prdm6 (prdm6)



Basic Information


Item Value
gene id prdm6
gene name prdm6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25398983 ~ 25441210 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007260803.3
cacacacacacacatacacacgcgcGCGCACCGACTCTCCGGTCAACACTAGGATGGTGTGAGAGTCTGGGAATTACAGTTTACACTCAGCGGCCGGACACGCGCTCTCGAGCGAAGAGGTGGCGTTTTTTGAAATGCTGAAGCACGGGGAGCCCAGCGGTTCTGCTTTCCTCAAAGTGGACCCGGCGTACATCCAGCACTGGCAGCAGCTCTTCCCGCACAGCCAGCTCAAACATGCGGCCCTGGCGCAGCTGCCCTTGCCGGCCGACAGCCTCCGACAGCGGCCGGGCCTCGTCTCCTCGTCCTCCTCTTCGTCGGCAGCTGCTGCTTTGACACCATCCTCGaactcgtcctcctcctcctctgcctCCTCCTCATCCGCCTCACTGACTCCCTCCGCTTCCTCCGCGGCGGTATCGTCTCTGGCGGGCTTTACGCAGCTCTCCGTGCCGCAGGTCGCGCTCTTCGGACAGACTCTCTGCCCCTCCGAGGCGCTGCCGGGGCTGGAGGACGGCGCGGCCGCGGCCAAAGAGCTGTGCGCTCCGGCCAGCCTGAAGAGCGACCGGGGCTCCCGGTTCAGACTCACCTCCGAGGAGCTGGACTATTACCTGTACGGACAGCAGAGGATGGAGATTATACCTCTCAACAACCACGCCGGGGACGTCAACAACCGTTGTGACATGTGTGCGGACAACCGGAACGGGGAGTGCCCCATGCATGGGCCCCTGCACTCCCTGCGGCGGCTGGTTGGGACCAGCAGCGCCTCAGCCACCGTGCCTCCTCCAGAGGTTCCTGAGTGGCTGCGGGACCTGCCCCGAGAGGTCTGCCTCTGCACCAGCACTGTCCCCGGCTTGGGCTATGGGATCTGTGCTGCCCAGCGCATCCCTCAGGGCACCTGGATCGGCCCGTTTCAGGGTGTCCCTTTACTGCTGGACAAGGTGCAGTCCGGAGCGGTGAGGAACACAAGACACCTATGGGAGATCTACGACCAGGAGGGCACGTTACTGCACTTTATCGATGGCAATGAACCAAGCAAGTCGAGCTGGATGAGATATATCCGCTGTGCCAGACACTGTGGGGAACAGAACATGACAGTTGTTCAGTACagATCGTGTATTTTCTACCGGGCCTGCATGGACATTCCACGAGGAACCGAGCTCCTTGTCTGGTACAATGACAGTTACACATCCTTCTTTGGCATCCCCCTGCAGTGCATCGCACAAGATGAAAACTtgaatgtGCCATCTACTGTAATCGAGGCCATGTCCCGACAGGAGAGCCTGCAGCCCTTCAGCAAGACGTCCAAATCCTCCTCCAGCATTCTGCAGCGCTCCATGGTCTTCCCTCACTCGCCCTGCTCTCGGACCTTCTCTCTCCTAGACAAGACAGGCAGCACAGAGTCCGGCTTCAACCAGCTGAGCGCCAAGAACCAGCGAGTGCTGGCCAGCCCCACCTCCACCAGCCAGCTTAACACAGAGTTCAGCGACTGGCACCTGTGGAAGTGTGGCCAGTGTTTTAAGACCTTCACTCAGCGTATTCTTCTACAAATGCACGTGTGCACACAGAACCCTGACAGaCCGTATCAGTGTGGACACTGCTCCCAGTCCTTTTCCCAGCCCTCCGAGCTCCGCAACCACGTGGTCACACACTCCAGTGACAGGCCCTTCAAGTGTGGCTACTGTGGACGAGCTTTCGCCGGGGCCACCACCCTCAACAACCACATCCGCACACACACCGGGGAGAAGCCATTCAAgtgTGAGCGGTGCGATAGGAGCTTCACGCAGGCCACGCAGCTCAGCAGACACCAGCGGATGCCCAACGAGTGCAAGCCCATCAGCGAGAGCAGCGAATCAATTGAGGTGGATTAGCTGATTGACCGAGCCGGAATTAAACGGCGAGGGAAAATCATGATTAAATGTCACGGACACTTAAGCAAAACCAAAGATTTCCTCTGAGAAACTCTCAATCAGCCCTAGAAAACCAAAAGcagtaataaaataagtaaGATGTTAAAAGCTATCGATCCTGACACAGATACGGGACTGGACGTGGCAGGGGATGGGAGGGGAATACGGAAAATTGAAGGTAAGGGGGTATTAGAACGACAAGACAAGATTATTTATTCATGACTTGGAGAATCATGGTTCTGttaaaaaaggcacaaaagCTTTATGAAATAGGCACAAGGGTGAGTATAACCCTAGATTTATCAGTTTAGTTTTCCGACCACTTGAAGCCAAactcaaaaaatagaaaattcacTTAATTATTTGATAATTTTCCCATTTGGTGTAGTATtgaagaaatgtatttttattcattttggcAATTTTCTAGGttttcatttcttcatttcATTAGAAATAAAACACCTAAGTGAAAtaagaaactagaaaactagaaaaataaaagcatttctgTTTTACTATACCAAATAGGAAAATATGAAGTAATGAAGTTGTATTTTTGAATGTAGCCTCAAACAGTCAGAATATTAAAGTGATAAAAGTTACACTCACCCACAAGAAaccaaaacatgttttttttttttactttatttcttagTCTTTCTTGTACTCTGTACAATAAAACCAAAGTGAAGAGACCTGAGGGGTGCATGAATGGACACTCATCAAAAAACGAGAATGCAGAATATCTGTATAATCGCACCAGTTAAGAAACAAGATTTTTGAGGGAagcaatttttgttttcaccAAAAACAAAGGAATAtcctgtataaaatgtaaattctgAATTATATTTCTCTCATATCATGCTTTTTGGCACTTTTTGACTgtcattatttaatatttgggTTGAATATTGCTCCACAATGTAATTatggagaatttttatttaagtctatggcaaaagaaaaaaaaaatcaaatgaaatgaaataaataaataaataaaagaacccTGTTGCTATatatgaaagaaagagaaaagcacaTAAAAAGTGATATATAGATCTAATTGAGGCTGTTCTGtcattcataaaaaaacactgcttttataGCCGTGCTCCTTTCATTTGGAGTGTGTGGCCACTGAATGTTGCATTTTTTTCAGAAAGAATCTTTAATATCATTATTCCTAGACAAATAGTACAGTATCTGTTTGCCAGACTCTGCGGAGGATTTATCTTTCCAAATCCAGAATGTACATAGCCTTATTTTGACATACTTTTTGctaatcaaaaacacaaaagactgaGCAGCTCAGTCTCAGATTATTTAACATAGTATTTGACAGAGTGtcaaaaatatattgaataaaaaaaaa
>XM_022670394.1
cacacacacacacatacacacgcgcGCGCACCGACTCTCCGGTCAACACTAGGATGGTGTGAGAGTCTGGGAATTACAGTTTACACTCAGCGGCCGGACACGCGCTCTCGAGCGAAGAGGTGGCGTTTTTTGAAATGCTGAAGCACGGGGAGCCCAGCGGTTCTGCTTTCCTCAAAGTGGACCCGGCGTACATCCAGCACTGGCAGCAGCTCTTCCCGCACAGCCAGCTCAAACATGCGGCCCTGGCGCAGCTGCCCTTGCCGGCCGACAGCCTCCGACAGCGGCCGGGCCTCGTCTCCTCGTCCTCCTCTTCGTCGGCAGCTGCTGCTTTGACACCATCCTCGaactcgtcctcctcctcctctgcctCCTCCTCATCCGCCTCACTGACTCCCTCCGCTTCCTCCGCGGCGGTATCGTCTCTGGCGGGCTTTACGCAGCTCTCCGTGCCGCAGGTCGCGCTCTTCGGACAGACTCTCTGCCCCTCCGAGGCGCTGCCGGGGCTGGAGGACGGCGCGGCCGCGGCCAAAGAGCTGTGCGCTCCGGCCAGCCTGAAGAGCGACCGGGGCTCCCGGTTCAGACTCACCTCCGAGGAGCTGGACTATTACCTGTACGGACAGCAGAGGATGGAGATTATACCTCTCAACAACCACGCCGGGGACGTCAACAACCGTTGTGACATGTGTGCGGACAACCGGAACGGGGAGTGCCCCATGCATGGGCCCCTGCACTCCCTGCGGCGGCTGGTTGGGACCAGCAGCGCCTCAGCCACCGTGCCTCCTCCAGAGGTTCCTGAGTGGCTGCGGGACCTGCCCCGAGAGGTCTGCCTCTGCACCAGCACTGTCCCCGGCTTGGGCTATGGGATCTGTGCTGCCCAGCGCATCCCTCAGGGCACCTGGATCGGCCCGTTTCAGGGTGTCCCTTTACTGCTGGACAAGGTGCAGTCCGGAGCGGTGAGGAACACAAGACACCTATGGGAGATCTACGACCAGGAGGGCACGTTACTGCACTTTATCGATGGCAATGAACCAAGCAAGTCGAGCTGGATGAGATATATCCGCTGTGCCAGACACTGTGGGGAACAGAACATGACAGTTGTTCAGTACagATCGTGTATTTTCTACCGGGCCTGCATGGACATTCCACGAGGAACCGAGCTCCTTGTCTGGTACAATGACAGTTACACATCCTTCTTTGGCATCCCCCTGCAGTGCATCGCACAAGATGAAAACTtgaatgtGCCATCTACTGTAATCGAGGCCATGTCCCGACAGGAGAGCCTGCAGCCCTTCAGCAAGACGTCCAAATCCTCCTCCAGCATTCTGCAGCGCTCCATGGTCTTCCCTCACTCGCCCTGCTCTCGGACCTTCTCTCTCCTAGACAAGACAGGCAGCACAGAGTCCGGCTTCAACCAGCTGAGCGCCAAGAACCAGCGAGTGCTGGCCAGCCCCACCTCCACCAGCCAGCTTAACACAGAGTTCAGCGACTGGCACCTGTGGAAGTGTGGCCAGTGTTTTAAGACCTTCACTCAGCGTATTCTTCTACAAATGCACGTGTGCACACAGAACCCTGACAGaCCGTATCAGTGTGGACACTGCTCCCAGTCCTTTTCCCAGCCCTCCGAGCTCCGCAACCACGTGGTCACACACTCCAGTGACAGGCCCTTCAAGTGTGGCTACTGTGGACGAGCTTTCGCCGGGGCCACCACCCTCAACAACCACATCCGCACACACACCGGGGAGAAGCCATTCAAGTAAGTAACAgtgTGAGCGGTGCGATAGGAGCTTCACGCAGGCCACGCAGCTCAGCAGACACCAGCGGATGCCCAACGAGTGCAAGCCCATCAG

