LOC103021400


Basic Information

Item Value
gene id LOC103021400
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43152960 ~ 43161328 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247976.3
ctgaactgctccagcagtgattgatctgctgtattgtttatttctctGTTTCCTGAAGGGGGCGGAGTTTGTGGAGTATCAGCGCTGCAGTTGATGAAACACCTCTCTCTGATTTTAGAGCGGAATAGAACAGCTCTGTATCCAGATGTTACAGGAGGAACAGCTGCAGAGGGGTTCCCAGTGAAGCAGAAGATGAAAGGGAAACGTGTAAACCTGTTGGGTTTGCTTTCGTTTTTTGTGATTCTTGGTTTTCTTCTGATTGTATATTTGGGTGCTGACATTTTAACAGGAACGCTGTATTTTAATTACCATCACTTTGTAAAAAAACTACAGAATTCCATAACTCCCATCGAACACTCTGAACATTTCATGATATCTGCGTTCCTTGACCACAGAGTTGATAGGGCCATTAGAGTTATCAGCATAATCAGAAGAGACAGTCTACAGCCACTTTACTGTATCTATCATCACTACTACAGCGACTACCAGGTTGTTACTGCTGAAGTGGAAATACACAGTGATCATTTTGGATTCCCGTTTGGAGCAGCGGATGTGCTGTGTAGGGGGCCAAGCACTCAGAATGCAAGCCATGTAGCTGTTTCAACTAATACATCCATCAGTTACAGCATGGACTTTCTGCCAGTACGGAACAGAGTGCCGACGGAAACATTTCAGTACAACTTCACAATCTGTATCTCCAGTCTGTTTAGAAATTACAACAATGCTCTGCAGTTTGCCCAAACCATGGAGATGTACAAGCTTGTTGGGGTGCAGCATGTAGTGATCTATAACACCAGCTGCGGACCTGACCTGGAGAAACTCCTACAACACTACCAGAGGGAGGGAATTCTGGAGATTGTTTCATGGCCTGTTGATCAGTTTCTTACCCCATCTGCAGGATGGAACTCACAAAAGCACCCAGGAGATCTCCACTACTACGGCCAGTTGGTAACACTCAATGAGTGTGTTTATCGACACATGTATCAGTCTAGATATGTTCTGTTGAATGACATTGATGAGATCATCATGCCTTATAAGCATGCTAACCTTCCATTAATGATGCAGGGTCTGCAACAGAAGCAGAAGAACGTGGGCGTGTTTCTTATAGAAAACCACATTTTTCCCAAGACACAGTTTGAGGAGAGCCATAAGTACAGAAGGCCAGAATGGAGAAATATTCCTGGTGTTAATATTATGGAACATATTTACAGAGAACCACAAAGACCACATATTATCAACCCCACAAAGTTGATTGTTAACCCCAGGTATGTGCTGCAAACATCAGTGCATTCCACTCTCAAAAGCCTGGGAGAAGTTTACAGGGTTCCTTTCAATGTGTGCCACATCATTCATGTGCGAGTAGCTCTACAAGGACGTCTTTCCAAAGAGCAACTGCTTGTAGACTCCAGGGTGTGGGACTTTGAGGATCAACTGGTACCAAATGTTGATAGAGCCCTGCAGTCAGCAGGTTTCAATTTATATGACCATTCAAGTTTTACACAAGCAACTGTACTGGAatagtaaattaaagtaaataaatcttCATGTGTGGTTGTGTATCTTCGCACAGTTATCTGGCAACAGTTGTATGAAATTAGTGAAATGCTGACATTCTCAGGTGAGCATGGCTTGGAAAGGATGACATAATTCCACACAGTTGTTTGACACATTAAGATgtaaagtaatatttaaaatggtcttttttattttgagttgataatgccttttttttatatacgcTACCAGTCAACAGTTTTAGAACAGCTCTATTGTTTAGTAGTTCAGTTCAGGAGTTTAAATGTACACGTTGTATTGTTAGAATTTCCCCAAATTCTCTCCTTATGTTTGCCTATATAATATGAAGTGGCTAGGTTGGGATGGCTCTTTTAAATCTCTAAATTGCTCTATATATGTCTCCATGTTTATAAACAACAATTGTGGATTAGAATATGTTGCTAGAAGTCAGTATGAAAGCTTTTATATGCATGTTTGTGCACTGCTAATGCTATGCCACATGGTATGTGCTAGCTAATTATGCCCTGTTTTTATATGCTTTCATACTAactaaaaagagaataaaagaggtGCCCACCTATCCAGAGCTAAAGgcagttctgttctgtttatCAGGCAttaggattttttattttatgtgttaaCATTTTTGTAGAGCAGTTAGGCTAAGTGGCTGaatagctaagctagttatgCTAATTTGAGCATGTTTACTCTAGAAAATGCctaattttatatatgttaCTCTGTTATTAAGTTCATTAGCGTGTGAGCCTGTAAATCTCTGTAAATATTGAACATGCCCTTTTAGACTTGTTGTGTAATGGAGAAAGAGGAGTGTGGAGAAGAAAAGAGGTGCACATCTTCCTAGAGCTAATTATTTCTGTTTATCAGATTAAAACCCAGTAAAAACACAATCCAGAGTCAATTTGATCTGTAACTACTGGTTACAGATCAGATTTACATTTAAGTTCACTGGATTTTTGCCTTTCTAGTTAATTACAGATCCTGAAGAGTTAGAAAACTGGGGGTGCTCTAAAACTTTAGACCGGTCCTTGTATATcttgttttacttttatttacttgcacagtatttctgttttttttgtcatgtttttgtttttaatatgtaataatgtgAGAATTATTTAAGCTCTCCCTCTCTACTGGAAATCCATGTCACTCTTTTACTTGTAGCACATGTTTACTGGATTAAAGTTGGAAAATTTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247976.3 True 2748 mRNA 0.39 2 43152960 43161328

