LOC103027595


Basic Information

Item Value
gene id LOC103027595
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42062298 ~ 42067929 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247993.2
ATGCAGTGGCTcgccttttttcttcttcttttgaatGTCGCTAACTGGTTCAAGACCTCTTTTTTGGCATCTGAATTCAACCTGCAGGGAGATTATTTGTTGGGTGGATTATTTTcactaaatattgtttttcacCCAAAACGTCAGTCCTATCCAGTGGCCCTTGAATGTCAAAGGTACCAGTTTGATGAATCTGCTTATCAGATGTTCGAGGTGATGAGGTTTACTGTAGAGGAGATCAACAACTCCTCCACCCTCCTGCCCAACGTATCACTCGGCTATGAGATTTTTGACCACTGCTCAGACACGCAGAATTTCCCCTCTGTTTTTAGTTTCATGTCGCAGAACGGATCAGTTCCAGTGCTACAAAGTTACAACAACTACCAGCCCAAAGTCATTGCTGTAATAGGTCCATATGAAAGCACTACAACTATAACAGTGGCTCCATTTTTCATGATGAACCTTATTCCAATGGTTGATTATGGAGCATCAAGCTATGATTTATCAAACAAAGCTTTGTACCCTTCTTTCCTAAGAACGGTGCCTAGCAACAAAGACCTGATAGAGATTATTATTCGCATCATTAAGTGGTTTGGCTGGAACTGGGTTGCCTTTATTGGCAGCCTGGACGACTACAGTCGCGATGGCCTAAATTTATTTTACCAAAGTCTCAGACAAAATGGAATATGTATGGCCTATCAAGAAATGCTTCATTTGACCTCAGATTACCAAACAACACTTCGCAAAATTGACAAGTTAAACGTAAAGGTCATCGTGATTTTCTCTATGCAAGTGATTGCAGAGAACACAATCAAAGCAGctataaaatacaatatcagAAACAAAGTGTGGATTGCCGGTGAGGGCTGGGCTATGAATAAACAGCTTTTTCGTGAACCAGGGATAGAAAACATTGGGAAGATTTTTGGCATTACAGAACAATTCATGTCTTTGCCAGGATTAGACGACTTCATCTATAAATCACGGGAAAACAGTGAAGATGACGAAGGCCAGTGTCCACAGCCAACggaaaatgtgtgtaatcaAGTGTGCAATAATTGCACGAAGCTGAGTTCAGAAGATATAATTAATGAAGACCCTACATTCTCTTTTCCTGTCTATTCTGCCATCTATACTATGGCACATGCCTTACACAGTGTTCTACAGTGTGCTGCAAATGGCTGCAACAAGAGTACACCAGTCTACCCTTACAAGCTTCTGAAGGAAATTAAGAAGTTGAATTTTTCTCTGAATGGCCGGCAAGTACAGTATGATGGAAATGGTGATCCAACTGTCAGTTATGTGGTAGTCCTGTGGAATACTCAAGGCAGTTTTCCACCCTTTAAGGTGATTGGCTCATTTGAAACATATCCAGAAATTACTTTCACTATCAACAGCTCCCGCATACACTGGGATAACGACGGATCCGTGCCCTTTGGAAACTGCTCTATTGAGTGTAAAAATGGATTCCAAAGAGAATATGATCGCAATCACAAATGCTGCTTTAACTGTAAGATCTGCCCCGGTAACACCTATGTAAACTATACGAAGGATCCCGCAACTTGTTTTCCATGCAGTAAAGGGGAGTGGTCACCAGAGGGAAGCACATCCTGTCAGAAACGCATCATCATGTATCTCCCCTTTACCGAGCCTTTGTCCATATTGTTGATGGCATCTGCTTTTTCTCTGGAGCTGCTCTGCATAGCAGTTACAGTTCTGTTCTTATACAATTACAGCACACCAGTAGTGAAGTCTGCTGGAGGTAATATGTGTTTCCTCATGTTGGCCTCTTTGATAATGTCCAGCATCAGTGTATTCTTTTTCTTTGGGCAACCAACAGTGATCGCATGTACCTTCAGAAAtgtgatgttttgttttttctacaCCATCTGCCTTTCGTGTTTGACTGTACGCTCTTTACAAATTTTCTGGGTCTTCAAAATGGCCAATAGGTTTCCTGAGGTGTACAAATGCTGGGTGAAGTACAATGGCCAGTGGCTCCTCATTGCTGTTGTCTCTGttgttcagtttattttttgtgttctgtGGGTGACTCTGATAACCCCTACACCCTCAAAGGATGAAACATCTTATGATAACCAGATCATCCTTATCTGTTCTTCAGGGTATATGAACATATTTTATGTAGTGGTGTCCTTCATTTTGTCTCTCAGcattctctgtttctttttctcctaCATGTGTGCTGATCTCCCAAAAGACTACAATGAGGCTAAATCGATCACCTTCAGCATGCTTTTGTTCTACATCAgctggtgtgtttattttacagCAGATATGATTTATGACGGTGTGCAAATCCAGCTTATTAATTCGGTGGCACAGTTGTCCAGCTTGTATGGTATCCTCCTGAGCTACTTTATCCCCAAGTCTTATGTGATTGTTTTTCAGCCAAAGAAGAACACTCAGGCCTACTTTCAGACAACTATCCAGAGTTATACCCAAACCATCAGTAGAATGTAGGCAACAGTGATGTGAGTGTTTCActcaacaacaaaaataaaaaaaaaatta

