LOC103035003 (LOC108432140)


Basic Information

Item Value
gene id LOC103035003
gene name LOC108432140
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41910748 ~ 41934572 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247929.2
CTCTTTCTGATTGGCTACTTTCTGACACTGGGGAATTTACATGCTTTATATGTACGGGGGGCCCTGGTGGTCTGCATAGTGGAAAGAAAATTGATCACAGACCAGGCACGCTCCCATGCAGTTGGCAGAATACAGCAGGATGGCATCACTGGGGCTCCTCGCGCTCACTGCGGCACTGTTGGCTGGGGTCTGCACTGCAGaaccACAGCCATTAAAGGTGACCACCATTAAGCAAGAACCGTACGCAATGTCCAAAGGCACAGAACTGGAAGGCTTCTGCATTGATCTGTTGTCTGCGCTTGCCAGTAAATTGGGTTTCAAGTACGAGCTTCACGTGGTGAAGGACGGGAGATATGGGGCCAAGAACGAACAGGGCACCTGGAACGGCATGATCGGAGAGGTTTTCAGACGGGAAGCTGACCTTGCTGTTGCCCCGCTAACCCTCACGGCCTCACGGGAGGCAGCTGTGGACATGACCAAACCTTTCATGCAGACAGGCCTGAGTTTCATCATGAGAAAAGACATCGCCTCCGACGACTCTCAGTATCTCAGCTTTTTGAATCTCTTCTCCACTGAAATGTGGCTGGGTATCCTGGTGGCTTATCTGCTAACCTCCTTTTGTATCTATCTGGCAGCACGgATTAGCCCATCTGAATGGGAGAAACCCCAAGCTGACGAAAATCaattcacactctcacacagctTCTGGTACACTGTCGGGGCCATAACTCTGCAAGGAGCGGGCCCTCACCCCAAGGCCTTGTCAGGACGGCTGATTACTGCCATCTGGTGGTTGTTTTCACTGATGGTCCTGGCCTGTTACTTCGCCAACCTCAGTGCCTGGCTTCATTCAGACAGTAACCAGCTGTCAATCAAGAGCTTTGAAGACCTAGCCAACCAAAACATTATTCAGTATGGCACAATCAAGGGCTCTTCTTCTCTTAACTTCTTCAAGAATTCCAACAATCCCATCTATCGCCGGGTCTATGAGAACATGGAGAGGCAGCAGAGCTATGCGCAGTCGATGGATGAGGGCGTTCGTAGGGCTCAGGAAGGGAATTACGCCTTCATCGGGGAGTCTGTGTCTCTGGACCTGGTTGTTGCACGTTACTGTAATCTGATTCGCTCTCCTGATGTCGTCGGCATGAGAGGCTACAGCATTGCTGCTCCTTTAGGCTCTCCTTTGATGAAAAACTTGAGCGTGGCCATCCTCCAGCTGAGCGAGTCCGGAGAGCTGGATTACCTCCGCAGCAAGTGGTGGGCCAGCAGCTGCGTAGCGGAAAATGCCCAGGCCTCGCCTCTCAAGGCCAGCAGCCTGAAGGGAGTCTTCCTACTGCTGGCGCTCGGCCTGGGCCTGGGAGTCGCTATGGCCCTCATGGAGCTGGCGGCCAAATCACGAAGCATCGCTAACACACAGCAGAAATCATGTTGCTCTATCTGGTTGACTGAACTCAGTCAGCGATTTGGAAGAAAGGAGGAGAAGACGTCgtcagaaacagaagaaaaatgcAAAGCTTGAACCTGCGCAGGACTAACATAGAACATCCTTGGGTTTCTGTTCACATATTCAGCTGTTTttcatctctgttttaaaaaaaaaagctgttactAATGACTTTAGAGACTGTGCTAATGTAAGAAACAGATTTCATTTCTGCATGTATGTAACTCATGTATTCATGTATGGTAACTAGAGATGCAccgaaatgaaaaaaaaggccAATACTTAACAAAATTAAGGTTTTTGGaggttttcattaattttcGTTCATTTCTTTGTTGAATAAAtgaaacagctaaaaaaaatgtaaacgttTTTTATGTCCCTGCAgacaaactaaacaaagcacaatatatttaagtgctgttttaatcatgaaatcattttagcagtgctattctagtcatacagtaaatgtacctcagcagtgctactgagGACACATTTGAGTGAAATTTACACAAACATAGCCAGTCAGTCTTTCGCTAAACAAACAgatgctaaggctaagttatTTAAGCTAATGTTACTTTCTTAGCCCTCTACAGCCTGTTATGTTTCAGCTAAAAAATAGGCAGTTTGTGGAAGGTTTGTTAACTCAACCCTAGCATAAACGTATGTCAAGTTATGCTACCTATCGATATATGCTACTGGCACTGCGTATGCCTCCGTTCCTCCATTATAGGAAAAAATAAACTTGATATAcctaaaacaaactttttttcacTAATTTGGCCCCACATCTCACAATactttttccctttttatttgtggttgccaaatattcggtgcatcactaataataacaacaacacaaCATACAGAATTAGGTCTTATTTGGATGCTGCAGGATACTGTTCATTATACTGTTCAACCATAGACATGAGTGCTCTTGAAAAGTTACATATGATTTATTGCATTTAACTGTGCTTATGATATAGAGGAAATAGTAACATAGAGAAGAGTGAATAGTAAATCATTTCTACCTATCAGTTACTTATAAGTGAGTTTTATTCCCATGTAGCTTTTAGTGAGTAAACTTTGGTGCTAGTGTGGCTTGAAAGAAGACTTGTGAATGAGAAGTTTTATTGCTTTTGTACTGTGATATAACAGGCAAAATAAAAGTTACATGCTACCTTTTTATGCTTACATTTAAA
