cdo1 (cdo1,LOC102791980)


Basic Information

Item Value
gene id cdo1
gene name cdo1,LOC102791980
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9326700 ~ 9335342 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260785.2
CTGCTCATTCAGACAGGCTCGGATCTACAGGAGAAGCGCTAAAAATGGAGCAAACCGAATTAGTCAAGCCAGAGACCCTGGATGATCTTATTAAAATCCTGCACAAAATCTTTGAAGATGATCACGTCAATATTGAAGAGGTGCAGAGCATCATGGAGGCATATGAGAGTAACCCTCAAGAGTGGATGAAATTCGCCAAATTTGACCAATACAGGTATACCAGGAATCTCGTTGATGAGGGAAATGGAAAATTCAACCTTATGATTCTCTGTTGGGGTGAAGGCCACGGCAGTTCTATCCACGATCATGCGGAATCACACTGCTTCATGAAGCTCCTGCAGGGCCAGCTGAAGGAGACACTGTTCGAATGGCCTGACCGTAAATCACACGGAGACATGGTCCAGAAATCCCAGCGAATCTTGCTGGAAAACCAGTGTGCTTACATCAACGATTCCATAGGCCTCCACCGGGTAGAGAACGTCAGTCACACGGAATGTGCAGCCAGCCTGCACCTGTACAGCCCCCCCTTCCAGCAGTGTCAGACTTTTGACCAGCGGACGGGACACAAGAACACAGTCAAAATGACGTTCTGGAGTAAATATGGGGAGAGAACACCATTTGAAAATACAATCTCACAAGAAAACAACTAAGCTTGGGAAGACAACACATGGAATTCTCGATTTCGGAAATTCAGGCGTAACTAAGACGACAATAACTTCATAAAAGTAATAGGAAAAGAATGATTCAACACTTTTttctattcagtttttttttctgcaaaggACATTGAAGCGGGAACTCTGCGGTAATTAAAGAGGCTTTATGGTAACCCAGTGTAAGCTTGGCAAATGCTGCTGAACACAGGCCGAGGGCCTGAATAGCGGTATTAGGCTGGGCTGCACCATGAATCTGTTCTTTGTTCACTAGGTTCGAGGAGACCCCTTATCCGAGCAGCATTCCTATGTGTCTGTGACCTGTGTAATCACACTTTTGTACTGTTACGGGGCTGGGAGTTGTTTTGTTTAAAGTGATGGGTAATTTATGAGAACAAGCTATTTTCACTTTCCTTTACCTTGTGGTCTcatataaaaaaagcaattgcATAGTGTGCCCTCAATCAACATAATGCTTTCTTTTACGGAGCACTTTCTTTCGCAGATATGTTGattttctgtgtaaatgtagACAGTGTAAAATTTCTCAAATTTCATTTTCAGTCTGGAGATTTGCAagtttgttaatatttttttgtattgttttttattctattttactgCCTTTAATTCTTATTCGGTACATTTCATTTGTAGAGGAACAAAAAGGGTAATAACTGTTCTCTCTCAGTATGTTGTGAGCCtagatactgtatgtaaaattcaGTCTTACTTGAGAAGTCTTACAttagagtgattttttttctttttttttggaaaaaaggaGCAGAGGATAATGATATAGTGGAGCAGTGAGTAGTGCTTGTTCTTTTCCACAGGATTTTTTCCAGTTGTAACTGTAgaggtatttataggtttgAAAGGTTTGAacagcttttattattaatactgctTACTCCATCAGCTGAGCAGTGGTAATCTTGAAAATCTTGCTTTTACTGTACatcattaaatattatttctg

Function

symbol description
cdo1 Predicted to enable cysteine dioxygenase activity and ferrous iron binding activity. Predicted to be involved in L-cysteine catabolic process. Is expressed in gut; intestinal bulb; lens; liver; and yolk syncytial layer. Orthologous to human CDO1 (cysteine dioxygenase type 1).

NR:

description
PREDICTED: cysteine dioxygenase type 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046439 L-cysteine metabolic process biological_process
GO:0005506 iron ion binding molecular_function
GO:0017172 cysteine dioxygenase activity molecular_function

KEGG:

id description
K00456 CDO1; cysteine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260785.2 True 1638 mRNA 0.40 5 9326700 9335342

Neighbor

gene id symbol gene type direction distance location
sema6a sema6a,LOC106585847,LOC106580184 coding upstream 123571 9085038 ~ 9203129 (+)
hsd17b4 hsd17b4 coding upstream 330948 8976218 ~ 8995752 (+)
LOC103034488 LOC108437599 coding upstream 1057366 8264164 ~ 8269334 (+)
LOC103035131 LOC108437597,LOC108437601 coding upstream 1063970 8259603 ~ 8262730 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 1068748 8254568 ~ 8257952 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 10296 9345638 ~ 9351678 (+)
catsper3 NA coding downstream 17731 9353073 ~ 9354864 (+)
fem1c fem1c,LOC106580179,LOC107728259 coding downstream 22425 9357767 ~ 9364491 (+)
ccdc112 ccdc112 coding downstream 43784 9379126 ~ 9385691 (+)
pggt1b pggt1b coding downstream 50771 9386113 ~ 9405334 (+)
G50841 ap3s1 non-coding upstream 2537 9309260 ~ 9324163 (+)
G50822 NA non-coding upstream 72574 9253173 ~ 9254126 (+)
G50818 NA non-coding upstream 122483 9204016 ~ 9204217 (+)
LOC107197475 NA non-coding upstream 320054 9004992 ~ 9006646 (+)
G50770 NA non-coding upstream 380328 8945273 ~ 8946372 (+)
G50886 NA non-coding downstream 279186 9614528 ~ 9622057 (+)
G50887 NA non-coding downstream 279261 9614603 ~ 9617381 (+)
G50901 NA non-coding downstream 386003 9721345 ~ 9733234 (+)
G50907 NA non-coding downstream 464629 9799971 ~ 9803653 (+)
G50961 NA non-coding downstream 578811 9914153 ~ 9915227 (+)
G50583 LOC108437602,LOC103398889 other upstream 982186 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 1047944 8270248 ~ 8278756 (+)
G50568 NA other upstream 1105538 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1442642 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 2342439 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 308032 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 788378 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1352543 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2497339 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 2748738 12084080 ~ 12129300 (+)

Expression


Co-expression Network