tmed7 (tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005)


Basic Information

Item Value
gene id tmed7
gene name tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9345638 ~ 9351678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260786.3
ATTACGTCTGTGCGTGCTAGGTCATCGCCGCCGGTGCGCTTCCTTCATCCGGGTAGTGGTAGGAGTTGGGTTGTATGTTtgtagagctgctgctgctgctgatcctCGCTGTGCGGTGAGTTGTCTGAGATGGAGCGGTTGCGGGGCTGGACTGGgcggctgctgctgcaggtgcTGCTGTGCGGCTGGGTCTGGGGCTCCGAGCTCACCTTCGAGCTTCCAGACAACGCCAAGCAGTGTTTCTACGAGGACATTACAATAGGGACGAAGTGCACCCTCGAGTTTCAGgttgtgACAGGGGGTCATTATGATGTTGACTGTCGTCTGGAGGATCCAGATGGAACTGTTCTCTACAAAGAGATGAAGAAGCAGTATGACAGCTTTACTTTCACAGCTGCCAAAAATGGCACCTACAAGTTCTGCTTCAGTAATGAGTTCTCCACCTTTACCCACAAGACTGTATACTTTGACTTTCAAGTTGGTGAAGACCCTCCTCTCTTCCCCAATGAAAACAGAGTGACTGCACTCACTCAGATGGAATCAGCATGTGTCTCCATCCACGAGGCCCTGAAGTCTGTGATTGATTATCAGACGCACTTCCGTCTGAGGGAGGCTCAGGGCCGCAGCAGAGCAGAGGACCTCAACACCAGAGTAGCTTTCTGGTCCATTGGCGAGGCATTCATCCTGCTGGTGGTCAGTATTAGCCAAGTCGTTCTGCTGAGGAGCTTCTTTTCAGACAAGAAAACCACCACAACTCGCGTGGGATCCTAACGCCCCTAGGTCACCACTGATTTCAGTCACTCTCTTTACACACATGGGACTAAAGACAGCCACAGATGTCATGGTTCATTCTCTATTTTAGAACTCTGTACTCTGTAAGATTATTTAAAGATGTTATTGTTTGGCCTCGCATCTTTTAGCCCTGCTTATGGATTTAGGTTTCATATCCGGCAAGTGATATTTTCAATGTTAAAAAGTAAACGTCTTAATTtattatgtgagtgtgtgtttcatttttacactgtaagCAAACATTAAAGGTTAATTCTGTTCATTGGGTAATTGGAAAATGAATCTACTTAACACACACTTAGCTTTTCAAATATTGAAAACTGCTGATGGTGCTGACAGTGTTAAACATGTTGGaataaaaagttagtttatAGTCAGAGTGAAGGATTTCAGGACTTTTAGTTCCATGAAAAGAAGGtaatttgcattgtttttttttattattaagtgttGCTTCTCATGTCTTCTAATGTTTAGCTTTTTGCTGTGTTAAATCAAATCCCACGTTATCTTCGTGTAGTGGTGTAGGCACATATACTATTTTCTGTTGTCAACTGCTAGTTTGTGCTCAGTTGTTACATTCTTGAAATACATTTGTGGTCTAGGTTGGCTTAAACTTTTCAAAGCAAAATATAGAAACCAGGCATTTTTAGAAAGCAAAATcattttagttttgtattaGTCATAAAACATGAGATTCTCTTCATTATGACTCATTTTCTTACCGTACTtctttgtgtgtggtgttagtttTGGCCAAATGCAGGCAATTGTTGATTATGCAACAACACtccaaaatgttaaatattaagcTACATTTTGGCACAAAACTACTTTTCTTTTCAGTCTCTTATATGATTGCAGACACATAAAAACAGTATCTCAGGCCCTCTTCCTAGAGAACCGCATTCAGGCGGAGTTCACCTGCAGCTCTAATTAAACACAACTTGCTTTCAGCATTCGGGTGTTCTTGAAAACATAAATAAGGTACATCAGATGAACGCCAGCATAAGGGTGGTTCTACTTGGGATCTACAGACTGCTTTTTTTACATAACAGTACACAAAATTATGTGATGTCAGAAGCACTGGATATTTTTATGAATAGGGTcatgggggagggggggggaaTAAGATttcatgtgtaaaaaaaaaaagaaaaaaaggacatttCATTAAGCAAAGGATAATCTTTCGGTGAccagaagttttttttgtcctaTGAGTCATTTTAAAAGCTGCAGACAGAATGTTTCACACACTACAGCCCATATGCATGAATGTAAGGAAGCCTTAGTACTGCAGCAGAGACACCTTCACTCTGAAGAGATCTGTCAATTTCTTGGTGGCCATTATCAGTCCAAAGGCCATTATccaacaaaaattaaaatgtatattgatCTGATTGTCAAAaaattagtttgttttattggtGACTAATATCTACAACTTGtgatgaaaaatatatagttaaaaCTGTTAGCCACAATTGTAAACTCTGGTTTAGGTGACATGATTTGGCTAAGTATGGGTTAAGTggtacataaaatacatattgaTCATTGTCTAGAAGTTTATGTTCACAGTTGTTATTCATGAAACTGCTTCACTGAAGCGTGTTCCAGTTCTTAACATATATTTTCCTCACAGATTCATTGTACACTGGTTTATTTCTGTGAATTTCAAGCTGATAAACAAGACCTCTTGTATGCTTCTATACATCACTAGCCACTCTGtggttttacagtgtgtgatTTCTAGTGTACAGAATGAATAAATCTGAGATCCACA

