LOC103028136


Basic Information

Item Value
gene id LOC103028136
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28790400 ~ 28794659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605307.2
CCCACCACTCCTCCCCATTCTGTCATTTTAAAGGCAGCTCTGCAGGAGGCTTTCTTCTTCTTACCCACAGCCATGTATCTCTCCTGGTTTCTGCTCTTTGCCACAGTGTCTGCGGTGCGTGGAGCTGTGGTGCCCTATGCCTTATGGCAGTTTGGTAACATGATCCAGTGCGCCCAGCCTGGTGTGAATCCTCTTATCTACAACAACTACGGCTGCTTCTGTGGGCTTGGAGGGTCCGGCTCACCCAAAGACCAGCTGGACCGGTGCTGTCAAGTGCATGACCAGTGCTATACAAATGCCAAGAAACTTCCAGAATGTACCTTTTTAGACCCATACGTCAAGGTCTATTCTCACTCCTGTTCCAACAAAAAGGCCTCCTGCTCAGGATCCAACGCTAAATGTGAGGCCGCAGTGTGTGAATGCGACCGGGTTGCTGCCCACTGCTTCGCCCAGTATAATCACGTTTACAACTCTGCCTACAAGAACCTCAGCCAAAGCCAGTGTAAATGAGAAGCTGACCCCAGATGTGGAGTGAAATCTGTAATTGATACGTTTTCTGTGTaatttacaagaaaaaaaatattgcttacAATAATAACCATGCTGACAAAAACAGA

Function

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605307.2 True 617 mRNA 0.48 4 28790400 28794659

Neighbor

gene id symbol gene type direction distance location
LOC103026907 NA coding upstream 3017 28775630 ~ 28787383 (+)
c6h12orf43 NA coding upstream 56979 28729414 ~ 28733421 (+)
unc119b unc119b,unc119.1,LOC107753165,LOC107712459,LOC107550938,LOC107687994 coding upstream 62393 28716975 ~ 28728007 (+)
mlec mlec,LOC107687973,LOC107554429,LOC107703166 coding upstream 76409 28703345 ~ 28713991 (+)
cabp1 cabp1,cabp1a,LOC108415942,LOC107712460,LOC107550936,LOC107687995 coding upstream 93425 28670690 ~ 28696975 (+)
LOC103025277 LOC108413761 coding downstream 91811 28886470 ~ 28890378 (+)
crybb2 crybb2,LOC108265494,LOC108410876,LOC108234953 coding downstream 948490 29743149 ~ 29747471 (+)
lsm1 lsm1,LOC107571959,LOC107548281 coding downstream 1169415 29964074 ~ 29966667 (+)
LOC103046047 LOC107756834,LOC107548280,LOC107691567,LOC107702864 coding downstream 1174091 29968750 ~ 30061365 (+)
star star,LOC107691570 coding downstream 1269681 30064340 ~ 30068306 (+)
G55211 LOC108412053 non-coding upstream 20302 28732314 ~ 28770098 (+)
G55214 LOC108412048 non-coding upstream 43909 28737597 ~ 28746491 (+)
G55205 NA non-coding upstream 74440 28715239 ~ 28715960 (+)
G55151 NA non-coding upstream 172024 28617866 ~ 28618376 (+)
LOC111192729 NA non-coding upstream 255280 28533419 ~ 28535120 (+)
G55229 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 non-coding downstream 194 28794853 ~ 28804271 (+)
G55232 NA non-coding downstream 11047 28805706 ~ 28807464 (+)
G55235 NA non-coding downstream 29532 28824191 ~ 28825643 (+)
G55236 NA non-coding downstream 33226 28827885 ~ 28829712 (+)
G55282 NA non-coding downstream 79081 28873740 ~ 28874091 (+)
G55218 NA other upstream 35583 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 133582 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 852011 27814215 ~ 27938389 (+)
G54841 NA other upstream 1077822 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 1121738 27663782 ~ 27668662 (+)
G55502 NA other downstream 1552357 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 1734203 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3126161 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 3180022 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 3264750 32059409 ~ 32150570 (+)

Expression


Co-expression Network