LOC103035969 (LOC103035969,LOC108430321,LOC108265984)


Basic Information

Item Value
gene id LOC103035969
gene name LOC103035969,LOC108430321,LOC108265984
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25642306 ~ 25651303 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254047.3
TCTGGAGGGATTGACCTCACTGTCATGCGATGTTGCGTTGCGGGACAGCGGTAACATCGGACCATTCTCCATGCGCAGCTAGAAAAAACAAATGATTCcagagctgattggttgagaaagATTTCGGTCGCTGTCTCTGAAACACGGattgatttcctttttcttttcttttttttaagaagggCATCATTTTAGAAATATGTGGAgtgagctgttattaatagccACGGCGCGCCGAGGCCTTTATAAGTGCGGGCACTGTTAGATTCAGCATGAAGACGGTGTGTTAGAAAGTATCTAATCTCCGGCCGCCGCGGGAATAATAAAGCGCTCAGCTCGTTTTCAGACATGTTCGAGGCGGAGGGGGTGTTCTACATCGTGCTGGATGTCGCCTGCGTGGTGCTGGCTGGACTCCCATTTGCAGTGCTAAATCTTCAGCATAATCCATTCAAAAGAGGATTCTTCTGCAGCGATGACTCCATCAAGTACCCCTTCAAAGAAGATACTATTTCATACCAGTTGTTAATGGGAATAATGAttccatttgttttgtttgtaATCGTTGTTGGGGAATGCTTGTCCATATATCTCAGATCCAGACCATCTTTCATGAATGACTACTTTGCATGCATCTACAAAGCAGTTGGCTCATTTGTGTTTGGAGCAGCAGTAAGTCAGTCCCTGACTGATATCGCCAAGTACACCATTGGTCGACTGAGGCCACACTTTCTCACCATATGCAAACCCAACTGGGGCCTTGTGGACTGTAAGTCAGGATATATTGAGAAATTCTCGTGCACAGGAGACAAGACGCTGGTCAATGAAGGGAGgcTTTCATTTTATTCTGGACATTCATCCTTTTCTATGTACTGTATGCTGTTTCTCGCActgtatttgcaatcaagaATGAAGGCAGAATGGGCACGATTGCTACGGCCAACGATCCAGTTCTTCCTTATTGCTGCGTCTGTGTATGTGGGCCTATCGCGGGTTTCAGACTATAAACATCACTGGAGCGATGTCCTCACTGGATTCATACAGGGAGCCATTGTGGCAATGTTTACtGTTTTCTGTGTATCAGACTTCTTCAAGGCTCAGCCCAAGGGAAACAAAGAGGAAATCTCACACACGACCTTACAGGATACGACAAGCAATGTTAACCACTATGGAAGCACAGAGTGATGCCAGGAGGAGTAATAACTTCAAGAACATTCACAGTGGCTGGCTGCCAATCTCCCTCTGTTTTCCACAGCAATACAATACAGGCTTTTGCACTGTAAAATCAGTGATCTGAAACTAAGTTCTAGACTCTTCTAGATCAccacatttattaaacattccAGTGAAACTGGTTTTCTTGGTTTGTACTTTTATTGCTATGTGAGCTTAGGCAAAGCTGTCAATATGTCAGTTCAAATTGtcattttatgttgtttttatttatatatttttttatttacaaagttAACCATTCAATAATCATTCCTCATTGTTTTCgcccaaaaagaaagaaaccacAGGAAACTATATTAGTGTCTTCGTGAATGAAAATGTGGTGGATTCTCTTGACATACAGGGCTTTTTCACGGATGTACTGTACTCTGCAAAAGTCTTGTGCAGcagtgaaaatataaaaagtgaaTACTATTGATCTCCACAGTAAAacactatataacattagaataaatacaaataaacagatgCTTTAATTTGTAGTCAAAATGTGATTTCGTATGTTGTTGGTTAGAAGAACACAGGTCTGGATGCTGGCTCTCCAGTAATTGTACGGATTTGTTCAggaaaagagacagatagatgatTGATTGGatggtttggatggatggatggaataaTAGATAGTCACATGACATTAGGGAGGGATGACAACACAATTTGGACATGTTCACTGGGAAGATGAGTTGTGTTGTGTGATTCTTGTAGGTAAAATCAAGGCCCTGCACTGTCTTTAGCTGCAGCGAAGCTGGATGAATCTACTGAGCAGTAGATTGTGGAGGGGGTGTGAAACGTTGTACAAGAGAGCAGAGTATATTTAGTGTCATTTTGTCATCAGTAGCAATCTGATTTGTCATCAGTAGCAATctgatcttattttttatttttttttataaaggatTGATAAACTAGTTAGTgactgtagtagtagtagtaaaagtaactaaataCTGGGCTTCCTTGTAAATTGGTCATAGTAACAAGctcatttgttcatttgtatttatttaattgttttagtgttttctgaAGGAATAACACATGCTGCTCAGATCAATAGTTTCATTATTTGATCAGATACCTAAGACCTTTGCACTGGGTTAAGATACTGACACAAAGAAAGCATCAAGAGTAGAAGAATAAAAATGGAGGATGTTTACTTCAATAAAAGCCTCTCTGAACAtaactctttatttttattattattataattatcattattattaattgtataTGGCAACAAGAACAAATATGCATAATGTGTGAGGTGAATTTGGCTTTTGGTACGTTTTTATGCataggtaattttttttttattattactttcttTTATTTGGTATGGATAAAAGAGTAAAGCTATTAAAGATAATAGATAAAGCCTTAGATGTAAGCCTTGCTTTTGTCAGTCTTTACATGTTTGTTACAATGTTGCACCCATGGTTATATCAGTACAATACGTCATTTGTATTGTAGTCCAATAAAGCATTTGTATTA

