LOC103031418 (tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520)


Basic Information

Item Value
gene id LOC103031418
gene name tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2510144 ~ 2521419 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015600865.2
AGCCTCATATTGCTGTGTTGGCGGAGACACGTTACACGTCCACAGTCAACGGAGCCCCGCGCTTTTAGCTCAACTTCGacatttcttctcttttttaaaagcttttcaacttaaactaaagacaaaatgAGAGAGTGCATCTCAATCCATGTGGGCCAGGCTGGCATTCAGACTGGCAATGCATGCTGGGAGCTGTTCTGTCTGGAGCACGGCGTGGGGCCTGACGGCGTGATGCAGGACGTGGCCGCTCTGTCCAACTCCCGTCAGGACCCCTTCAACACCTTCTTCAACACGGGCAGCTCCGGCCGCCACGTGCCCCGGGCCGTGATGGTGGACCTGGAGCCCACGGTGGTGGaTGAGGTGAGGAGCGGCATATACAGGCAGCTCTTCCACCCAGAGCAGCTCATCTCTGGGAAGGAGGATGCAGCCAATAACTACGCCCGCGGCCATTACACCGTTGGCAAGGAAATCATTGATGTGGTGCTGGAGCGCGTCCGCAAGCTCACTGACCAATGCACGGGTCTCCAAGGCTTCCTGATCTTCCACAGTTTTGGTGGAGGCACGGGCTCAGGCTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTGGAGTTCGCCATCTACCCCGCGCCACAAGTTTCCACGGCCGTGGTGGAGCCGTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGCGCCTTCATGGTCGACAACGAGGCCATCTACGACATCTGCCGCAGAAACCTCGACATCGAGCGCCCCAGCTACACCAACCTCAACCGTCTGATCGGCCAGATCGTCTCCTCCATCACCGCCTCTCTGCGCTTCGACGGAGCTCTGAACGTCGACCTCACCGAGTTCCAGACCAACCTGGTGCCGTATCCCAGAATCCACTTCCCCCTGGTCACCTACTCGCCCATCATCTCCACAGAGAAGGCCTACCACGAGCAGCTGTCGGTCGCTGAGATCACCAGTGCCTGCTTTGAGCCGTCCAATCAGATGGTGAAGTGCGATCCTCGCCACGGAAAGTACATGGCCTGCTGCATGCTCTACCGTGGTGACGTGGTACCCAAAGATGTGAATGCTGCCATTGCAAACATCAAGACCAAACGCTCCATCCAGTTCGTGGACTGGTGTCCCACAGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACGGTGGTTCCTGGTGGAGACCTGGCCAAGGTGCAGAGAGCCGTGTGCATGCTGAGCAACACCACGGCCATCGCCGAGGCCTGGGCTCGCCTGGACCACAAGTTCGACCTGATGTACGCCAAGCGGGCCTTCGTGCACTGGTACGTGGGCGAGGGCATGGAGGAGGGGGAGTTCTCTGAGGCCAGAGAGGATCTGGCGGCCCTGGAAAAAGATTACGAAGAGGTCGGAACCGACACGGTTGAAGACgaagaggagggagaggagTACTGATGATCTTCTTCAGGAGGTCGGCGTTCACAGTGCCTCTCCAGTGCCAAGCTGCCACCCACATCTTCACTTCCTCTCATCTTCTCCCGAAAATAGGGAGCAATGGTCTCATGTCTCTCCTTTCATacctttcttctttttctttgtacGTTTCTCTTATCCTGTCCTCAGACGGTTCTGCTCTTCATCCGTGTACGTGTTCTGTTTGTGGTTAAACTGTGTGCTCGAGTTCTTGTCGAGTATCCAAATTAATTTTGGGTTTATTACAGTTAAATTCTTTACTGTAACTCTGCTGACTGCCTCAATGGATCTGTTGATGCAACAGATCGTGCACTATTCCTATTCTGAATAAATTTCAtttaaagaagagaaga
>XM_015600866.2
AGCCTCATATTGCTGTGTTGGCGGAGACACGTTACACGTCCACAGTCAACGGAGCCCCGCGCTTTTAGCTCAACTTCGacatttcttctcttttttaaaagcttttcaacttaaactaaagacaaaatgCGTGAGTGCATCTCTATCCACGTGGGGCAGGCTGGTGTGCAGATTGGcaatgcatgctgggagttgtaCTGCCTGGAGCATGGTATCCAGCCCGACGGCACTATGCCGAGCGACAAGACGATTGGTGGTGGGGACGACTCATTTAACACGTTCTTCAGCGAGACGGGCTCGGGGAAGCATGTGCCGCGAGCCGTGTTCGTGGATCTGGAGCCTTCGGTGATCGaTGAGGTGAGGAGCGGCATATACAGGCAGCTCTTCCACCCAGAGCAGCTCATCTCTGGGAAGGAGGATGCAGCCAATAACTACGCCCGCGGCCATTACACCGTTGGCAAGGAAATCATTGATGTGGTGCTGGAGCGCGTCCGCAAGCTCACTGACCAATGCACGGGTCTCCAAGGCTTCCTGATCTTCCACAGTTTTGGTGGAGGCACGGGCTCAGGCTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTGGAGTTCGCCATCTACCCCGCGCCACAAGTTTCCACGGCCGTGGTGGAGCCGTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGCGCCTTCATGGTCGACAACGAGGCCATCTACGACATCTGCCGCAGAAACCTCGACATCGAGCGCCCCAGCTACACCAACCTCAACCGTCTGATCGGCCAGATCGTCTCCTCCATCACCGCCTCTCTGCGCTTCGACGGAGCTCTGAACGTCGACCTCACCGAGTTCCAGACCAACCTGGTGCCGTATCCCAGAATCCACTTCCCCCTGGTCACCTACTCGCCCATCATCTCCACAGAGAAGGCCTACCACGAGCAGCTGTCGGTCGCTGAGATCACCAGTGCCTGCTTTGAGCCGTCCAATCAGATGGTGAAGTGCGATCCTCGCCACGGAAAGTACATGGCCTGCTGCATGCTCTACCGTGGTGACGTGGTACCCAAAGATGTGAATGCTGCCATTGCAAACATCAAGACCAAACGCTCCATCCAGTTCGTGGACTGGTGTCCCACAGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACGGTGGTTCCTGGTGGAGACCTGGCCAAGGTGCAGAGAGCCGTGTGCATGCTGAGCAACACCACGGCCATCGCCGAGGCCTGGGCTCGCCTGGACCACAAGTTCGACCTGATGTACGCCAAGCGGGCCTTCGTGCACTGGTACGTGGGCGAGGGCATGGAGGAGGGGGAGTTCTCTGAGGCCAGAGAGGATCTGGCGGCCCTGGAAAAAGATTACGAAGAGGTCGGAACCGACACGGTTGAAGACgaagaggagggagaggagTACTGATGATCTTCTTCAGGAGGTCGGCGTTCACAGTGCCTCTCCAGTGCCAAGCTGCCACCCACATCTTCACTTCCTCTCATCTTCTCCCGAAAATAGGGAGCAATGGTCTCATGTCTCTCCTTTCATacctttcttctttttctttgtacGTTTCTCTTATCCTGTCCTCAGACGGTTCTGCTCTTCATCCGTGTACGTGTTCTGTTTGTGGTTAAACTGTGTGCTCGAGTTCTTGTCGAGTATCCAAATTAATTTTGGGTTTATTACAGTTAAATTCTTTACTGTAACTCTGCTGACTGCCTCAATGGATCTGTTGATGCAACAGATCGTGCACTATTCCTATTCTGAATAAATTTCAtttaaagaagagaaga