>XM_007247931.3
TTGATCACAGACCAGGGCTTGCTTATTCCTGATTTGTTCCAAACCTCTTTCTCACTGGTTTCGAAGCACGCTCCCATGCAGTTGGCAGAATACAGCAGGATGGCATCACTGGGGCTCCTCGCGCTCACTGCGGCACTGTTGGCTGGGGTCTGCACTGCAGaaccACAGCCATTAAAGGTGACCACCATTAAGCAAGAACCGTACGCAATGTCCAAAGGCACAGAACTGGAAGGCTTCTGCATTGATCTGTTGTCTGCGCTTGCCAGTAAATTGGGTTTCAAGTACGAGCTTCACGTGGTGAAGGACGGGAGATATGGGGCCAAGAACGAACAGGGCACCTGGAACGGCATGATCGGAGAGGTTTTCAGACGGGAAGCTGACCTTGCTGTTGCCCCGCTAACCCTCACGGCCTCACGGGAGGCAGCTGTGGACATGACCAAACCTTTCATGCAGACAGGCCTGAGTTTCATCATGAGAAAAGACATCGCCTCCGACGACTCTCAGTATCTCAGCTTTTTGAATCTCTTCTCCACTGAAATGTGGCTGGGTATCCTGGTGGCTTATCTGCTAACCTCCTTTTGTATCTATCTGGCAGCACGgATTAGCCCATCTGAATGGGAGAAACCCCAAGCTGACGAAAATCaattcacactctcacacagctTCTGGTACACTGTCGGGGCCATAACTCTGCAAGGAGCGGGCCCTCACCCCAAGGCCTTGTCAGGACGGCTGATTACTGCCATCTGGTGGTTGTTTTCACTGATGGTCCTGGCCTGTTACTTCGCCAACCTCAGTGCCTGGCTTCATTCAGACAGTAACCAGCTGTCAATCAAGAGCTTTGAAGACCTAGCCAACCAAAACATTATTCAGTATGGCACAATCAAGGGCTCTTCTTCTCTTAACTTCTTCAAGAATTCCAACAATCCCATCTATCGCCGGGTCTATGAGAACATGGAGAGGCAGCAGAGCTATGCGCAGTCGATGGATGAGGGCGTTCGTAGGGCTCAGGAAGGGAATTACGCCTTCATCGGGGAGTCTGTGTCTCTGGACCTGGTTGTTGCACGTTACTGTAATCTGATTCGCTCTCCTGATGTCGTCGGCATGAGAGGCTACAGCATTGCTGCTCCTTTAGGCTCTCCTTTGATGAAAAACTTGAGCGTGGCCATCCTCCAGCTGAGCGAGTCCGGAGAGCTGGATTACCTCCGCAGCAAGTGGTGGGCCAGCAGCTGCGTAGCGGAAAATGCCCAGGCCTCGCCTCTCAAGGCCAGCAGCCTGAAGGGAGTCTTCCTACTGCTGGCGCTCGGCCTGGGCCTGGGAGTCGCTATGGCCCTCATGGAGCTGGCGGCCAAATCACGAAGCATCGCTAACACACAGCAGAAATCATGTTGCTCTATCTGGTTGACTGAACTCAGTCAGCGATTTGGAAGAAAGGAGGAGAAGACGTCgtcagaaacagaagaaaaatgcAAAGCTTGAACCTGCGCAGGACTAACATAGAACATCCTTGGGTTTCTGTTCACATATTCAGCTGTTTttcatctctgttttaaaaaaaaaagctgttactAATGACTTTAGAGACTGTGCTAATGTAAGAAACAGATTTCATTTCTGCATGTATGTAACTCATGTATTCATGTATGGTAACTAGAGATGCAccgaaatgaaaaaaaaggccAATACTTAACAAAATTAAGGTTTTTGGaggttttcattaattttcGTTCATTTCTTTGTTGAATAAAtgaaacagctaaaaaaaatgtaaacgttTTTTATGTCCCTGCAgacaaactaaacaaagcacaatatatttaagtgctgttttaatcatgaaatcattttagcagtgctattctagtcatacagtaaatgtacctcagcagtgctactgagGACACATTTGAGTGAAATTTACACAAACATAGCCAGTCAGTCTTTCGCTAAACAAACAgatgctaaggctaagttatTTAAGCTAATGTTACTTTCTTAGCCCTCTACAGCCTGTTATGTTTCAGCTAAAAAATAGGCAGTTTGTGGAAGGTTTGTTAACTCAACCCTAGCATAAACGTATGTCAAGTTATGCTACCTATCGATATATGCTACTGGCACTGCGTATGCCTCCGTTCCTCCATTATAGGAAAAAATAAACTTGATATAcctaaaacaaactttttttcacTAATTTGGCCCCACATCTCACAATactttttccctttttatttgtggttgccaaatattcggtgcatcactaataataacaacaacacaaCATACAGAATTAGGTCTTATTTGGATGCTGCAGGATACTGTTCATTATACTGTTCAACCATAGACATGAGTGCTCTTGAAAAGTTACATATGATTTATTGCATTTAACTGTGCTTATGATATAGAGGAAATAGTAACATAGAGAAGAGTGAATAGTAAATCATTTCTACCTATCAGTTACTTATAAGTGAGTTTTATTCCCATGTAGCTTTTAGTGAGTAAACTTTGGTGCTAGTGTGGCTTGAAAGAAGACTTGTGAATGAGAAGTTTTATTGCTTTTGTACTGTGATATAACAGGCAAAATAAAAGTTACATGCTACCTTTTTATGCTTACATTTAAA