Function

symbol description
tmed7 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to several human genes including TMED7-TICAM2 (TMED7-TICAM2 readthrough).

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 7-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20349 TMED7; p24 family protein gamma-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260786.3 True 2581 mRNA 0.40 4 9345638 9351678

Neighbor

gene id symbol gene type direction distance location
cdo1 cdo1,LOC102791980 coding upstream 10296 9326700 ~ 9335342 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding upstream 142509 9085038 ~ 9203129 (+)
hsd17b4 hsd17b4 coding upstream 349886 8976218 ~ 8995752 (+)
LOC103034488 LOC108437599 coding upstream 1076304 8264164 ~ 8269334 (+)
LOC103035131 LOC108437597,LOC108437601 coding upstream 1082908 8259603 ~ 8262730 (+)
catsper3 NA coding downstream 1395 9353073 ~ 9354864 (+)
fem1c fem1c,LOC106580179,LOC107728259 coding downstream 6089 9357767 ~ 9364491 (+)
ccdc112 ccdc112 coding downstream 27448 9379126 ~ 9385691 (+)
pggt1b pggt1b coding downstream 34435 9386113 ~ 9405334 (+)
trim36 trim36 coding downstream 59853 9411531 ~ 9441528 (+)
G50841 ap3s1 non-coding upstream 21475 9309260 ~ 9324163 (+)
G50822 NA non-coding upstream 91512 9253173 ~ 9254126 (+)
G50818 NA non-coding upstream 141421 9204016 ~ 9204217 (+)
LOC107197475 NA non-coding upstream 338992 9004992 ~ 9006646 (+)
G50770 NA non-coding upstream 399266 8945273 ~ 8946372 (+)
G50886 NA non-coding downstream 262850 9614528 ~ 9622057 (+)
G50887 NA non-coding downstream 262925 9614603 ~ 9617381 (+)
G50901 NA non-coding downstream 369667 9721345 ~ 9733234 (+)
G50907 NA non-coding downstream 448293 9799971 ~ 9803653 (+)
G50961 NA non-coding downstream 562475 9914153 ~ 9915227 (+)
G50583 LOC108437602,LOC103398889 other upstream 1001124 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 1066882 8270248 ~ 8278756 (+)
G50568 NA other upstream 1124476 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1461580 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 2361377 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 291696 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 772042 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1336207 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2481003 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 2732402 12084080 ~ 12129300 (+)

Expression


Co-expression Network