aaed1 (aaed1)


Basic Information

Item Value
gene id aaed1
gene name aaed1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26530308 ~ 26534076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254056.3
AACTGTGAGCGGTGAATAACTGTAACACACATCACAACTCTATAATAACTAGTTTAATCATCAGAAACACATAagtaacgttttttttgttatcgCGCTTGCTGTAACAAATAGAGATAATCTGAAACTCGGTCTAGAGTGTCTGAATGCAATCTAACCGTGATATTTTATTACATGCCCTTTatgtggaggaggagaactTTCTGCAGGTCTCAGAACTGAAAGCTCTGTTCAGCACTAGCCTCAGCAGGGCTGGGCGTGCTGAGTCCCTTCATCCGTCAAGAAAACGCCAAAAATAGCCCGGGCCTGGCGGTTTACCCTCCGGaaaaacacactgcacacacagcaGCGGAGCAATGGCTGCCGTTTTCCCAATAACCCAGCAGATCTCCAGTTCAGCCCCGCAGAGCAGCCGAGCCGCGGCCCAGCTCAGTGTCAGCGAGGCGGAGGACTGTCTGATATATGACCGGCACGGAGCTCCGGCTCCTTTTAGGAGTTTATTCCAGAGCAGCAGAGCTATCATCATTTTTGTAAGAAATTTCTTGTGCTTCGCATGTAAAGAATATGTTGAAGATCTAAGCAAGAtatcacagaaggcattactGGATGCTGGCGTCCGGTTGGTTGTCATTGGCCAGGCCTCTTGTTCTCATATAGAGGCATTCTGCTCTCTGACAGGATATCAGCATGAAATATATGTTGATCCAGAAAGACAAATCTATAAAAAACTTGGGATGAAAAGAGGAGAGACGTTTATGGAAACAGCCTCCAAGAGTCCACATGTCAAATCCAGTATGCTTGTTGGCAGTTTGAAGAGCATGTGGCGTGCCATGACCAGCCCTGTGTTTGATTTCCAAGGAGATCCTCTCCAGCAAGGAGGAGCTATCGTTGTTGGTCCAGGTTCTGATGttcattttgcacattttgacaTGAATCGATTTGATCAAGCACCCATCAACCAATTACTAGAGCTGGCTGGAATGCAGATGGTGGACTTTAACAGACATCCCAAAGTTATTGACATCTAAGAAAAGACATGATTGTGAAAAGACTAGGAATCacaaatttatttaaacaattaaccCATAGCTTAAGCTATTCAGTTATCATGTATTACCAGTATTTTATTCACACCTCAACGACAACTCAACCCAGTTGAGTTCAGTAAATTAATTTTGACATTTTGTTTAAGTTCATGCAATACAAAGTATATTCATTGCAGACTGAAGAGTGCTTAAACTGaaacatgtacagcctctaaaagaggatccagctcagttttactgaaggTAAGCTGCTGGTAGAGCAATGGAGACCTCAGAAGCTCATTCACCcagagtaaaaacaaaaaagtgaagCAAGCCCCGAAGCCAAATAGGAATGCAATAGAGGCTGTGCAAAAAATAGGATTAATAGAGGATTGGGGTTGGAACAGTGCAGAGAGCTTTGGGACCTGAAAAGGCTcgctgaacataacctggaatcggatttatGTGCTCTGacaggagaccgcatcacacctgcacagtttaaaatgattcttctgcatgctcacAAAATCCCATAGCTTAATCAGCTTTCTAGCTTTAAAGCTTTCTAAGAATTTTAAACCCCTTTCCTTCTCAACTGAGGCTAAACGGTGTCCAATCTTATCCACAAGAGACAAGTGGTGTTTTTTGTAATAAAGGAATTCATAATTTTCTAAA
>XM_007254057.3
TGAACTGTGAGCGGTGAATAACTGTAACACACATCACAACTCTATAATAACTAGTTTAATCATCAGAAACACATAagtaacgttttttttgttatcgCGCTTGCTGTAACAAATAGAGATAATCTGAAACTCGGTCTAGAGTGTCTGAATGCAATCTAACCGTGATATTTTATTACATGCCCTTTatgtggaggaggagaactTTCTGCAGGTCTCAGAACTGAAAGCTCTGTTCAGCACTAGCCTCAGCAGGGCTGGGCGTGCTGAGTCCCTTCATCCGTCAAGAAAACGCCAAAAATAGCCCGGGCCTGGCGGTTTACCCTCCGGaaaaacacactgcacacacagcaGCGGAGCAATGGCTGCCGTTTTCCCAATAACCCAGCAGATCTCCAGTTCAGCCCCGCAGAGCAGCCGAGCCGCGGCCCAGCTCAGTGTCAGCGAGGCGGAGGACTGTCTGATATATGACCGGCACGGAGCTCCGGCTCCTTTTAGGAGTTTATTCCAGAGCAGCAGAGCTATCATCATTTTTAATTTCTTGTGCTTCGCATGTAAAGAATATGTTGAAGATCTAAGCAAGAtatcacagaaggcattactGGATGCTGGCGTCCGGTTGGTTGTCATTGGCCAGGCCTCTTGTTCTCATATAGAGGCATTCTGCTCTCTGACAGGATATCAGCATGAAATATATGTTGATCCAGAAAGACAAATCTATAAAAAACTTGGGATGAAAAGAGGAGAGACGTTTATGGAAACAGCCTCCAAGAGTCCACATGTCAAATCCAGTATGCTTGTTGGCAGTTTGAAGAGCATGTGGCGTGCCATGACCAGCCCTGTGTTTGATTTCCAAGGAGATCCTCTCCAGCAAGGAGGAGCTATCGTTGTTGGTCCAGGTTCTGATGttcattttgcacattttgacaTGAATCGATTTGATCAAGCACCCATCAACCAATTACTAGAGCTGGCTGGAATGCAGATGGTGGACTTTAACAGACATCCCAAAGTTATTGACATCTAAGAAAAGACATGATTGTGAAAAGACTAGGAATCacaaatttatttaaacaattaaccCATAGCTTAAGCTATTCAGTTATCATGTATTACCAGTATTTTATTCACACCTCAACGACAACTCAACCCAGTTGAGTTCAGTAAATTAATTTTGACATTTTGTTTAAGTTCATGCAATACAAAGTATATTCATTGCAGACTGAAGAGTGCTTAAACTGaaacatgtacagcctctaaaagaggatccagctcagttttactgaaggTAAGCTGCTGGTAGAGCAATGGAGACCTCAGAAGCTCATTCACCcagagtaaaaacaaaaaagtgaagCAAGCCCCGAAGCCAAATAGGAATGCAATAGAGGCTGTGCAAAAAATAGGATTAATAGAGGATTGGGGTTGGAACAGTGCAGAGAGCTTTGGGACCTGAAAAGGCTcgctgaacataacctggaatcggatttatGTGCTCTGacaggagaccgcatcacacctgcacagtttaaaatgattcttctgcatgctcacAAAATCCCATAGCTTAATCAGCTTTCTAGCTTTAAAGCTTTCTAAGAATTTTAAACCCCTTTCCTTCTCAACTGAGGCTAAACGGTGTCCAATCTTATCCACAAGAGACAAGTGGTGTTTTTTGTAATAAAGGAATTCATAATTTTCTAAA

