catsper3


Basic Information

Item Value
gene id catsper3
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9353073 ~ 9354864 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260806.3
GCTACTAACGCGATGCCACGTGACCGAGAAACTCGGAAAAACTCACggctcctcctgttttttaattcaggAGTAGAagtgtgtaatattttgttacagacatccccctgaTAAACTAATTTCATCCGGAAAGGGCTTTTAATTTAGGCTTTACTGAGCAGAACAAGACCTCAAGCCTTAATTAGCCCTAATTTGAATTAGTTACCAAACTAAATccatttttattaatacataactaaataaatgaacaaacaaataaataaagctgtatGTGCCGTCAGTGCGACAGGCTACATTGATTATTATGGGGCTTTTCGAACACAAACAGGGCTGAGTAGAGACGGTGTTCTAGAACGTCACTGAATAGAACGCTGCGGGTGATGACGTCATCGTGGCTATAACAGGCCTGTGTAGAGGCTGAATCAGCACAGACATGTCAGCTCCACCTTCGACATGAATGTGATCCCACGCTACAGCGTGAGTAAAGTCGCCCACTTTCTGAAGACCCTGGTGGTCCTGGGGATTCTTCTGGACGCTGTGGTAATGGGTGTGGAAACAGACCCCAGACTTAGGAGTTCCTTCTCCTCGTTGCTGGAGGGGCTGGATATCTTCTGCATGGTCCTCTTCTGCGTGGAATGCACAGCGAGGGTAATCGTGAAAGCGCACCGATTCAGTGCACAAAATATCTGCAACACTGTCCTGCTGTTGCTGTCAGTCATAGCCAGGGCAGATAGCTCATACTGGCTCTTCAGGATCTTCCGGGCCCTCCGAATCCTCAGGGTCGTCTTCTACATCCCTGGTCTTCAGTACCTGGTGCTCATTCTGCGTCAAGGTGTGAAGGCAGCTGCGTACGTCATTATCATGCTCTTTTTCATCTTGTTTGTTTTCGCCATCGCTGGAGTGGAGTATTTCAGACACATAGACCCCGAAAACTGGGGGAACCTGCGTGCAGCATTGATCTCCACCTTGAGCGTTTTCACAATATCAGGCTGGGTGGATCATAACACCAGGCTGACTGGGTTTGGATCTGTCCACCACCAAGCCTTCTTCTTCATAGCCATCATAATAGGCAACTTCATATTCCTCAACATGTTCCTGGGTTTGGTCATGGAAGCATCCAAACACATGAAAATCGAGAAGAAGGAAGAGGCAAAACGCAAGAGAAAGATAAAAGAGCAGGAGgaagaagaactgcagcttcagaCGTCGGCGAAGTATTTTCACCAGCTGAGACTGAAGTATGAACAGTGTGAGGATGAATTCATAGAACCCACGGAGCTCTGCACTACTCTGACATGGATAGATTTACATGAGACCAGCGTAAAGAGGCAGAAAGAGGAAATGAAGAAGCTGAAGCAGCTCTCTGATCAAACTCTTCGTATCCAGCAAGAGCTGCTGGAGATGGAACTGCAGGAGAAGAGACATTTGAAGCGCTTCCGTGAAGTACGAGCTGTAGGCGCTGTAGGCTTTACAGCTATGAAATTtcttaaaagaaaacaacataATTAGACATGAGACAGCAGTGCAATGACCTGCAACCGCATTTCAACCACCTCTGAAAATTTAGatcatatagtgtatagtgaCTCTTTTGTATTGATTTGTAAgttgtctgaccagaggaggatgggtcccccctgatgagtcttggttcctcccaaggtttcttcctcctccagctctgagggagtttttccttgccactgtcaCTCACAGGgggttttaaaaagtatttttttactacTATTCTTACTATCATTAATgatcataataaaaaacatactactaatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260806.3 True 1792 mRNA 0.45 1 9353073 9354864

Neighbor

gene id symbol gene type direction distance location
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding upstream 1395 9345638 ~ 9351678 (+)
cdo1 cdo1,LOC102791980 coding upstream 17731 9326700 ~ 9335342 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding upstream 149944 9085038 ~ 9203129 (+)
hsd17b4 hsd17b4 coding upstream 357321 8976218 ~ 8995752 (+)
LOC103034488 LOC108437599 coding upstream 1083739 8264164 ~ 8269334 (+)
fem1c fem1c,LOC106580179,LOC107728259 coding downstream 2903 9357767 ~ 9364491 (+)
ccdc112 ccdc112 coding downstream 24262 9379126 ~ 9385691 (+)
pggt1b pggt1b coding downstream 31249 9386113 ~ 9405334 (+)
trim36 trim36 coding downstream 56667 9411531 ~ 9441528 (+)
ccser1 ccser1 coding downstream 92300 9447164 ~ 9612410 (+)
G50841 ap3s1 non-coding upstream 28910 9309260 ~ 9324163 (+)
G50822 NA non-coding upstream 98947 9253173 ~ 9254126 (+)
G50818 NA non-coding upstream 148856 9204016 ~ 9204217 (+)
LOC107197475 NA non-coding upstream 346427 9004992 ~ 9006646 (+)
G50770 NA non-coding upstream 406701 8945273 ~ 8946372 (+)
G50886 NA non-coding downstream 259664 9614528 ~ 9622057 (+)
G50887 NA non-coding downstream 259739 9614603 ~ 9617381 (+)
G50901 NA non-coding downstream 366481 9721345 ~ 9733234 (+)
G50907 NA non-coding downstream 445107 9799971 ~ 9803653 (+)
G50961 NA non-coding downstream 559289 9914153 ~ 9915227 (+)
G50583 LOC108437602,LOC103398889 other upstream 1008559 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 1074317 8270248 ~ 8278756 (+)
G50568 NA other upstream 1131911 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1469015 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 2368812 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 288510 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 768856 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1333021 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2477817 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 2729216 12084080 ~ 12129300 (+)

Expression


Co-expression Network