nr6a1 (nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838)


Basic Information

Item Value
gene id nr6a1
gene name nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34346593 ~ 34377925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015600798.2
AGGATCAGAGGCAGCCAGAgctggagaggagaggagaggggagGAGAGCGCAGGGGAGAGAAAGCTGGACTGAGAagaggcagggagagagagacatgagGCCTAAGCCCTGCTGCTCCAGGAGGATACATGTATGAATGAATGGCAGTGGGATCGGAAGAGACATGAGATGGATTCATGGGAAGatgACCAGGCTGAGCAGcgctcctgtctcatttgtggAGACCGCGCCACAGGACTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGCTTCTTCAAGCGCAGCATCTGTAATAAACGCGTGTACCGCTGCAGCCGCGACAAGAACTGCGAGATGTCCCGCAAGCAGCGCAACCGCTGCCAGTACTGCAGGCTGCTCAAGTGCCTACAGATGGGCATGAACAGAAAAGcaATCAGGGAGGATGGCATGCCAGGAGGAAGGAACAAAAGCATCGGACCTGttcagATTTCCGATGAGGAGATCGAGCGAATAATGTCTGGGCAGGAGTTTAAGGATGAGGCCAACATGCCGGAGCACACCTGGGGAAACAATGGCGACAGCGATCACAGTTCCCCTGGCAACGGCGTCTCCGATGGCAACCAGCCCTCTCCTGCGTCTACGCTATCCTCAAAtcgctcagtggagctgaatgGCTACACAGCAGCTTTGAGAGAGCAGTACATCGGCAGCGCAGTGGCCCAACACTACCAGTTCCTTCCACACCTGTTTGGATACACAGCACAGCCCCGCAGCCTGTACCCTCAGAGTCATACCCTCATCAGCCAGCTGGTGGCAGCAGAGGAACTGGCCCCACTGGGCACACCCATGCTCATAGAGGACGGgTATCGGGTGACCCAGGTGGAGCTCTTTGCTCTCCTCTGTCGTCTGGCTGATGAACTGCTCTTCAGGCAGATCTCCTGGATCAAGAAGCTGCCGTTCTTCTGCGAGCTCTCCATCGAGGACTACACGCGTCTGCTGAGCGCCACCTGGCAGGAGCTCATCCTTCTGGCCTGCCTGACCGTCTACAGTGCCCAGATCCTGGGTGACCTGGCCAACGTCACTGATAAATACACACCGTCCGATGATGAGCTGCAGGGgtTCAGTGAGGATGGTATGGAGGTGATGGAGAAGCTGATCTATCTGTTCCGCAAGTTCCACCAGTTGAAGGTCAGCAATGAGGAGTATGCCTGCATGAAGGCCATCAACTTCCTGAACCAAGATATCCGAGGTTTGACGAATGTGTCCCAGTTGGAGCAGCTGAACAAGCGGTACTGGTATGTGTGCCAGGACTACACTGAGTACAAATACCCTCACCAGCCCAAACGCTTCCCCGAGATCATGATGTGTCTCCCAGAGATTCGCTGCATCGCAGGGAAGTTGGTCAACGTCCCTTTAGAGCAGCTCCCCCTGCTGTTCAAGGCAGTCCTGCACTCCTGTAAGACCAGCCTGAACAATTACAGGACAAGCTCCTCCCCCTGTGTGACGAAGGGTACCGCCCCTGCCAACTAAGCCCGCCCCCCTCTGACCTAAGAAGCGACCCTTCTCACCTACAATTGCACGGGGGGCggggtgctggaggtgttgctATTGGGGGCGGGACTTCTGGTACCCCTGCCCCCTCATTGAATGTGACTAGCAGCTATTTTAtacttcttttttcctctctatctctctctctatttattacCAGACAGAGCTGAATGTATACTAATCCACACTGTGCCCGTTCCAATCCTGTTTGTACGGGAAATGCACAAAATCCGCGGCAGAGTTTTCTGCTCGCTAGTCCGAGTGCAGGATGTGTTCGTGACGCCACTGCTAGGATTAGAGTTACAGttgttacagttttattttgttgttttgtttgttttctgatgGGGACGTAGACATGTgggatgaagtgtgtgtgtatagactACCTCAATGAGAccaatccctctctctccagaTGACGTAGGTGGGCTGATTTGTGTGTGCTGCACATAACACACCCTTGTACTGTAAAGCCTGCAGGAGAGAGACGGATGGTCAGTAGTCATCAAGACCCTTTGTCATCAGTAAGACGGGGGGTTAAGTACATCCCATAATCGTAGACTGGGGATGGAAGACTTTACTGGAGAGCTGCATACAGTTTATCTGTTAGCGTGTTTCTTTTgatgttgtgctttttttttttttttttacacagtgttaTGTAAAGGTGGTGGGGAGTAAGTGAACCGTTCCACAAGTGGTGGTAGAACAAATCCAGAACCATAGGCATACTACtaaggggaaagagagaaaggacagCAGCTTCTGTCACAGCAACACTGAACCTGAGCTCACAACAGCAACCATGCAACTGCTCACTATACAGAGACCTAGAATAGCTCATTCTGCTGAGATCTTCAACAGCTGATTCTGTAGCTGTCCTGAACTGATCATTATGAAGGATTTTAGAATATTTAGACAGCTCTAGAACAGCAGTTTGGGTGTTCTAGAACACTTGCAAATGTCGCATTTTAGAATAGCTAATGCTGAGGTCttaaatatagtatatttttacAAGTTCTGGAGGCTCTTATAGTGCAGAGCTCTAAAGCAGCACATTGTGCTGAGTTCTAACATAGCCTGTTACATAAACCTTATGTGTAAGTATGTTCTCAATGGCTTTTCCAGGCCTGGCTTTTATTACTAATGCTGACTTATCAACAGGGCATTCTGTTGGCAAGTAAAAAGTGGTGAAGATGTTCAGCAGTTGATTTGGTGGTGACGTGTTATGGTGCTGTGTGTGCCCCTCTCTCACAAGCTCCTCACCTTCAACTGGACTGATCTTTTTAAAACAGGGTAAATCTACCGATTTATAGACTTCTCTCAACATAGGTTGATCTCAGGTATCACAACAATGATGCtagttttgtagtttgtaggTTCTGGACATTGTAGGTCCTTTttagattgtgttttttttgtttttgttttttgtcttattaTTCAGGAAAGAGGGGAGTGTTGTTTTTTGAAGGGTGTTTATGAAATTAAATgatcaaatgcaaaaaaaaaaaaaaaaaaaaaaaattaccactaacccaataaaaaagaaagtaacGTGGCCATGACACATTTAGTCTGGCTTTAATGGGGGACTACCCCGGCCGGCCTTGGGAATGCATGAGGTATTTTGTTGCTGTTGTCGAGGCACCGTCGGTCACTCTCCCTCTCAAATCTCAGTTCAAACATTCCAAAAAATCATTAGATTTTGCGTCGAGTGatgtttacatatttttgcaccagacAATGACAAGCGGCGGGCCATGCCAAAGATGCGTGTTCGCTTGGTAATGCCCCCCACTCCCCGTCCCCCACCCCAAGGCCTCTCGAGTGCAGCTAAAATCAGAGCGGTAACACGTGGAGACAAGTTAGGATTTTGGCTTTTGGTGTTTGTAGCATCATAAGCGCAGGTGACAGGAGTATTCGGCCAGAAAATCTGATGTAGAGgtttttttccgtttttgcTTGAATGTAGAAAGCAGATCAGCTAAGACGCGTTTGGAGTCTGCAGCTTTTGCTTCGTTTTGTGTCTTTATTTTTGCGCTGGgctggagctacaaggctaatgtggctaacagTAATAGAAGCTTTTGCCAATGTCAGTTTTGTTGTTAATATTATAACACACTCACCTCAAACATAACAAATAGGACACAAATATGGgtaacacttttaaaaatgctgctactgtttttattctgttacTGAGTTTATTAGCTGGCTTAGCCTTGAGCTCCTTAAGCTCTTTCGTAAGAATAAATAGATGCAGCAAACAGCAAATGAATGTTCTTCACGTTTTGGCTGATGAGCTTTGAGGGGTTTAAGCATTTGAAGTAAAGGAAATATTGTATTGATTGGATTTTTTTGCCGAAGTGTTTcctagaatatatttttatttgtgctgATCAGAGTCTATTGATTGTACCATGTTTTGATGTACCAAGACCAAATGCTACCATTGTTTCCATCCACCACATCATGTGTCCTTAAGTGTGTTTAGGAGCTGCTTGAATTGCAGTTTCTGTCAACTCTTTTTCATCCCGTCTTAAGCGTTTTGCCTccatttgttgtttttgtcataCCTTATTCCATGTTTACTCTCATAACTATTGTTAatgttcctttatttttaattttttgtatttcgCTACGGAGTGAAGGCCTCTCTCACTGTTTGTCAGAGCTCGTTGTATTTTTGGCGTCTCTCACAAGCCACACTGGACCCGTCCTAAAACTGGGCTTCACTCATTCAGGTTGAGTTGTTGCGCTTGTTAGAGCTTGTAAGGCTCTCACTTGTGGCATGCTACTTCATCTGTAGcaagaaaacacaaaaccaaGATGTttctgatcaaaaacatttccAGTCATGGCCATTTATCCTAAGCCTGTTTTGCGTTTCAGTGTAGTTCCACTGCATTTTTTCACCTATTATACACTCCAACGTTTGCGTTCCTCTTTAAGAGAGAGTGTTTCTCTAAGCACTCCATAGGTCTAACCAGAGGGCTATTGTGTGGAAATGTCCAGGCATCCACAGTGGAGGTTTATCAGGACGTTCTCTGTGGAGATATTTTCCAAAGCTCAGggatttttttcataattttcttTTGTCAATCAGAGACGCTTCACAAAGACCCCAATCATGCTCGGCCGCGACCTTTCCTGACCTCTCGGTCTCCACCGATTAAAGATGGTGCTCTCGTAGACCGCGGCAGCAGAATGAAAAGGTGGACGAGGGCGTCCACGGTGGAAAGGCAGCTTTGAAACTTCACACAAACATATGGTCTCGCTACATTGAAATCAGTTCTTCCATTTGCAGATGCCACTTCTTCGAAAGCCTTCACCTTCAGCTTAAACACTTCTGAATGATATGTATGATTCACAGACTTCACTGAGCTTGAAGCTGTGTTATCTGACCTCAAAAATCTCTCTGATTAGAGGgtcttacacacatacacacacacacacacatatacataaataaatacacagtggCATGCACGGGTTTGGGCACGCCTGCTCAAAAGATCTGTTGCTGTGAATAGTTAAGAcatgatttatttcatttaaaaagttaaagaagGCATTCACTTTAtgtatactttattactttaagcAAGATTGCGTTTTGATTgcatcttttattgttttatattacaaaaaaaaaaggcgacGATGCATGAtccatccacccccatgctgAACAGTTTAACAGAGCTTTTGACCAGGTTTGCCCAAACCTTTGCAGTGCACTATGTACAGATATCCTCCCAAAActgcatttgtattttttgtactgttttttgtttttccttcttttgtgttttctacATTGAAACTACCTCTTTTTTTGTCACCATGTTGCGTGCTTTCATTACGAAAAAGTATTACTCTTTATTTATTGGTTTCATAGCGCCGGtcaccctcttttttttttgctcagtagCTTCAGTCAGGTGTTCGGCAGGTGCGCCGGTACACAGTGGCTGCCGCTGATCACCTGACATGGTTTCCATCCACTGAACATCATTAGCTGCTGCAGGCAATACTggcattttagacattttatggCTCCATTCTGTCCGTTCTGTGTAATCGAGGAAGATTGTATTTTTCTCAGTGCAATGTTTCTTTAAATGACCAGTATTATATTTGTTGttgtaaacacttttttttgtgtgtgtgaattatTTTCATTAAGAATGTAATTCTTGTCATGACTGACACTGTTTTGGCGATTGCTGTTTACAGacgtttgtttttctttgttgttgtttaccCACTAATCATTGTAATGCTGTGACACttttcagccaatcagttttctTTCGCTTAATTGTTACGGGTATGAACTGATTGGTCTTTCTGAGACTATCAAAAAAAAGTGCTGTCAGTTTTACACAGAGACTTAATAGCTTGTGGagtttattctctttttaaattCTCTTTGACTTGAAGGGAAACTCTAATGAGACACGATGGTGAATGTCGGGctttaaaccaaaccaaatggaGCCAGATGAGGAGATTCATTAACATAGCTGGTATCTCAGGGAACGGacgcactctttttttttttttttaattcacacacacacacacaccattactgataaaattattaagaGTGTTGGTTGCCCCAAACCGATCATActcatataaaaaaactaaaaggtcAACCAAAATCAAACCTGGCATGACCTTTCAGTTCATGATTTTACTCAGTTTGTGTATTATTTGTAGGAGTGCCGTCCGAAGTGCTTTTCCAAAGCTATGTTTCTGTCCTCTCTTTCGTCTGCTCTTCTTACTTTAACTACCTGTGGAAAAATAATGTGACCCATACGTGTTATGAAAGCATGTTTAGAATGTTTTAGAACTTGAAACCAAATAAATGTGAATCTTATGCAACTGTGAAA