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247993.2 True 2535 mRNA 0.41 6 42062298 42067929

Neighbor

gene id symbol gene type direction distance location
LOC103027292 NA coding upstream 2886 42042327 ~ 42059412 (+)
dpp9 dpp9 coding upstream 85250 41948019 ~ 41977048 (+)
LOC103035003 LOC108432140 coding upstream 127726 41910748 ~ 41934572 (+)
plch2 plch2,LOC107691057,LOC107602463 coding upstream 158585 41785640 ~ 41903713 (+)
mthfr mthfr,LOC107602465,LOC107687111,LOC107691055 coding upstream 609335 41440699 ~ 41452963 (+)
LOC103036755 NA coding downstream 8545 42076474 ~ 42077943 (+)
espn espn coding downstream 363561 42431490 ~ 42532518 (+)
LOC103040839 NA coding downstream 531412 42599341 ~ 42611018 (+)
angptl7 angptl7,LOC107727987,LOC107594962 coding downstream 696074 42764003 ~ 42767588 (+)
trnar-ucg_3 NA coding downstream 770909 42838838 ~ 42838910 (+)
G58177 NA non-coding upstream 11189 42050141 ~ 42051109 (+)
G58114 NA non-coding upstream 32244 42010046 ~ 42030054 (+)
G58096 NA non-coding upstream 298720 41758283 ~ 41763578 (+)
G58074 NA non-coding upstream 370910 41691121 ~ 41691388 (+)
G58054 NA non-coding upstream 483250 41578321 ~ 41579048 (+)
G58201 NA non-coding downstream 60261 42128190 ~ 42131034 (+)
LOC111192688 NA non-coding downstream 298203 42366132 ~ 42422813 (+)
G58227 NA non-coding downstream 338268 42406197 ~ 42406592 (+)
G58265 NA non-coding downstream 543720 42611649 ~ 42613559 (+)
G58267 exosc10,LOC107724196,LOC107696929 non-coding downstream 560692 42628621 ~ 42649533 (+)
ndufa7 ndufa7 other upstream 8409 42035839 ~ 42053889 (+)
G58025 NA other upstream 623387 41438027 ~ 41438911 (+)
LOC103032352 LOC103032352,LOC108432100 other upstream 684853 41374689 ~ 41377445 (+)
G57856 tp73 other upstream 1381743 40675040 ~ 40680555 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 1972027 39967090 ~ 40090271 (+)
G58211 acot7 other downstream 140792 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 466972 42534901 ~ 42576703 (+)
G58256 ppih other downstream 509263 42577192 ~ 42626114 (+)
G58529 NA other downstream 1592853 43660782 ~ 43661647 (+)
LOC111192736 NA other downstream 2367929 44435858 ~ 44446503 (+)

Expression


Co-expression Network