snx2 (snx2)


Basic Information

Item Value
gene id snx2
gene name snx2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25323117 ~ 25346099 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260774.3
CTGAGCGGTTCCTGCGAATCACATGACAGCCTGGGAACCTCCTGACTCTGAGCAGCGAGGCGGTGAGGCTCTTATTGCCCGGAGAAGATGGCGGAAGAGAGGGAGCCTCCACCGCTGGCGGGAGACGCGGCTGAGACGGGGTTTAGGGAGCTGGAGGAGGGCGAGGACCTGTTTATCAGCACCGTCTCCACCATAGAGCAGCTCAGCCCAACGTCCCCAGAGCCGGCCAGCCTGCCTGCAGAAGACATCAGCACTAACTCCAACGGACCCAAGCAGGAAATATTATTAGACGATGACCAAGAGGACCTTTTTGCtgAAGCCACGGAAGAGGTGTCTCTGGACAGTCCAGAGAGAGAGCCCATTCTTTCTGATGGTCCATCTCCTGCCATCACTCCAGTGACTCCCACAGTCATAATCACTCCACGAGTCGATGCCTCCATGTTTGACAGATCTCCGGATGAGGATGAAGAAGCTGAGGAAAATGGGGACACCTTTGATCTGCAGATAATGGTATCTGATCCAGAGAAAGTGGGTGATGGAATGAATGCGTACATGGCGTACAAGGTTACCACGAAGACGTCCCTGAACCTCTTCAACAGAAACGAGTTTACCGTAAAAAGGAGGTTTAGTGATTTCCTTGGTTTGCACAGCAAATTAGCTTCTAAGTACCTGCACATTGGGTACATAGTCCCTCCAGCACCAGAGAAAAGCATTGTGGGAATGACCAAGGTCAAAGTTGGGAAAGAAGATCTGTCGTCTGCAGAATTTGTAGAGAAAAGAAGATCTGCCTTGGAAAGGTACCTGATGAGAACTGTGAATCACCCCGCACTGCTGAAGGATCCTGACGTCATTCAGTTCCTGGAGAGCACAGAGCTGCCGCGAGCAGTTAGCACCCAGGCACTGAGTGGGGCCGGAATATTGAGGATGGTAAACAAAGCGGCCGAAGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATGCGTGGTTtgaggagaaacagcagcagtttgagaACCTTGACGTCCAACTGAGAAAACTGCACGCCAGTGTGGAGTCATTGGTGTGTCACAGGAAAGAGTTATCTGTGAACACTGCGTCCTTCGCGAAGAGCGCTGCTATGCTGGGAAACTCTGAGGACCACACGGCCCTGTCTCGAGCTCTGTCTCAGCTGGCTGAAGTGGAGGAGAAGATTGATCAGCTGCATCAGGAGCAGGCTTACGCTGACTTCTATCTGTTCTCTGAGCTGCTGGGGGACTATGTGCGCCTCATCACCGCTGTCAAAGGTGTGTTTGACCACCGCATGAAAACGTGGTCCAAATGGCAGGATGCCCAGGTCATGctgcagaggaagagagaggctGAGGCTAAGCTACAGTACGCCAACAAGCCGGACAAGCTTCAGCAGGCCAAGGAGGAAATAAAggagGAGATTGAGGAGTGGGAGGCTAAAGtgcagcagggagagagagatttcgAGCAGATATCTAAAAACATTCGCCGGGAAGTGGGAAGATTCGAGAAACAAAGAGTGAAGGACTTCAAAGTTGTCATCATCAAATATCTAGAGTCGCTAGTACATACACAGCAGCAGCTGATAAAATATTGGGAAGCATTCCTGCCTGAAGCCAAAGCTATCGCATAAGCCGACAAACCCCCTGCGCACCTGCATCGGGACTGTTGATCacatttttttgccatttaatgtACAGCATAATCACGCGAAAAAAGGATGCACGGACTTAATGACCCTAAATACCACTCTAATAAAAACACTATGAATCTTTTAA
>XM_007260775.3
CTGAGCGGTTCCTGCGAATCACATGACAGCCTGGGAACCTCCTGACTCTGAGCAGCGAGGCGGTGAGGCTCTTATTGCCCGGAGAAGATGGCGGAAGAGAGGGAGCCTCCACCGCTGGCGGGAGACGCGGCTGAGACGGGGTTTAGGGAGCTGGAGGAGGGCGAGGACCTGTTTATCAGCACCGTCTCCACCATAGAGCAGCTCAGCCCAACGTCCCCAGAGCCGGCCAGCCTGCCTGCAGAAGACATCAGCACTAACTCCAACGGACCCAAGCAGGAAATATTATTAGACGATGACCAAGAGGACCTTTTTGCtgCCACGGAAGAGGTGTCTCTGGACAGTCCAGAGAGAGAGCCCATTCTTTCTGATGGTCCATCTCCTGCCATCACTCCAGTGACTCCCACAGTCATAATCACTCCACGAGTCGATGCCTCCATGTTTGACAGATCTCCGGATGAGGATGAAGAAGCTGAGGAAAATGGGGACACCTTTGATCTGCAGATAATGGTATCTGATCCAGAGAAAGTGGGTGATGGAATGAATGCGTACATGGCGTACAAGGTTACCACGAAGACGTCCCTGAACCTCTTCAACAGAAACGAGTTTACCGTAAAAAGGAGGTTTAGTGATTTCCTTGGTTTGCACAGCAAATTAGCTTCTAAGTACCTGCACATTGGGTACATAGTCCCTCCAGCACCAGAGAAAAGCATTGTGGGAATGACCAAGGTCAAAGTTGGGAAAGAAGATCTGTCGTCTGCAGAATTTGTAGAGAAAAGAAGATCTGCCTTGGAAAGGTACCTGATGAGAACTGTGAATCACCCCGCACTGCTGAAGGATCCTGACGTCATTCAGTTCCTGGAGAGCACAGAGCTGCCGCGAGCAGTTAGCACCCAGGCACTGAGTGGGGCCGGAATATTGAGGATGGTAAACAAAGCGGCCGAAGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATGCGTGGTTtgaggagaaacagcagcagtttgagaACCTTGACGTCCAACTGAGAAAACTGCACGCCAGTGTGGAGTCATTGGTGTGTCACAGGAAAGAGTTATCTGTGAACACTGCGTCCTTCGCGAAGAGCGCTGCTATGCTGGGAAACTCTGAGGACCACACGGCCCTGTCTCGAGCTCTGTCTCAGCTGGCTGAAGTGGAGGAGAAGATTGATCAGCTGCATCAGGAGCAGGCTTACGCTGACTTCTATCTGTTCTCTGAGCTGCTGGGGGACTATGTGCGCCTCATCACCGCTGTCAAAGGTGTGTTTGACCACCGCATGAAAACGTGGTCCAAATGGCAGGATGCCCAGGTCATGctgcagaggaagagagaggctGAGGCTAAGCTACAGTACGCCAACAAGCCGGACAAGCTTCAGCAGGCCAAGGAGGAAATAAAggagGAGATTGAGGAGTGGGAGGCTAAAGtgcagcagggagagagagatttcgAGCAGATATCTAAAAACATTCGCCGGGAAGTGGGAAGATTCGAGAAACAAAGAGTGAAGGACTTCAAAGTTGTCATCATCAAATATCTAGAGTCGCTAGTACATACACAGCAGCAGCTGATAAAATATTGGGAAGCATTCCTGCCTGAAGCCAAAGCTATCGCATAAGCCGACAAACCCCCTGCGCACCTGCATCGGGACTGTTGATCacatttttttgccatttaatgtACAGCATAATCACGCGAAAAAAGGATGCACGGACTTAATGACCCTAAATACCACTCTAATAAAAACACTATGAATCTTTTAA
>XM_007260776.3
ATGGCGGAAGAGAGGGAGCCTCCACCGCTGGCGGGAGACGCGGCTGAGACGGGGTTTAGGGAGCTGGAGGAGGGCGAGGACCTGTTTATCAGCACCGTCTCCACCATAGAGCAGCTCAGCCCAACGTCCCCAGAGCCGGCCAGCCTGCCTGCAGAAGACATCAGCACTAACTCCAACGGACCCAAGCAGGAAATATTATTAGACGATGACCAAGAGGACCTTTTTGCtgAAGCCACGGAAGAGGTGTCTCTGGACAGTCCAGAGAGAGAGCCCATTCTTTCTGATGGTCCATCTCCTGCCATCACTCCAGTGACTCCCACAGTCATAATCACTCCACGAGTCGATGCCTCCATGTTTGACAGATCTCCGGATGAGGATGAAGAAGCTGAGGAAAATGGGGACACCTTTGATCTGCAGATAATGGTATCTGATCCAGAGAAAGTGGGTGATGGAATGAATGCGTACATGGCGTACAAGGTTACCACGAAGACGTCCCTGAACCTCTTCAACAGAAACGAGTTTACCGTAAAAAGGAGGTTTAGTGATTTCCTTGGTTTGCACAGCAAATTAGCTTCTAAGTACCTGCACATTGGGTACATAGTCCCTCCAGCACCAGAGAAAAGCATTGTGGGAATGACCAAGGTCAAAGTTGGGAAAGAAGATCTGTCGTCTGCAGAATTTGTAGAGAAAAGAAGATCTGCCTTGGAAAGGTACCTGATGAGAACTGTGAATCACCCCGCACTGCTGAAGGATCCTGACGTCATTCAGTTCCTGGAGAGCACAGAGCTGCCGCGAGCAGTTAGCACCCAGGCACTGAGTGGGGCCGGAATATTGAGGATGGTAAACAAAGCGGCCGAAGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATGCGTGGTTtgaggagaaacagcagcagtttgagaACCTTGACGTCCAACTGAGAAAACTGCACGCCAGTGTGGAGTCATTGGTGTGTCACAGGAAAGAGTTATCTGTGAACACTGCGTCCTTCGCGAAGAGCGCTGCTATGCTGGGAAACTCTGAGGACCACACGGCCCTGTCTCGAGCTCTGTCTCAGCTGGCTGAAGTGGAGGAGAAGATTGATCAGCTGCATCAGGAGCAGGCTTACGCTGACTTCTATCTGTTCTCTGAGCTGCTGGGGGACTATGTGCGCCTCATCACCGCTGTCAAAGGTGTGTTTGACCACCGCATGAAAACGTGGTCCAAATGGCAGGATGCCCAGGTCATGctgcagaggaagagagaggctGAGGCTAAGCTACAGTACGCCAACAAGCCGGACAAGCTTCAGCAGGCCAAGGAGGAAATAAAggagTGGGAGGCTAAAGtgcagcagggagagagagatttcgAGCAGATATCTAAAAACATTCGCCGGGAAGTGGGAAGATTCGAGAAACAAAGAGTGAAGGACTTCAAAGTTGTCATCATCAAATATCTAGAGTCGCTAGTACATACACAGCAGCAGCTGATAAAATATTGGGAAGCATTCCTGCCTGAAGCCAAAGCTATCGCATAAGCCGACAAACCCCCTGCGCACCTGCATCGGGACTGTTGATCacatttttttgccatttaatgtACAGCATAATCACGCGAAAAAAGGATGCACGGACTTAATGACCCTAAATACCACTCTAATAAAAACACTATGAATCTTTTAA

