ogg1 (ogg1)


Basic Information

Item Value
gene id ogg1
gene name ogg1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42862953 ~ 42873055 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247960.3
ACGTGGGTAATTCTTGACTAGCATAGTGAACGAGGGCGTCGCACATGAGTTGCATCAGTCAGTCTGACTAAGATTTAATGAACTTTATATCTTTAAAGAATGAAAAATAACTGACAAGCCAATAGACACGCTTTAGAGAACACTGTACAGAGAATTTAATCAGCTCAAGGGTCCTTCACTCATTCGTCACTGTGGAAAAGACTCTTTACACGCTGACTCACATTTATCAGACCACCCTCTTCCTCATGGTCTAAGAGTGATCCAGCAGCAGGATGTCCCAACATGCTTTGCTGTCTGTGGGGGCCAAAGCATGGCGTTCCATTCCCTGCCTGCGCTCTGAACTTCGGCTGGACCTGACACTGGGATGTGGACAAAGCTTCAGATGGCGTGAAACAGGAGAAGGCCACTGGACAGGAGTGATGGGGGGACGAGTGTGGACACTCACTCAGACAGAAGATACCTTATGGTACCATGTCTACAGTAATCCTGGAaatacagcattaattaatggACAGAAACGCAAAGCCGAGGTGGGGCCACAGCACTcagaaaagaaattaaaacaagTGTCTACTGTAAAAAAGGAAGAGGATGAGTTGGACCTAGATGCTGTGAGCTCTGAGCAGGATGAGAAGGCGGGAACACTTTTGAGAGACTATTTCCAGTTGGATGTTAAGCTAGGAGATTTGTACAGAGAGTGGAGTGATGCAGATCAACACTTCAGCCAGACAGCGCACATCTTCACAGGAGTGCGGATGCTACGCCAGGATCCTGTGGAGTGTCTCTTCTCGTTCATCTGTAGCTCTAATAATCACATCTCTCGGATTCAGGGCATGGTAGAGCGACTGTGTAACACACTGGGGACACCACTCTGCAAGCTGGATGACACACACTATCACGACTTCCCCCCCTTACAGGCACTGGCAGACAGTAAGGTGGAGGCATGTCTGCGTGATCTAGGTTTTGGGTACCGTGCACGTTTCCTGCAGCAGAGTGCTCACCTTATCATGAACTCCCACGGTCCTGACTGGCTCTACACACTCCGCAGCGCCCCCTACCTGCAGGCTAGAGATGCACTCCGGACACTCCCTGGTGTTGGTCTTAAGgtggctgactgtgtgtgtttgatgtcgCTGGACAAGTCTGAAGCTGTCCCTGTAGACACACACGTGTGGCAGATTGCTAAACGAGACTATAACTGTGCTGCGGGTCACGGGCAGAAGACTCTGACTGATAAGCTCTATAATGAGATTGGAGATTTCTTCAGGAAGCTCTGGGGCTGCTATGCTGGCTGGGCTCACTCTGTATTGTTCTGTGCTGACCTGAAGAAGTTTCAGAATCTGAAAGAAGTCGCcgtgaaagaagaaaagaaagaaaagatcaAAAGATTGACAAACCGTACTAAAAAGAAGACTGTGaaaaaggaagaagaggaaggagAGTGAGTTGTCTCACTCTGTCATTCATCACGTCTTGCTGCTGAACAGATTGAGCAGGACTTTTGATGTtcagtgggaaaaaaaaactcaggaCTAATGGATTCATGATTTCTGTACTTCTCTCCATATTTGTGGTGAActgtttcacttttttaatattagGTGATTTCGTCTGACACTGAATATTTTGTATTAGGATATAAGGCGAATGTGTCAATGATTTACCTGctgtttttgggtgtttttaaatgtgtgtttttctctgaaa

Function

symbol description
ogg1 Predicted to enable 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity. Acts upstream of or within animal organ development; negative regulation of neuron apoptotic process; and regulation of neuron projection development. Predicted to be active in nucleus. Is expressed in several structures, including anterior lateral plate mesoderm; anterior presumptive neural plate; nervous system; pericardial region; and pronephric duct. Human ortholog(s) of this gene implicated in several diseases, including Graves' disease; angiomyolipoma; carcinoma (multiple); eye disease (multiple); and reproductive organ cancer (multiple). Orthologous to human OGG1 (8-oxoguanine DNA glycosylase).

NR:

description
N-glycosylase/DNA lyase

GO:

id name namespace
GO:0006284 base-excision repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0003684 damaged DNA binding molecular_function
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity molecular_function

KEGG:

id description
K03660 OGG1; N-glycosylase/DNA lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247960.3 True 1707 mRNA 0.46 8 42862953 42873055

Neighbor

gene id symbol gene type direction distance location
trnar-ucg_3 NA coding upstream 24043 42838838 ~ 42838910 (+)
angptl7 angptl7,LOC107727987,LOC107594962 coding upstream 95365 42764003 ~ 42767588 (+)
LOC103040839 NA coding upstream 251935 42599341 ~ 42611018 (+)
espn espn coding upstream 330435 42431490 ~ 42532518 (+)
LOC103036755 NA coding upstream 785010 42076474 ~ 42077943 (+)
LOC103045241 NA coding downstream 42432 42915487 ~ 42947000 (+)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding downstream 173424 43046479 ~ 43057716 (+)
aaas aaas coding downstream 220364 43093419 ~ 43107630 (+)
LOC103047068 LOC108412532,LOC103047068,LOC108265240,LOC103370865,LOC100697880,LOC104931656 coding downstream 236363 43109418 ~ 43139115 (+)
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding downstream 369700 43242755 ~ 43279597 (+)
G58267 exosc10,LOC107724196,LOC107696929 non-coding upstream 213420 42628621 ~ 42649533 (+)
G58265 NA non-coding upstream 249394 42611649 ~ 42613559 (+)
LOC111192688 NA non-coding upstream 440140 42366132 ~ 42422813 (+)
G58227 NA non-coding upstream 456361 42406197 ~ 42406592 (+)
G58201 NA non-coding upstream 731919 42128190 ~ 42131034 (+)
G58444 NA non-coding downstream 297086 43170141 ~ 43172830 (+)
G58454 NA non-coding downstream 447701 43320756 ~ 43326039 (+)
G58460 NA non-coding downstream 473330 43346385 ~ 43349871 (+)
G58542 NA non-coding downstream 835661 43708716 ~ 43708986 (+)
G58564 NA non-coding downstream 1139075 44012130 ~ 44012825 (+)
G58256 ppih other upstream 236839 42577192 ~ 42626114 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 286250 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 580983 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 809064 42035839 ~ 42053889 (+)
G58025 NA other upstream 1424042 41438027 ~ 41438911 (+)
G58529 NA other downstream 787727 43660782 ~ 43661647 (+)
LOC111192736 NA other downstream 1562803 44435858 ~ 44446503 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 1706025 44579080 ~ 44583918 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 1722178 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 1979725 44852780 ~ 44866838 (+)

Expression


Co-expression Network