Function

NR:

description
PREDICTED: thioredoxin-like protein AAED1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254056.3 True 1706 mRNA 0.43 6 26530310 26534076
XM_007254057.3 False 1702 mRNA 0.43 6 26530308 26534076

Neighbor

gene id symbol gene type direction distance location
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding upstream 879005 25642306 ~ 25651303 (+)
LOC103021869 NA coding upstream 889455 25637459 ~ 25640853 (+)
LOC103036292 LOC103036292 coding upstream 897051 25625246 ~ 25633257 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding upstream 918191 25602401 ~ 25612117 (+)
nudt12 nudt12 coding upstream 998349 25522975 ~ 25531959 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding downstream 19221 26553297 ~ 26556972 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding downstream 84813 26618889 ~ 26640868 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding downstream 122724 26656800 ~ 26663942 (+)
mrps27 mrps27 coding downstream 137880 26671956 ~ 26680317 (+)
LOC103025471 LOC103025471,LOC108430308 coding downstream 157409 26691485 ~ 26701609 (+)
G54529 NA non-coding upstream 433943 26094352 ~ 26096365 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 714563 25815416 ~ 25815745 (+)
G54499 NA non-coding upstream 733331 25777094 ~ 25796977 (+)
G54489 NA non-coding upstream 801711 25728383 ~ 25728597 (+)
G54478 NA non-coding upstream 883563 25646115 ~ 25646745 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding downstream 107621 26641697 ~ 26643753 (+)
G54611 NA non-coding downstream 146555 26680631 ~ 26681078 (+)
G54614 NA non-coding downstream 147018 26681094 ~ 26681334 (+)
G54673 NA non-coding downstream 401854 26935930 ~ 26968187 (+)
G54680 NA non-coding downstream 411736 26945812 ~ 26946875 (+)
srp19 srp19 other upstream 980814 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1421437 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2239543 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 4608714 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 4783228 21673574 ~ 21747080 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 2976 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 428816 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 486168 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 498759 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 677226 27211302 ~ 27222867 (+)

Expression


Co-expression Network