fem1c (fem1c,LOC106580179,LOC107728259)


Basic Information

Item Value
gene id fem1c
gene name fem1c,LOC106580179,LOC107728259
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9357767 ~ 9364491 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260788.3
CGGGGCAGAGAACTCCGCTTTAACAGAGGAGCTGAACGCAGATGGCAGCACACACAGCGTTATTAGCCTAGCTGACTGAATTCGGGAGTTAAATAACCGAGTGAAGTGTCGCGTCAGGGCGAGTTTGGACTGTTTGGAGTTTATAATCGGAGTCGGGGAGAAGCGCTGTGGCCCTGTGGGCTCGCTGAGCTCGATCAGGCTTCAGCTGGCCGAGCAGTTGGCAGCAGGAAGCAGGAGGAGAAGCGGGGGTGGAGAGCCGTGGCGAGAATCCAGCTGGaggatttctctctctctttttccatgATCTTCTGCGACACCTTTTAATGTAGGTAATGAACAGCGTTTCGACGGCGGTCGTGGATTTCTCCGTCTTCGTGTTGCCATGATTGTGGTAACGTTAGTCCAGTGAGGGAGGTGTGAAAACCGAGAAGCGGATTTAGGACCCGACGACAAAAAGgaagCAGCAACCAAATGCAATggatttaaaaacagcagtgttCAATGCAGCCAGAGATGGCAAGCTCAAGTTATTGCAGAAGCTTTTGGAGAATAAAACTGACCGTGAGGTTACGAAGCTGATGGCTGAAAAGACCAATGGAGCTACACCACTGCTGATGGCTTCTCGGTATGGGCACCTTGATTTGGTCGAATACCTTCTGGAATGCTGCTGTGCACCTGTTGAGGTGGGAGGCTCTGTCAATTTTGATGGCGAGACGATTGAAGGAGCTCCTCCGCTGTGGGCCGCTTCAGCGGCTGGACATTTGAAAGTTGTGCAGTCTTTGCTGGGACACGGTGCCTCTGTGAACAATACTACACTTACAAACTCTACCCCTCTCAGAGCCGCCTGCTTTGATGGCCATCTCGATATTGTCAGGTACTTGGTGGAGCACAAAGCGAATTTGGAGGTGGCCAATCGACACGGCCATACATGCTTGATGATTTCCTGTTATAAAGGCCACAAGGAGATTGCTCAGTATCTGCTGGAAAAAGGCGCTGATGTTAACAGGAAAAGTGTGAAAGGTAACACCGCCTTACATGATTGTGCTGAATCCGGAAGCTTGGAGATCATGAAAATGCttctgaaatatggtgccacaATGGAAAAGGACGGTTACGGAATGACCCCGCTTCTCTCAGCCAGTGTGACTGGGCACACTAACATAGTAGATTTCCTCACGCAGCACCCTCAGACAAACAAAATTGAACGGATTAATGCGCTGGAGTTGCTAGGAGCTACGTTTGTTGACAAAAAGAGGGATCTTCTAGGTGctctaaaatactggaaaagaGCCATGGACATGCGATACAGCGACGTCAGCAACATCTTAGTAAAAGAAGAACCTAAGGAATTAATAATGGCGTATGATTATGCCAAGGAGGTTAGTACCATTGAGGAGCTGGACAGCTTAATTTCGGATCCCGATGAGATGAGAATGCAGGCTCTTCTTATTAGAGAACGTATCCTCGGCCCCTCACATCCAGACACGTCGTACTACATTCGCTACAGAGGAGCAGTTTACGCAGATTCAGGGAATTTTGAGAAATGCATCAACTTATGGAAGTATGCTCTGGACATGCAGCAGAACAACTTGGACCCCCTCAGTCCCATGACAGCGAGCAGCCTGCTCTCATTTGCTGAGCTCTTCTCCTTCATGCTTCAAGACAGAGCAAAAGGCCTGCTGGGAACGTCCGTCTCTTTCGATGACCTCATGGGTATCCTCAGCAAGAGCGTGCTGGAGATTGAGCGAGCTATGAAACAGCCCCACCCAGGCCCGGACCCCACTCAACTTAGCAAAGCACTTTCCATCATCCTGCACCTTATCTGCCTGCTGGAAAAAGTTCCCTGTACTGTGGAACAGGATCACTTCAAGAAAGAAACCATCTATAAGTTCCTCAAGTTGCACCCATGTGGTAAGAATGGTTTCAGCCCCCTGCACCTTGCCGTGGATAGGAATACTACATGCGTGGGGCGATACCCGGTTTGTAAGTTCCCCTCTTTCCAGGTGACCTCTATTCTTTTGGAGTGCGGTGCTGATGTGAACTGCCGAGACGAGGATAACAACAGTCCTCTGCATGTAGCCGCCTCCAACAACCACCCAGACATCATGAACCTGTTGATTGCCTGCGGAACGCACTTTGACAGCACCAACTCCTTCAAACAGACTGCCTGTGACTTGCTTGATGAGAAGGAGATGGCCAAGAACCTGATCCAGCCTATTAATCACACCACACTACAGTGTTTGGCTGCAAGGGCCATTATAAAGTACGATCTCACATATAGGGGAAATATCCCAGAGAAGCTGGAGGCCTTTGTGCTGCTACACAGATAATGACTGAGAGGAACTGAAGCGTTTGGTGAAAAACGTCTTGGAGTCTAAAACACGTTTTAAGTACCTCCATGCTCCTCATGTGCTGTTTGTACAGAATAAGAAGTCTAGCACAGACGTTGATCATAGATTGATTCTATTCTGTGGGCATGCCTAATATTTTTAACAGATTCTAACCCTCAGATGCTTATTTCTTGCTGTTTGTCAACATCTTTTGCATTTCTGCCTGATCCCCCTGCTTTGTATTTTCCCCCTCAATGCAAAGGTGGTGGGACCTGGCTGGTTTGATCTTCATTTTCCTGCTGTTATCTGGACACAGTACTGTTCTAATACTGCTGTTTTTACAAATTCATGGTTATGCTCTCATTGCATATTTTTTGTCGAGTGGAATGGAATGCACTCATTACTCCCTTCAAGCATAAAGAAGCTTTATGATGTGGTTAATGGTTGCGAATACCATAAGTGCTTTATTTCTCCTATGCACAGCCTATGATCTTGCGACTGTTCTGTGTTACTGGACTGTGCCACTGTTTTGTAACTGCCTGTTTTATTTACATCTGTCATTTTTTCCCCCTCATCCTCAATCTTCCTTAACTTGAAATGCAACTCAGTAAGTAAATCTGCAGCGAGGAAGCAATTGAGGTTTTCTTGAGTAATCAAGTTTTCAGCGATAAAGCCTGGACATTTTTCAAAGCTCATTTGCGAGGACCTTTGAGCCTCATGGTTTTAAGGCAAGCTATAAAATTGAGACAAAGGTTGGTTCCATCTTCTTAATGCACAGCATGTAGTTAAGTTATTGTAGTGCCTGTGTCTAATCAAGGCCGGTATCATCCACAGATCTGCTCTACTGGGACTTCTAACTCCTTTTGATGACACATTTTGTAGGAAGAGGATGTACCTTTAGTGAAGTTCTTGCACATGTTTTTACTCCAGCTACAGTTGTGCATTTTGAAAATAAGGGCTTTTCATACTTAAGAGCACATTTCACAAGCAAAAGAAACAAATGTACATTACTAGCTACCAGAGAAATTGCACTTTATTGCAGTGGCGTTTGAAAATTCCTTTTACAATGGCTTGTCAATGTCCTCAGAGCATATTTAACAATAAACCTCTGTTGCACTTCCA

