npl (npl)


Basic Information

Item Value
gene id npl
gene name npl
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 11911168 ~ 11921164 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670190.1
TCTCCTCTTTGGACACGACTACGCTTGTATCCTATTGGATGGAAAAGAACTACATATCGCTCAGAACTACATTCACCAGAGTGTTTGAGTCTTCATGTGACTGCCGTGTGTTTTCCCTGCTACCTGATGAGAACTCAGCAAACAAGTAGATGCTGCTGTTTTATTGCTGCAAGTCGTCGATTGAGTAGGACGGAGGCGACGGATCGCAGGCACAGCTAGCAGGGATGTCTCCAGGCACAGGGCAGCTCTCTGGGCTGGTCGCAGCTACCTTCACTCCACTCACTCCGCAAGGGGAGCTGAACCTGCCGGTGATTGGGCCGTATGTGGACTACCTGCTTGAGAAACAGGGCGTGCGGAGCGTGTTTGTGAATGGGACCACAGGTGAAGGCTGCTCGTTCAGTCTGGAGGAGAGGAAGCAGCTGGCGGAGGAGTGGTGTCGGCAGGGAAAGGGGAAaCTTGACCAGGTCATTGTTCACGTTGGCTGTCTGAATGTAAAAGACTCTCAGGAACTGGCTCGTCACGCTGCTTCAGTAGGAGCTGATGCCATCGCTGTCATCTCCCCCTCCTTCTTCAAACCCACTAATGCAGATGCGTTGAAGATGTTTCTGAAGGAGGTGGCGTCAGCAGCACCTGAGCTTCCTTTCTACTACTACCATTTACCCTCCATGACGGGAGTAAACTTGGAGGCGAGGGAGATTCTGGAGGGCATTGAGAATCAGATTCCCTCATTTAGAGGACTGAAGTTCAGTGGAACAGATCTCAGGGATTTGGGCCAGTGCGTCTGTTACTGCCGTCCGCACGGCTGGTCTTTACTCTACGGTGTTGATGAGCATCTCTTGGGAGCAGTAGTATTAGGAGTGAACGGTGCGGTTGGGAGCACTTACAACTACCTGGGCAACATTATGAACAGCATGCTGACTGCTTTTGAGAAAGGAGATATTGCTCAGGCCAGAAACCTTCAGtttAAGATGCAGGAGGTCATCACGTTCGCTGTCAGTCTAGgtttcaGCCTTCCCATGAATAAGCAGCTGATGAGTGAGTTTTCGGGCCTACATATGGGACCCCCGCGACTGCCACTACTGCCCTGCCCACCGGACCACGCTAAGAGCATCGCTCAGAAACTGCGGGATGTTCTAGCAGAGCAATAATGTCCTGCTCATCACTAAACAAACAGCACAGAGATAAATCCGCCGTACCGAGTGGAAAGAGACCAAAGGTCAGGTTTATTAACACATGTTGTTTTATCTTGTTCTACTGTTAATAAATCAGCCACTACAGCAACATTTCACTCAGCATTACTGTAACTACACTACAGTATatggacaattaaaaaaagtattgggtCACCTGttaa
>XM_022670191.1
TCTCCTCTTTGGACACGACTACGCTTGTATCCTATTGGATGGAAAAGAACTACATATCGCTCAGAACTACATTCACCAGAGTGTTTGAGTCTTCATGTGACTGCCGTGTGTTTTCCCTGCTACCTGATGAGAACTCAGCAAACAAGTAGATGCTGCTGTTTTATTGCTGCAAGTCGTCGATTGAGTAGGACGGAGGCGACGGATCGCAGGCACAGCTAGGGATGTCTCCAGGCACAGGGCAGCTCTCTGGGCTGGTCGCAGCTACCTTCACTCCACTCACTCCGCAAGGGGAGCTGAACCTGCCGGTGATTGGGCCGTATGTGGACTACCTGCTTGAGAAACAGGGCGTGCGGAGCGTGTTTGTGAATGGGACCACAGGTGAAGGCTGCTCGTTCAGTCTGGAGGAGAGGAAGCAGCTGGCGGAGGAGTGGTGTCGGCAGGGAAAGGGGAAaCTTGACCAGGTCATTGTTCACGTTGGCTGTCTGAATGTAAAAGACTCTCAGGAACTGGCTCGTCACGCTGCTTCAGTAGGAGCTGATGCCATCGCTGTCATCTCCCCCTCCTTCTTCAAACCCACTAATGCAGATGCGTTGAAGATGTTTCTGAAGGAGGTGGCGTCAGCAGCACCTGAGCTTCCTTTCTACTACTACCATTTACCCTCCATGACGGGAGTAAACTTGGAGGCGAGGGAGATTCTGGAGGGCATTGAGAATCAGATTCCCTCATTTAGAGGACTGAAGTTCAGTGGAACAGATCTCAGGGATTTGGGCCAGTGCGTCTGTTACTGCCGTCCGCACGGCTGGTCTTTACTCTACGGTGTTGATGAGCATCTCTTGGGAGCAGTAGTATTAGGAGTGAACGGTGCGGTTGGGAGCACTTACAACTACCTGGGCAACATTATGAACAGCATGCTGACTGCTTTTGAGAAAGGAGATATTGCTCAGGCCAGAAACCTTCAGtttAAGATGCAGGAGGTCATCACGTTCGCTGTCAGTCTAGgtttcaGCCTTCCCATGAATAAGCAGCTGATGAGTGAGTTTTCGGGCCTACATATGGGACCCCCGCGACTGCCACTACTGCCCTGCCCACCGGACCACGCTAAGAGCATCGCTCAGAAACTGCGGGATGTTCTAGCAGAGCAATAATGTCCTGCTCATCACTAAACAAACAGCACAGAGATAAATCCGCCGTACCGAGTGGAAAGAGACCAAAGGTCAGGTTTATTAACACATGTTGTTTTATCTTGTTCTACTGTTAATAAATCAGCCACTACAGCAACATTTCACTCAGCATTACTGTAACTACACTACAGTATatggacaattaaaaaaagtattgggtCACCTGttaa

