LOC103043198 (grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502)


Basic Information

Item Value
gene id LOC103043198
gene name grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11589324 ~ 11698963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670186.1
ACTCACTCGTTCACTCTCTCACCGCTTTTACcctcctccctccttctcttcctTCTCTTCCTCTGCGCGCGGAAAGGTGCCGGAGAGCTGAGCGCGCGCGGGCAGTTCAGAGCAGAGTATTGCATTCACCTGCGAGcccccagtctctctctctctctctctctctctctctctctctcgttctctctctctctcttactaaatcactatctctttctctttcactctccctCTTTTACGCCCTCACTCTCCAGCGCGGTGGACGGACGGGCATCCCGCGCGCCTCACTCTGCAGCCTGTAGAGCGGGCAGACGGACTGGGCAGCGCGCTGGATGCTGGACCGGAGGAGACGGACTTACGCAGCGGGGGTGCACGCGCGCGCGCACTGCTGAGCACAGCCGAGTTACTGGGCGTCCTGTGAGCTGGTCAGAATGGGAACTGGAGGTTCCTGTTCCTGTAGTGGATCAGAACTCTTGCTGTAAAGACTGACCACACCATGACACCCCCCCTCCCGCCGCCGTTCCcgcatcttcatcatcatcatcatcatcaaagtGCCGCTTCCTTCCCGCCGAGTCGGAGCAGCTGGCACCGTCCCACATGGCTGCTGTGGATGCTGTGGGCGTGGCTGAGTCCGGCCTGGGCTCACCAGCACTCGCACCCTCACTCCATCAAGATCCCGGGGGACATCACGCTGGGGGGCCTGTTCCCCGTCCACGCCAAGGGCCCCTCCGGCCTGCCCTGCGGAGAGATTAAGAAGGAGAAGGGCATCCACCGCATGGAGGCCATGCTGTACGCCCTGGACCAGATCAACAGCGACCCGGACCTGCTGCCCAACATCACTCTGGGCGCTCGCATCCTGGACACGTGCTCGCGGGATACGTACGCCCTGGAGCAGTCCCTCACCTTCGTCCAGGCCCTGATCCAGAAGGACACGTCCGACATCCGCTGCTCCAATGGCGAGCAGCCAATCATACGCAAGCCTGAGCGCGTGGTGGGCGTCATCGGGGCGTCGGCCAGCTCCGTGTCCATCATGGTGGCCAACGTCCTGCGGCTGTTCGAGATTCCTCAGATCAGCTACGCCTCCACAGCTCCAGAGCTCAGCGACAACAACCGCTACGACTTCTTCTCTCGTGTGGTTCCTCCAGACTCGTACCAGGCTCAGGCCATGGTGGACATCGTGAAGGCTCTGGGCTGGAACTACGTCTCCACACTGGCCTCTGAGGGCAACTATGGAGAGAGTGGAGTGGACGCCTTCGTCCAGATCTCCCGAGAGGCAGGAGGCCTGTGCATCGCCCAGTCCATAAAGATCCCCCGAGACCCCAAACCCGGAGAGTATGACAAGCTCATTAAGAGATTAATGGAGACCCCCAACGCTCGCGGGGTCATCATCTTCGCCAACGAGGACGACATCAAGCAGGTGCTGGAGGCGGCTAAAAGAGCTAACCTAACCGGCCACTTCAAGTTTGTGGGGTCGGACAGCTGGGGGGCCAAGAGCACTCCGATCCTGGACCATGAGGACGTGGCAGAGGGGGCGGTGACTATTCTCCCCAAAAGAGCATCTATTGAAGGATTTGATCAATACTTCATGTCCCGCTCTCTGGAGAACAACCGGCGGAATATCTGGTTTGCTGAGTTCTGGGAAGACGACTTCAGGTGCAAATTGACGCGTCCGGGCATCAAGCTCGACCCCGAGAAGAAGAAATGCACAGgtaATGAGCGGATAGGTAGAGATACTCCGTACGAGCAGGAGGGGAAGGTGCAGTTTGTGATCGACGCTGTGTACGCCATGGCTCACGCTTTGCACAACATGCACCAGGACCTGTGCCCGGGGGCGATAGGTGTCTGTGATAAAATGGACCCGGTGGAGGGGAGATTACTGCTCAGCTACATCCGCTCTGTCAACTTCAATGGCAGTGCTGGCACCGGTGTTCTTTTTAATGAGAACGGAGATGCTCCGGGTCGATATGACATCTTTCAGTACCAAATGACCAACACAAGCAACCCGGGGTACAGAGTCATCGGCCAGTGGACCAATAACCTCAGGCTTAATGTGGAGGAAATGCAGTGGTCTGAGGGTGACCGGCAGATCCCCGACTCCGTGTGCAGCTTCCCGTGCCGCCCAGGCGAGAGGAAGAAGATGGTGAAGGGCGTCCCGTGCTGCTGGCACTGTGAGCTGTGCGACGGATATCAGTACCAAGCGGACGAGTTTAACTGCGAGATGTGCCCGTTCGACATGAGGCCCACGCCCAACCGCACCGCCTGCAGGCCCACGCCCATCATCAAGCTGGAGTGGCACTCGCCCTGGGCCATCATCCCCCTCTTCCTCGCCATCCTGGGCATCGTGGCCACGCTGTCCGTCATAGTCACCTTCATCCGCTTCAACGACACGCCCATCGTGCGGGCGGCCGGCCGAGAGCTCAGCTACGTGCTGCTGGTCGGGATTTTCCTCATCTACTTCATCACCTTCCTCATGATTGCGGAGCCGGGCGCGGTGGTCTGCGCTTTCCGCAGGCTGCTGCTGGGGCTGGGCATGTGCATCACCTACTCCGCCATGCTCACCAAAACCAACCGCATCTACCGCATCTTCGAGCAGGGGAAGAAGTCTGTGACTCCGCCCAAGTTCATTAGTCCTACGTCTCAACTCGTCATCACCTTCATCCTCATCTCTATCCAGGTGGTGGGAGTGTTCATCTGGTTCGGGGTGGTGCCCCCCCACACCACCGTAGACTACGAGGAGCAGCGGCCCCCGAATCCAGAGCTGGCTCGCGGCGTCCTGAAGTGCGACATGTCCGACCTGTCGCTCATCTGCTGCCTGAGCTACAGCATCGTGCTGATGGTCACCTGCACCGTCTACGCCGTCAAGAGCAGAGGTGTTCCTGAGACCTTCAACGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGCATCGTCTGGCTGGCATTCGTGCCCATCTTCTTTGGCACGGCGCAGTCCACGGAGAAGATGTTCATCCAGACGACCACATTGACCGTGTCAATGAGCCTGAGCGCCTCCGTGTCTCTGGGCATGCTCTACATTCCCAAAGTGTACGTCATCATCTTCCACCCGGAGCAGAACGTGCAGAAGCGGAAGCGCAGCTTCAAGGCCGTGGTGCAGGCCGCCACCATGTCCACGCGCCTGTCTCAGAAATCCAACAGCGACAAGCAGAACGGCGAGACCAAGATAGAGCCAGACCGGACGCAGTAGCAGcAGGAGGCTCAGACCGGCACACTCAGCTGTGGTGGACTGAAGGACTGAAGCATCAAAGAGAAACTTCAGCAGATCTGCAGACGGATGAGTTTTTTGGTGGGAGGTCGAGCACATGGACGCGGCGGCCCTGCGAAAAACTGCAGAAGCAGCAGGTGCTGACCGTGACAAAACCAACCTTTTCTAAACAAAGCCCATTCTAGAACCTGTTCTCAAACTGCTGTATAAAAAACTGCTGCAGTGTGAGGAGGCGCTGTTTCACGTGGACGCGTGGAAGAACTCTCAGTGGTGATGGATGTTCACTACTGGTTCCTGCTTCACGATTCTGgaccttatttttttgttacggacaaaaaaaaaacgaaatggGAAGCGTGTGTGAGTCAGTACAGCGTCTGATTTAGCAGTTTCGTGGCATGTGGGATGTTGGtggtgtgtttgcgtgtgtttgtgttttacttTACAGGATGATCAGAGGAGTAGAACTGCTCTAGGACTGCTCTACAGGATACAGGAgttaaaccataaaaaaaatgaagtgaaCTAATCATCAGTTAGCCTCTAATAACTCATCTAGTCCATCAGTCCAGCATTGTGTCAGAATATAATATGAGGTTTCCGTTCAGACTGTAGGTTTATTTCAGATAAGATCTTTATTATGTAGGTTCTGACCTGTTATTAATGCTAGATAGATCATCTAACTAGTTCATTATAAgttctttaaaggagaactccagtgtaaaattgacttttgctgtagtaaaacatgataaagagtactaaccta

