCAGTAGATGGAGATGCAGTGTGTACCTCtatgaaaaaaatgcttttatttattgatcCATTTCCAAAGCATTTACACCAAAGGTTTAAGTGATAGAAATTATTTgctcaactatttttttttcttggataACAGAATCATACATCAGGCTTTCTACTTGATAATGTTTCCTAGAAAAAGGTGCTACTGTTTAGAGATGGGCTGATGTAGGTTTTTTCTTCAGTGCTCTCTTAAGTCATAATTTTATATGTccgttgtttttattttaaaggtttgttttcttattttttcttgtcAATAAATGTTACTTTTTCACTAA
>XM_022670697.1
TGGAAGGGTGGGAAGGAGGGGACGGCTGGGCAGGCTATGTTTATAGAGGGGCTGTGTACATACAGCTATAAAACTCCAGCTAACTTTCTACTTCCAGCGTTTCTGCACGTACACATTTATCTGTCTGAGATCCGAGAGAGGAGCTCGGAGCCGCGGACTAAAGATGAGGGCTGGAACGCTAACTCTGGTGTTTGGGCTTTTATGGTTGACTGCGTTTTCCCCGCTGCACTGTGAGCCGAAGGGACCCCTTCCTGAAGAGAAGCTCCTTGTACTGACAGTAGCAACAAAAGAAACTGATGGATTTAAGAGGTTCATGAGATCTGCACAGCACTTTAATTACACAGTTAAGGTTCTTGGCAGGGGTGAAAAATGGAACGGTGGGGATTATATGACAGCACCCGGAGGAGGACAGAAAGTACGTCTGCTGAAGTCAGCCCTGGCTGACATAAAAGAGAAGGATAAGATCATTCTCTTCATTGACAGCTATGATGTTGTCTTTTCCTCGGGTCCCAAAGAGCTGCTGAAGAAGTTCCAGCAGGCTAAACACAAGGTGGTCTTCTCAGCCGAGACCCTAATTTGGCCGGACCGTCATTTGGAGGACAAGCACCCGCACGTCAGAGAGGGAAAGAGGTTCCTTGGGGCTGGAGGCTTCATTGGCTATGTCCCTAACCTTAAGGAGATGGTCTCAGATTGGTCAGGGGAAGATGATGACAGTGACCAGCTGTTTTATACCAAAGTGTACATCAACCCAGCAAAACGGAAATCTATAAATATAACCCTGGACAGCAAGTGCAGATTGTTCCAGAACCTCCACGGAGCTCTTGATGAAGTGGTGTTGAAATTTGAGGACGGAAGGGTGCGGGCCAGAAATGTGTTGTATGACACCCTGCCTGTTATTGTGCATGGCAATGGGCCCACAAAGCTGCAGATTAATTACCTTGGAAACTATATCCCGAATGTGTGGACATTCGAGACTGGCTGCACAGTTTGCAGTGAAGACCTTCGGTCCTTTTCAACACTCAAGGAGAGTGAGTTTCCAGTGGTGGTCATTGGCATCTTCATTCAGCAGCCCACTCCCTTCGTTTCAGCGTTTTTCGAGCGCCTGGTTAATCTCAAGTACCCCAAAAACCGCCTCAACCTCTTCATTTACAATCAGGAGCCACACCATGATAAGCACATCCGTTCATTCCTAGAAAGTCATGAAGCAGACTACAAGGTTGTGAAGCTGATTGGTCCAGATGAGGGGGTCGATGTTATAACTTCACGCAATATTGGCTTTGATATGTGTCGAGATGACATTGACTGTGAATACTTCTTTAGTGTGGATGTGGAAGTAGTCTTGAAGAATGAAGACACTCTTAAGATACTAATTGAGCTTAATAAACCTTTTGTAGCACCAATGATGACTAAACCTGGCCGCCTGTGGACAAATTTCTGGGGAGCTCTGAGTGCAGATGGGTACTATGCCAGGTCAGAGGACTATGTGGACATTGTTCAAGCACGCAGAGTGGGGATCTGGAATGTTCCATATGTGTCTCAGGTGTACCTGCTTAGAGCTGACGTTCTGAGAAGTGAACTAAAAGATTCTGACCTCTTCAATTCTGCAACACTTGACCCAGATATGGCCTTCTGCTCTAGAGTGCGAGATCAGggtgtGTTCATGTTTGTAACAAACATGCATTCATTCGGCCGTGTCCTAAATACAGAAAACTACCAGACGAATCACCTGCACAATGATCTTTGGCAGATCTTTGAAAACCCAGTGgACTGGGAGGAGCGATACATTCATGAGAACTACTCACAAATTTTGAACGGCAATATAGTGGAAAATCCATGTCCTGATGTATACTGGTTCCCAATTTTCACTGAACGGACCTGCACACACCTTGTTGAAGAAATGGAACATTTTGGCCAGTGGTCTGGAGGTGGAAATACAGACACCAGGATCCAGGGAGGTTATGAAAATGTTCCCACAATTGACATTCACATGAACCAGGTTAATTTTGAAAAAGAGTGGCAGAAATTCCTTTTGGATTATATTGCCCCTGTCACAGAGAAAATGTTTCCTGGGTACTTTACAAGGTGTATCTCCTACCTCAACTTTGTTGTGAGGTACAAACCTGACGAGCAGCCCTTACTCACCCCACACCACGATGCGTCCACTTTTACTATTAACATAGCTCTCAACAGCAAAGACATTGACTATCAGGCTCTGTTTGATTTGGCGTTTGTTGTTAGATATAGACCCGATGAACAGCCCTCTTTAAGGCCACATCACGATGCGTCCACTTTTACTATAAATATTGCTCTCAATCAAGTGGGAATAGATTATCAGGGCGGAGGCTGTCGATTCCTTAGATACAACTGCTCCATACGGGCCCCCAGGAAAGGTTGGGCCCTCATGCACCCGGGCCGCTTAACACACTACCATGAAGGCCTCCCTACCACATCAGGCACCAGATACATCGCTGTTTCATTTGTGGATCCTTGAGTTGATCTCATTAGGAAGCCAATtgtttagaaaaacaaaacaaaacaggatGGTTATATTGTAATATGGGAGTTTTAGCAGGACCAGAGACGCAATCATTTTGACTTTACATTGAGAATCATTAAACGATTTGATAGAGACTGTGCCTTACATGCCCTATAAATCTGTAATGTTGTACTAACAGAACTGTATTTAGAAGGCCAAGTGAACTCAGGTTTACTTTAAATGCAGTAGATGGAGATGCAGTGTGTACCTCtatgaaaaaaatgcttttatttattgatcCATTTCCAAAGCATTTACACCAAAGGTTTAAGTGATAGAAATTATTTgctcaactatttttttttcttggataACAGAATCATACATCAGGCTTTCTACTTGATAATGTTTCCTAGAAAAAGGTGCTACTGTTTAGAGATGGGCTGATGTAGGTTTTTTCTTCAGTGCTCTCTTAAGTCATAATTTTATATGTccgttgtttttattttaaaggtttgttttcttattttttcttgtcAATAAATGTTACTTTTTCACTAA