Function

symbol description
fem1c Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of ubiquitin ligase complex. Orthologous to human FEM1C (fem-1 homolog C).

NR:

description
PREDICTED: protein fem-1 homolog C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260788.3 True 3452 mRNA 0.46 3 9357767 9364491

Neighbor

gene id symbol gene type direction distance location
catsper3 NA coding upstream 2903 9353073 ~ 9354864 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding upstream 6089 9345638 ~ 9351678 (+)
cdo1 cdo1,LOC102791980 coding upstream 22425 9326700 ~ 9335342 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding upstream 154638 9085038 ~ 9203129 (+)
hsd17b4 hsd17b4 coding upstream 362015 8976218 ~ 8995752 (+)
ccdc112 ccdc112 coding downstream 14635 9379126 ~ 9385691 (+)
pggt1b pggt1b coding downstream 21622 9386113 ~ 9405334 (+)
trim36 trim36 coding downstream 47040 9411531 ~ 9441528 (+)
ccser1 ccser1 coding downstream 82673 9447164 ~ 9612410 (+)
LOC103021556 LOC108426667 coding downstream 681510 10046001 ~ 10115996 (+)
G50841 ap3s1 non-coding upstream 33604 9309260 ~ 9324163 (+)
G50822 NA non-coding upstream 103641 9253173 ~ 9254126 (+)
G50818 NA non-coding upstream 153550 9204016 ~ 9204217 (+)
LOC107197475 NA non-coding upstream 351121 9004992 ~ 9006646 (+)
G50770 NA non-coding upstream 411395 8945273 ~ 8946372 (+)
G50886 NA non-coding downstream 250037 9614528 ~ 9622057 (+)
G50887 NA non-coding downstream 250112 9614603 ~ 9617381 (+)
G50901 NA non-coding downstream 356854 9721345 ~ 9733234 (+)
G50907 NA non-coding downstream 435480 9799971 ~ 9803653 (+)
G50961 NA non-coding downstream 549662 9914153 ~ 9915227 (+)
G50583 LOC108437602,LOC103398889 other upstream 1013253 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 1079011 8270248 ~ 8278756 (+)
G50568 NA other upstream 1136605 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1473709 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 2373506 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 278883 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 759229 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1323394 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2468190 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 2719589 12084080 ~ 12129300 (+)

Expression


Co-expression Network