Neighbor

gene id symbol gene type direction distance location
map3k12 map3k12,LOC107711606,LOC107715569,LOC107663586 coding downstream 65089 43063287 ~ 43087871 (-)
LOC103028227 LOC108432121,LOC108432118,LOC108432095,LOC108265470,LOC108265625 coding downstream 112974 43030331 ~ 43039986 (-)
LOC103043615 LOC108432095,LOC108432121 coding downstream 123883 43017361 ~ 43029077 (-)
LOC103044132 LOC108432121 coding downstream 144726 42996976 ~ 43008234 (-)
LOC103044416 sult1st3,LOC108432121,LOC108265623,LOC108432095,LOC108432118 coding downstream 160584 42979466 ~ 42992376 (-)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327 coding upstream 25932 43187260 ~ 43340380 (-)
zbtb34 zbtb34,LOC108412531,LOC107727329,LOC107723248,LOC107727326 coding upstream 184171 43345499 ~ 43366461 (-)
lmx1b lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 297031 43458359 ~ 43539305 (-)
LOC103023596 NA coding upstream 402404 43563732 ~ 43638989 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding upstream 757901 43919229 ~ 44038635 (-)
G58470 NA non-coding downstream 13677 43136244 ~ 43139283 (-)
G58430 NA non-coding downstream 60047 43092558 ~ 43092913 (-)
LOC111192735 NA non-coding downstream 199576 42952416 ~ 42953384 (-)
G58411 NA non-coding downstream 217763 42922459 ~ 42935197 (-)
G58400 NA non-coding downstream 236568 42843930 ~ 42916392 (-)
G58476 NA non-coding upstream 7228 43168556 ~ 43169692 (-)
G58475 NA non-coding upstream 8806 43170134 ~ 43171136 (-)
G58490 NA non-coding upstream 117464 43278792 ~ 43335618 (-)
G58509 NA non-coding upstream 213008 43374336 ~ 43395114 (-)
G58510 NA non-coding upstream 285188 43446516 ~ 43446724 (-)
G58435 aaas other downstream 45337 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 1754482 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 2396946 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 2973819 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 3033865 40117789 ~ 40119095 (-)
G58537 NA other upstream 520996 43682324 ~ 43682684 (-)
G58649 NA other upstream 1206572 44367900 ~ 44368368 (-)
G58678 NA other upstream 1312831 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 1424978 44586306 ~ 44622074 (-)
G58868 NA other upstream 1899781 45061109 ~ 45061674 (-)

Expression


Co-expression Network