Function

symbol description
plod1a Predicted to enable procollagen-lysine 5-dioxygenase activity. Acts upstream of or within fin morphogenesis. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of collagen trimer. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including cranium; notochord; otic vesicle; pectoral fin; and shield. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome kyphoscoliotic type 1. Orthologous to human PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1).
plod1 Enables procollagen-lysine 5-dioxygenase activity. Involved in epidermis development; peptidyl-lysine hydroxylation; and response to hypoxia. Located in extracellular exosome. Implicated in Ehlers-Danlos syndrome kyphoscoliotic type 1.

NR:

description
PREDICTED: procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0033334 fin morphogenesis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005506 iron ion binding molecular_function
GO:0008475 procollagen-lysine 5-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00473 PLOD1; procollagen-lysine,2-oxoglutarate 5-dioxygenase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247915.3 False 2909 mRNA 0.44 19 41281161 41296691
XM_007247916.3 False 2911 mRNA 0.44 19 41281161 41296693
XM_022670697.1 True 3037 mRNA 0.44 20 41281161 41296693

Neighbor

gene id symbol gene type direction distance location
mfn2 mfn2,LOC107748965,LOC107710790,LOC107602467,LOC107678429 coding downstream 2683 41247386 ~ 41278478 (-)
prdm16 prdm16 coding downstream 208922 40763855 ~ 41072239 (-)
tp73 tp73 coding downstream 554682 40666471 ~ 40726479 (-)
rer1 rer1,LOC107678415,LOC107710784,LOC107698848,LOC107595758 coding downstream 618590 40652574 ~ 40662571 (-)
LOC103024844 NA coding downstream 642388 40632068 ~ 40638773 (-)
clcn6 clcn6 coding upstream 108678 41405371 ~ 41436478 (-)
LOC103033502 NA coding upstream 161303 41457996 ~ 41493671 (-)
LOC103034037 NA coding upstream 196911 41493604 ~ 41513087 (-)
pex10 pex10 coding upstream 220272 41516965 ~ 41527890 (-)
LOC103035734 NA coding upstream 682864 41979557 ~ 42034244 (-)
G57920 NA non-coding downstream 518989 40761495 ~ 40762172 (-)
G57925 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 non-coding downstream 532622 40741514 ~ 40748539 (-)
G57916 NA non-coding downstream 616397 40664520 ~ 40664764 (-)
G57788 NA non-coding downstream 989975 40290977 ~ 40291186 (-)
G57782 NA non-coding downstream 1025345 40255567 ~ 40255816 (-)
G58031 mthfr,LOC107687111 non-coding upstream 152520 41449213 ~ 41452982 (-)
G58145 NA non-coding upstream 555896 41852589 ~ 41944829 (-)
G58152 NA non-coding upstream 579570 41876263 ~ 41934574 (-)
G58149 plch2 non-coding upstream 603417 41900110 ~ 41903678 (-)
G58159 NA non-coding upstream 614090 41910783 ~ 41911110 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 525147 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 1102020 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 1162066 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 1718240 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 2975695 38261117 ~ 38305466 (-)
G58022 LOC103032860,LOC108432146 other upstream 99393 41396086 ~ 41398478 (-)
G58435 aaas other upstream 1806177 43102870 ~ 43107623 (-)
G58537 NA other upstream 2385631 43682324 ~ 43682684 (-)
G58649 NA other upstream 3071207 44367900 ~ 44368368 (-)
G58678 NA other upstream 3177466 44474159 ~ 44477666 (-)

Expression


Co-expression Network