Function

symbol description
npl Predicted to enable N-acetylneuraminate lyase activity. Acts upstream of or within N-acetylneuraminate catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including fin bud; gut; muscle; vein; and yolk syncytial layer. Used to study myopathy. Orthologous to human NPL (N-acetylneuraminate pyruvate lyase).

NR:

description
N-acetylneuraminate lyase

GO:

id name namespace
GO:0019262 N-acetylneuraminate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008747 N-acetylneuraminate lyase activity molecular_function

KEGG:

id description
K01639 E4.1.3.3, nanA, NPL; N-acetylneuraminate lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670190.1 True 1354 mRNA 0.50 12 11911168 11921164
XM_022670191.1 False 1351 mRNA 0.50 12 11911168 11921164

Neighbor

gene id symbol gene type direction distance location
LOC103043198 grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502 coding upstream 212205 11589324 ~ 11698963 (+)
nkx3-1 nkx3-1 coding upstream 623953 11284887 ~ 11287215 (+)
nkx2-6 nkx2-6,LOC107081961,LOC102231304,LOC103470093,LOC105012089,LOC106591187 coding upstream 651706 11255718 ~ 11259462 (+)
stc1 stc1,LOC107665189,LOC107747716,LOC107553168,LOC107559448 coding upstream 690044 11204075 ~ 11221124 (+)
LOC103034408 NA coding upstream 835338 11061148 ~ 11075830 (+)
LOC103023153 sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649 coding downstream 8134 11929298 ~ 11935136 (+)
LOC103041950 LOC108439388 coding downstream 44426 11965590 ~ 12065127 (+)
LOC103041649 slc35a3,LOC108439387,LOC107717552,LOC107585865 coding downstream 152467 12073631 ~ 12092223 (+)
LOC103041348 foxe3,foxe1,LOC103041348,LOC103130754 coding downstream 197749 12118913 ~ 12121673 (+)
LOC103047368 fcho1,LOC108442339,LOC107548880,LOC107717548,LOC107676711 coding downstream 530256 12451420 ~ 12538729 (+)
G51428 NA non-coding upstream 24689 11884009 ~ 11886479 (+)
G51429 NA non-coding upstream 27275 11883467 ~ 11883893 (+)
G51424 NA non-coding upstream 79458 11830899 ~ 11831710 (+)
G51425 NA non-coding upstream 81323 11825493 ~ 11829845 (+)
G51389 abt1,LOC107584932,LOC107601758,LOC107743137,LOC107653431 non-coding upstream 115155 11548983 ~ 11796013 (+)
G51494 NA non-coding downstream 81856 12003020 ~ 12006092 (+)
G51493 NA non-coding downstream 148254 12069418 ~ 12071897 (+)
G51556 NA non-coding downstream 255610 12176774 ~ 12176989 (+)
G51558 NA non-coding downstream 262615 12183779 ~ 12183979 (+)
G51569 NA non-coding downstream 476439 12397603 ~ 12447640 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other upstream 29147 11832681 ~ 11882021 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 1153913 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 1780367 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 2128447 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 3566654 8342940 ~ 8344514 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 162916 12084080 ~ 12129300 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 516240 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 1394575 13315739 ~ 13327325 (+)
G51745 NA other downstream 1435561 13356725 ~ 13368274 (+)
LOC103034181 prrg1,LOC108444325,LOC107585847,LOC107657931,LOC107700656,LOC107750596 other downstream 2248280 14169444 ~ 14201302 (+)

Expression


Co-expression Network