Function

symbol description
snx2 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis and intracellular protein transport. Predicted to be located in cell projection; endosome; and membrane. Predicted to be part of retromer complex. Orthologous to human SNX2 (sorting nexin 2).

NR:

description
sorting nexin-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K17917 SNX1_2; sorting nexin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260774.3 True 1792 mRNA 0.50 16 25323117 25346099
XM_007260775.3 False 1789 mRNA 0.50 16 25323117 25346099
XM_007260776.3 False 1693 mRNA 0.50 15 25323204 25346099

Neighbor

gene id symbol gene type direction distance location
sncaip sncaip,LOC103399731 coding upstream 19002 25297056 ~ 25304115 (+)
znf438 NA coding upstream 607884 24641088 ~ 24715233 (+)
arhgap12 arhgap12 coding upstream 859952 24364844 ~ 24463165 (+)
kif5b kif5b,LOC108430866,LOC107753262 coding upstream 966453 24331622 ~ 24356664 (+)
LOC103038196 LOC108429178 coding upstream 1096283 24215123 ~ 24226834 (+)
prdm6 prdm6 coding downstream 52884 25398983 ~ 25441210 (+)
nudt12 nudt12 coding downstream 176876 25522975 ~ 25531959 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding downstream 256302 25602401 ~ 25612117 (+)
LOC103036292 LOC103036292 coding downstream 279147 25625246 ~ 25633257 (+)
LOC103021869 NA coding downstream 291360 25637459 ~ 25640853 (+)
G54310 NA non-coding upstream 97019 25225117 ~ 25226098 (+)
G54306 NA non-coding upstream 186123 25136435 ~ 25136994 (+)
G54303 NA non-coding upstream 224593 25098267 ~ 25098524 (+)
G54281 NA non-coding upstream 369286 24950612 ~ 24953831 (+)
G54280 NA non-coding upstream 379341 24943451 ~ 24943776 (+)
LOC111192642 NA non-coding downstream 11903 25358002 ~ 25378241 (+)
G54376 cep120,zgc:163014,LOC107712640 non-coding downstream 121955 25468054 ~ 25471996 (+)
LOC111192644 NA non-coding downstream 206443 25552542 ~ 25561370 (+)
trnaw-cca_1 NA non-coding downstream 218562 25564661 ~ 25564732 (+)
trnaw-cca_2 NA non-coding downstream 219143 25565242 ~ 25565313 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 214246 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1032352 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3401523 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3576037 21673574 ~ 21747080 (+)
fbxo11 fbxo11,fbxo11b,LOC108430631,LOC105896971,LOC107728720,LOC107582786,LOC107550041 other upstream 4497443 20794025 ~ 20825674 (+)
srp19 srp19 other downstream 199893 25545992 ~ 25549494 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 1190953 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1616793 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1674145 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1686736 27032835 ~ 27034938 (+)

Expression


Co-expression Network