Function


symbol description
prdm6 Human ortholog(s) of this gene implicated in patent ductus arteriosus. Orthologous to human PRDM6 (PR/SET domain 6).

NR:

description
PREDICTED: putative histone-lysine N-methyltransferase PRDM6 isoform X1

GO: NA

KEGG:

id description
K20795 PRDM6; [histone H4]-lysine20 N-methyltransferase PRDM6

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007260803.3 True 3288 mRNA 0.48 8 25398983 25441210
XM_022670394.1 False 1847 mRNA 0.60 8 25398983 25439759

Neighbor


gene id symbol gene type direction distance location
snx2 snx2 coding upstream 52884 25323117 ~ 25346099 (+)
sncaip sncaip,LOC103399731 coding upstream 94868 25297056 ~ 25304115 (+)
znf438 NA coding upstream 683750 24641088 ~ 24715233 (+)
arhgap12 arhgap12 coding upstream 935818 24364844 ~ 24463165 (+)
kif5b kif5b,LOC108430866,LOC107753262 coding upstream 1042319 24331622 ~ 24356664 (+)
nudt12 nudt12 coding downstream 81765 25522975 ~ 25531959 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding downstream 161191 25602401 ~ 25612117 (+)
LOC103036292 LOC103036292 coding downstream 184036 25625246 ~ 25633257 (+)
LOC103021869 NA coding downstream 196249 25637459 ~ 25640853 (+)
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding downstream 201096 25642306 ~ 25651303 (+)
LOC111192642 NA non-coding upstream 20742 25358002 ~ 25378241 (+)
G54310 NA non-coding upstream 172885 25225117 ~ 25226098 (+)
G54306 NA non-coding upstream 261989 25136435 ~ 25136994 (+)
G54303 NA non-coding upstream 300459 25098267 ~ 25098524 (+)
G54281 NA non-coding upstream 445152 24950612 ~ 24953831 (+)
G54376 cep120,zgc:163014,LOC107712640 non-coding downstream 26844 25468054 ~ 25471996 (+)
LOC111192644 NA non-coding downstream 111332 25552542 ~ 25561370 (+)
trnaw-cca_1 NA non-coding downstream 123451 25564661 ~ 25564732 (+)
trnaw-cca_2 NA non-coding downstream 124032 25565242 ~ 25565313 (+)
trnaw-cca_3 NA non-coding downstream 125685 25566895 ~ 25566966 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 290112 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1108218 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3477389 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3651903 21673574 ~ 21747080 (+)
fbxo11 fbxo11,fbxo11b,LOC108430631,LOC105896971,LOC107728720,LOC107582786,LOC107550041 other upstream 4573309 20794025 ~ 20825674 (+)
srp19 srp19 other downstream 104782 25545992 ~ 25549494 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 1095842 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1521682 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1579034 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1591625 27032835 ~ 27034938 (+)

Expression



Co-expression Network