LOC103027824


Basic Information

Item Value
gene id LOC103027824
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31844074 ~ 31849517 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604360.2
AGCACCTTAGATATGGCAGAAGCTTTACCAGCTCAGGACTCTGCATTCAGCTGTTCGATTTGTGTGGATCTCCTGAAGGACCCAGTTACAATTCCCTGTGGACACAGTTTCTGTCTTATCTGTATTAAAGACTGCTGGGATCAGGATGATCAGAAGGGAATCTTCAGGTGCCCCCAGTGCAGACACACCTTCAATCAAAGGCCTGTGCTCTACAAGAACAGCCTGATTGCTGAAAtggtaaagaaacaaaaaaagccaAGTCCTCAACCCACTGCTTCTCCTGAATctggagctgtggagtgtgaCATCTGCACCGGGAAGAAACAGAAAGCTGTCAAGTCCTGTCTGGAATGCCTTGTATCTTACTGTGAAGCTCATATTCAGTCTCACTGTAAATCCTCTCCGTCAAAGAAGCACCAACTGGTTAAAGCCTCGGCCAAAATACAGAAGACCTGCTCTCGTCATGATAAGCTGCTGGAGCTGTTTTGTCACACAGATCagaaatttgtttgttttatgtgcACAATGGATGAACACAGTGGTCACGAAACTGTCTCAACTGCAGTGGAAAGATCTCAGATGCAGAAGCGGTTAGTAAAGACCCAGACAAAACTCCAGCAGGGAATCCTGCAGAGACAGAAGAAGCTACAAGAGCTGAAAGAGGCTATGGAGAACCTCAGGCATTCTGCGCAGGTAGCAGTGGAAGACAGTGAGAAGATCTTTACTGACCTGATTCAGTCCATTAAGAAAAAACGCTCTGAGGTAAAAAAGCTCATCAGAGCTCAGGAAAAGGCTGAACTAAGTCATACAGAAGAACTGCTGAAGAAACTGGAGCAGGAGATTGCTGATCTGAGTAGAAGAGACACTGCTCTGGAGCGGCTTTCACACACAGAGGATCACATCCACTTTCTACAGAGGTTCCAGTCTTTCTCTGGTCAAAAGGAGACTGCAGACTTAACACCCTTTAATGTCACTCCACACTTCTCAACAGAAGAACTGAGGAAAGCTGTGTTTGGAGTAAAAGAACAAGTGGATGATGTCTGCAGTGTTACAGTGATCAAATCAAAAGGAGttTACACTTTGCAGCCTTGTCAGCCAGCGACCAGGAAGGAATACCAGAAATATTACTGTCACCTCACAATGGATTTGAGCATGGCACACAAAGAACTCTGCTTGTCTGATGGAAACAGAAAAGCGATGTGGAGTCGGAAGCtgtattttgatatttcagATATCCTTGACGAGTGTAGACAGGTGCTGTGTGAACAAAGTGTGTCTGGACGCAGTTACTGGGAGGTAGTGTGGAACGGTAGGGTTCATATAGCCATCTCATATAAAGACCCCAGCAGGCCTGAAAGGCAGTGTGAATTTGGGAATAACGATCAGTCCTGGAGTTTAATCTGCTCTGACTCCGGCTTCTCTTTCAGACACGACAATAAAGAGACTAAACTCCCTGTAGTTTCCGGTTCCTCCAGaataggagtgtatgtggatcATTGGGCAGGAATTCTGTCCTTCTTCAGCGTGTCTGACACAATGACGCCCTTCCTCAGAGTCAAGGCCACATTCACTCAGCCCCTATACCCCGGGTTTGGGGTTTGGCCAAGGACCAGTTTTGTTCAGATTTGTgaagtgtgtttatttgtttagatGTATGACCTAAAGTAATTGTGAATGTTTGGtgcaaaatcaaattaaaaagattGTTCAGTGACAGCCCCAGTCAACAAGTCAATTCATCTTCAGTATTGAAAGTTTGATTCTATAATCAGAAAGTAGTGCTAAATAAATGGCCTAAAAACACATCCAAACCTTAATATGTTTGGTCATATCACTGCTATGTAGTGCATGGTAATGACACCTCCACTGAGTAACCATTTTAACCTCAAAAGAATGTAGTATCATTCCATGCTCTGGGATCCACATGAAAAATGGACTAGCATGTGAAATTAAGACTTTATGTAGCTGATAATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604360.2 True 1976 mRNA 0.44 6 31844074 31849517

Neighbor

gene id symbol gene type direction distance location
LOC103045458 olfml2a,olm2a,LOC105894692,LOC104951789 coding downstream 18571 31793087 ~ 31825503 (-)
LOC103043728 NA coding downstream 84993 31743872 ~ 31759081 (-)
LOC103041868 NA coding downstream 233120 31598462 ~ 31610954 (-)
LOC111192668 NA coding downstream 264286 31577353 ~ 31579788 (-)
tmem132c si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC108442515 coding downstream 411423 30967612 ~ 31432651 (-)
tti2 NA coding upstream 24099 31873616 ~ 31879260 (-)
slc18a1 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC106587027 coding upstream 34833 31884350 ~ 31898822 (-)
LOC103047383 ppiaa,LOC108411171,LOC107691558,LOC107756846,LOC108265559 coding upstream 62522 31912039 ~ 31916431 (-)
LOC103029395 ogdha,LOC108411168,LOC107756845,LOC107691557,LOC108265558,LOC107566960 coding upstream 71304 31920821 ~ 31963870 (-)
adam9 adam9,LOC107591921,LOC107722987,LOC107702867,LOC107691559,LOC107566966 coding upstream 119008 31968525 ~ 32018419 (-)
G55788 NA non-coding downstream 113830 31728783 ~ 31730244 (-)
G55779 golga1,LOC107703180 non-coding downstream 131138 31710305 ~ 31712936 (-)
G55757 NA non-coding downstream 263005 31575369 ~ 31581069 (-)
LOC111192666 NA non-coding downstream 363608 31477576 ~ 31480466 (-)
LOC111192663 NA non-coding downstream 368437 31474911 ~ 31475637 (-)
G55874 NA non-coding upstream 17882 31867399 ~ 31869197 (-)
G55884 LOC108411167 non-coding upstream 59499 31909016 ~ 31910332 (-)
LOC111192671 NA non-coding upstream 270088 32119605 ~ 32122006 (-)
G55939 LOC108440819,LOC108265606 non-coding upstream 371627 32221144 ~ 32239724 (-)
G55938 NA non-coding upstream 391904 32241421 ~ 32242539 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 103853 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 153266 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 1909644 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 2003321 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 3243564 28554727 ~ 28600510 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 922510 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 1299557 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 3241213 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 3435905 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 3446824 35296341 ~ 35299750 (-)

Expression


Co-expression Network