Function

symbol description
nr6a1a Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and protein homodimerization activity. Predicted to be involved in cell migration; nervous system development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Is expressed in cranial ganglion; myotome; neural plate; and telencephalon. Orthologous to human NR6A1 (nuclear receptor subfamily 6 group A member 1).
nr6a1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in gamete generation and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of chromatin and transcription regulator complex.

NR:

description
nuclear receptor subfamily 6 group A member 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016477 cell migration biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0022008 neurogenesis biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08561 NR6A1, GCNF; germ cell nuclear factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015600798.2 True 6453 mRNA 0.44 9 34346593 34377925

Neighbor

gene id symbol gene type direction distance location
LOC103038175 dusp2,LOC108440670 coding upstream 721841 33619314 ~ 33624752 (+)
LOC103039216 LOC108440668 coding upstream 826090 33511511 ~ 33520503 (+)
gck gck,LOC107550933 coding upstream 837219 33503615 ~ 33509374 (+)
LOC103024594 NA coding upstream 967980 33376019 ~ 33378613 (+)
LOC103026160 NA coding upstream 986450 33328786 ~ 33360143 (+)
LOC103026546 LOC108266031,LOC107563852 coding downstream 31423 34409348 ~ 34431835 (+)
LOC103024866 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding downstream 152375 34530300 ~ 34533334 (+)
LOC103022994 LOC108426650 coding downstream 261891 34639816 ~ 34665998 (+)
LOC103022237 ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720 coding downstream 470154 34848079 ~ 34870296 (+)
dbnl dbnl coding downstream 501895 34879820 ~ 34923018 (+)
G56305 NA non-coding upstream 560932 33785383 ~ 33785661 (+)
G56289 NA non-coding upstream 589901 33750902 ~ 33756692 (+)
G56283 NA non-coding upstream 619454 33726918 ~ 33727139 (+)
G56278 NA non-coding upstream 704171 33642213 ~ 33642422 (+)
G56235 NA non-coding upstream 737336 33608695 ~ 33609257 (+)
G56346 NA non-coding downstream 85549 34463474 ~ 34502982 (+)
LOC111192672 NA non-coding downstream 87395 34465320 ~ 34477898 (+)
LOC111192673 NA non-coding downstream 99965 34477890 ~ 34499623 (+)
G56364 NA non-coding downstream 167762 34545687 ~ 34545937 (+)
G56367 NA non-coding downstream 206247 34584172 ~ 34586827 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 706516 33635152 ~ 33640077 (+)
izumo1 NA other upstream 750775 33564828 ~ 33595818 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other upstream 939943 33404574 ~ 33406650 (+)
G56160 NA other upstream 980581 33358214 ~ 33366012 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 2129182 32183077 ~ 32217411 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 125189 34503114 ~ 34511684 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other downstream 335293 34713218 ~ 34751563 (+)
LOC103047498 NA other downstream 583875 34961800 ~ 34989285 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 848560 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 898154 35276079 ~ 35284271 (+)

Expression


Co-expression Network