Function

NR:

description
PREDICTED: tubulin alpha-8 chain-like isoform X1

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015600865.2 True 1850 mRNA 0.55 5 2510144 2521419
XM_015600866.2 False 1847 mRNA 0.54 5 2510144 2521419

Neighbor

gene id symbol gene type direction distance location
klhl12 klhl12 coding upstream 3948 2478591 ~ 2506196 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding upstream 35571 2465593 ~ 2474573 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding upstream 147920 2359922 ~ 2362224 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding upstream 508974 1999574 ~ 2001170 (+)
LOC103027674 LOC108425035 coding upstream 723782 1772919 ~ 1786362 (+)
LOC103026437 LOC108425081 coding downstream 6050 2527469 ~ 2583319 (+)
LOC103035089 NA coding downstream 63126 2584545 ~ 2597636 (+)
LOC103037045 NA coding downstream 77823 2599242 ~ 2602614 (+)
LOC103025499 NA coding downstream 81914 2603333 ~ 2616672 (+)
LOC107196890 osbpl9 coding downstream 95422 2616841 ~ 2661456 (+)
G49116 NA non-coding upstream 30773 2432799 ~ 2479371 (+)
G49117 NA non-coding upstream 80501 2428120 ~ 2429643 (+)
G49122 NA non-coding upstream 82233 2425130 ~ 2427911 (+)
G49121 NA non-coding upstream 105416 2404515 ~ 2404728 (+)
G49120 NA non-coding upstream 107167 2402683 ~ 2402977 (+)
G49146 NA non-coding downstream 135777 2657196 ~ 3150588 (+)
G49150 NA non-coding downstream 149398 2670817 ~ 2672813 (+)
G49151 NA non-coding downstream 159779 2681198 ~ 2681503 (+)
G49154 NA non-coding downstream 185604 2707023 ~ 2709154 (+)
LOC103026017 NA non-coding downstream 187285 2708704 ~ 2724228 (+)
G48714 NA other upstream 1698879 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 461427 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1678520 4199939 ~ 4239873 (+)
G49475 NA other downstream 1723109 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3097740 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3255633 5777052 ~ 5789265 (+)

Expression


Co-expression Network