Function

NR:

description
PREDICTED: probable glutamate receptor

GO: NA

KEGG:

id description
K05387 GRIP; glutamate receptor, ionotropic, plant

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247929.2 True 2658 mRNA 0.44 10 41910748 41934572
XM_007247931.3 False 2618 mRNA 0.44 10 41910838 41934572

Neighbor

gene id symbol gene type direction distance location
plch2 plch2,LOC107691057,LOC107602463 coding upstream 7035 41785640 ~ 41903713 (+)
mthfr mthfr,LOC107602465,LOC107687111,LOC107691055 coding upstream 457785 41440699 ~ 41452963 (+)
LOC103032860 LOC103032860,LOC108432146 coding upstream 512643 41396141 ~ 41398105 (+)
nppa NA coding upstream 520252 41389619 ~ 41390496 (+)
LOC103039684 LOC108432092,LOC107710771,LOC106926566,LOC107691064,LOC102306682 coding upstream 575166 41318725 ~ 41335582 (+)
dpp9 dpp9 coding downstream 13447 41948019 ~ 41977048 (+)
LOC103027292 NA coding downstream 107755 42042327 ~ 42059412 (+)
LOC103027595 NA coding downstream 127726 42062298 ~ 42067929 (+)
LOC103036755 NA coding downstream 141902 42076474 ~ 42077943 (+)
espn espn coding downstream 496918 42431490 ~ 42532518 (+)
G58096 NA non-coding upstream 147170 41758283 ~ 41763578 (+)
G58074 NA non-coding upstream 219360 41691121 ~ 41691388 (+)
G58054 NA non-coding upstream 331700 41578321 ~ 41579048 (+)
G57987 NA non-coding upstream 614074 41294584 ~ 41296674 (+)
G57972 mfn2,LOC107748965,LOC107710790,LOC107698839,LOC107678429,LOC107602467 non-coding upstream 655309 41252811 ~ 41255439 (+)
G58114 NA non-coding downstream 75474 42010046 ~ 42030054 (+)
G58177 NA non-coding downstream 115569 42050141 ~ 42051109 (+)
G58201 NA non-coding downstream 193618 42128190 ~ 42131034 (+)
LOC111192688 NA non-coding downstream 431560 42366132 ~ 42422813 (+)
G58227 NA non-coding downstream 471625 42406197 ~ 42406592 (+)
G58025 NA other upstream 471837 41438027 ~ 41438911 (+)
LOC103032352 LOC103032352,LOC108432100 other upstream 533303 41374689 ~ 41377445 (+)
G57856 tp73 other upstream 1230193 40675040 ~ 40680555 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 1820477 39967090 ~ 40090271 (+)
ndufa7 ndufa7 other downstream 101267 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 274149 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 600329 42534901 ~ 42576703 (+)
G58256 ppih other downstream 642620 42577192 ~ 42626114 (+)
G58529 NA other downstream 1726210 43660782 ~ 43661647 (+)

Expression


Co-expression Network