pym1 (pym1,LOC102777374)


Basic Information

Item Value
gene id pym1
gene name pym1,LOC102777374
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1760812 ~ 1764075 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603140.2
cctCCCTTTCCCGCCACGTGACCGGAAACCCCACATGTGGAAGATGGCGACTCCGTATGTAACGGATGAGTCTGgAAAGTACATTGCTGCTACACAGCGGCCGGACGGGACCTGGAGGAAACCTCGGCGGGTGAAGGAGGGATATGTGCCGCAGGAAGAAGTGCCGGTATACGAGAACAAATACGTGAAATTCTTCAAGAGCAAGCCGGACCTCCCCCCTGGCATGAATCCAGAGGATGCGGCGGCAGCTCGGCAGCAGCAGGCGCCCGGTGGCGGTGGTGGCGGGGAGAAGGAGAGCGAGACGGCCGGTCTGTCTAAAGCGGCCAAACGCAACATGAAGCGCAAGGAGAAGCGCaagcagcagcagagccagGGTCAGCAGGAGGAGTCTGAGGAGGTGGAGGCGCTGGGGAAAGATCTTGAGAAGGTGACGGTAGCTTCGGCGGAGAGGAACAGCACTGCTGCCCCTGCCCCTGCCTCAACACCTGCCTCAACACCTGCCTCAGCTCCTGCCAGAGCACCTGCCAGAGCACCTGCCTCAGCTCCTGCCACCTCCCCAGCCACAGCCCCTGCTGCTGCCGCCGATCTCTCCCCCGCAGCCGCCGCCGAAAAAGCCAAGAAGATCAAGAACCTGCGCAAGAAGCTGCGGCAGgtggaggagctgcagcagaAACTGGACTCGGGAGAGCTGCAGAACCCTTCCAAGGATCAGTTGGACAAACTGGGCCGGGCCCAGGCTTTACGAGCCGAGATTAAGCAGCTGGAGGCGGAACTGTGAAGAAAACTGCCTCGGAAAAAAAGATTCGAGATTAGAGGCGAGGAAGGAGAGGGTTGggtttttcagttttcatttttttcattttggtgtcgttttttttttttgttattgttgttttctTCGGAGGCTGTAGCATCCATAGACATCCTATGCATAGACGCCGCATACTCTGCCTCCTGGAGTGTCAGCGAGGCGgccatattggaggaggcaaCCCTGCGACCCCAGTGCATTAATTaacactgaggaaggtgtttaatacacctgtAATAATCACTCAACCAGTTTATACCTGATTTtcacacagtttgatttgttacagaCAGCAGAGATATAAGTAATGATTCAGGACgctgttacacattacaaatatgtgctTTCCTGCtaaaattctttgttttttgctctttaacaaagacag

Function

symbol description
pym1 Predicted to enable RNA binding activity and ribosome binding activity. Predicted to be involved in exon-exon junction complex disassembly; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and positive regulation of translation. Predicted to act upstream of or within regulation of translation. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of exon-exon junction complex. Predicted to be active in cytoplasm. Orthologous to human PYM1 (PYM homolog 1, exon junction complex associated factor).

NR:

description
PREDICTED: partner of Y14 and mago A-like

GO: NA

KEGG:

id description
K14294 WIBG, PYM; partner of Y14 and mago

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603140.2 True 1199 mRNA 0.54 3 1760812 1764075

Neighbor

gene id symbol gene type direction distance location
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 299114 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1283516 354036 ~ 477296 (+)
LOC111192744 NA coding upstream 1491290 263730 ~ 269522 (+)
LOC111192720 LOC108425021 coding upstream 1629174 122069 ~ 131638 (+)
LOC103027674 LOC108425035 coding downstream 8844 1772919 ~ 1786362 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 235499 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 595847 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 701518 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 714516 2478591 ~ 2506196 (+)
G48822 NA non-coding upstream 33530 1639979 ~ 1727282 (+)
G48815 NA non-coding upstream 149580 1606475 ~ 1611232 (+)
G48772 NA non-coding upstream 254526 1491321 ~ 1506286 (+)
G48771 NA non-coding upstream 289470 1046814 ~ 1471342 (+)
G48805 NA non-coding upstream 340610 1419732 ~ 1420202 (+)
G48857 NA non-coding downstream 39682 1803757 ~ 1904244 (+)
G48868 NA non-coding downstream 71243 1835318 ~ 1851766 (+)
G48887 NA non-coding downstream 125832 1889907 ~ 1934861 (+)
G48891 NA non-coding downstream 129843 1893918 ~ 1895755 (+)
G48897 NA non-coding downstream 152520 1916595 ~ 1952370 (+)
G48714 NA other upstream 949547 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 1218771 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 2435864 4199939 ~ 4239873 (+)
G49475 NA other downstream 2480453 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3855084 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 4012977 5777052 ~ 5789265 (+)

Expression


Co-expression Network