Function

NR:

description
phospholipid phosphatase 1-like

GO: NA

KEGG:

id description
K01080 PLPP1_2_3; phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254047.3 True 2727 mRNA 0.39 6 25642306 25651303

Neighbor

gene id symbol gene type direction distance location
LOC103021869 NA coding upstream 1453 25637459 ~ 25640853 (+)
LOC103036292 LOC103036292 coding upstream 9049 25625246 ~ 25633257 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding upstream 30189 25602401 ~ 25612117 (+)
nudt12 nudt12 coding upstream 110347 25522975 ~ 25531959 (+)
prdm6 prdm6 coding upstream 201096 25398983 ~ 25441210 (+)
aaed1 aaed1 coding downstream 879005 26530308 ~ 26534076 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding downstream 901994 26553297 ~ 26556972 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding downstream 967586 26618889 ~ 26640868 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding downstream 1005497 26656800 ~ 26663942 (+)
mrps27 mrps27 coding downstream 1020653 26671956 ~ 26680317 (+)
trnaw-cca_39 NA non-coding upstream 43558 25598677 ~ 25598748 (+)
trnaw-cca_38 NA non-coding upstream 44391 25597844 ~ 25597915 (+)
trnaw-cca_37 NA non-coding upstream 45222 25597013 ~ 25597084 (+)
trnaw-cca_36 NA non-coding upstream 46556 25595679 ~ 25595750 (+)
trnaw-cca_35 NA non-coding upstream 47389 25594846 ~ 25594917 (+)
G54489 NA non-coding downstream 77080 25728383 ~ 25728597 (+)
G54499 NA non-coding downstream 125791 25777094 ~ 25796977 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding downstream 164113 25815416 ~ 25815745 (+)
G54529 NA non-coding downstream 443049 26094352 ~ 26096365 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding downstream 990394 26641697 ~ 26643753 (+)
srp19 srp19 other upstream 92812 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 533435 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1351541 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3720712 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3895226 21673574 ~ 21747080 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 885749 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1311589 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1368941 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1381532 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 1559999 27211302 ~ 27222867 (+)

Expression


Co-expression Network