Function

symbol description
grm6a Predicted to enable group III metabotropic glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and retinal neural layer. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1B. Orthologous to human GRM6 (glutamate metabotropic receptor 6).

NR:

description
PREDICTED: metabotropic glutamate receptor 6-like

GO:

id name namespace
GO:0007196 adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001642 group III metabotropic glutamate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670186.1 True 4019 mRNA 0.56 13 11589324 11698963

Neighbor

gene id symbol gene type direction distance location
nkx3-1 nkx3-1 coding upstream 302109 11284887 ~ 11287215 (+)
nkx2-6 nkx2-6,LOC107081961,LOC102231304,LOC103470093,LOC105012089,LOC106591187 coding upstream 329862 11255718 ~ 11259462 (+)
stc1 stc1,LOC107665189,LOC107747716,LOC107553168,LOC107559448 coding upstream 368200 11204075 ~ 11221124 (+)
LOC103034408 NA coding upstream 513494 11061148 ~ 11075830 (+)
LOC103038909 LOC108426628 coding upstream 877240 10646784 ~ 10712084 (+)
npl npl coding downstream 212205 11911168 ~ 11921164 (+)
LOC103023153 sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649 coding downstream 230335 11929298 ~ 11935136 (+)
LOC103041950 LOC108439388 coding downstream 266627 11965590 ~ 12065127 (+)
LOC103041649 slc35a3,LOC108439387,LOC107717552,LOC107585865 coding downstream 374668 12073631 ~ 12092223 (+)
LOC103041348 foxe3,foxe1,LOC103041348,LOC103130754 coding downstream 419950 12118913 ~ 12121673 (+)
G51390 NA non-coding upstream 29991 11557941 ~ 11559333 (+)
G51376 NA non-coding upstream 97187 11491495 ~ 11492137 (+)
G51338 NA non-coding upstream 146412 11440564 ~ 11442912 (+)
G51312 NA non-coding upstream 161894 11337609 ~ 11427430 (+)
G51313 entpd4,LOC107710847,LOC107747713 non-coding upstream 239096 11346193 ~ 11350228 (+)
G51400 NA non-coding downstream 2389 11701352 ~ 11703334 (+)
G51401 NA non-coding downstream 14784 11713747 ~ 11715615 (+)
G51411 NA non-coding downstream 69897 11768860 ~ 11769374 (+)
G51425 NA non-coding downstream 126530 11825493 ~ 11829845 (+)
G51424 NA non-coding downstream 131936 11830899 ~ 11831710 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 832069 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 1458523 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 1806603 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 3244810 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 3310568 8270248 ~ 8278756 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 133718 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 385117 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 738441 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 1616776 13315739 ~ 13327325 (+)
G51745 NA other downstream 1657762 13356725 ~ 13368274 (+)

Expression


Co-expression Network