LOC103041649 (slc35a3,LOC108439387,LOC107717552,LOC107585865)


Basic Information

Item Value
gene id LOC103041649
gene name slc35a3,LOC108439387,LOC107717552,LOC107585865
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 12073631 ~ 12092223 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670194.1
GTCGACTGTGTCATCATAAGCCCGCCTGTGGGAGGTTTACATCCTGGTTCTTTGTCTCTCAGCCAGGGTTTGACAGGGCgtctttgtgtgttttgtgactGCAGGTGGAGTTGATCGTTGATCTGCAGGCTTGGTGTTGGGCAGGAGTGTGTGAAGGGGTGTGAGATGAGTTTATAGTAATGGTtggactttttttgttttaatgccGACATgggtttactataaatcatgctGGGTAAGAGTAGTGTGGTAGGTTTTTTAGTGAAAGTGAGCAGTTTTGTGGATTGCTTGTTTTCTGCCTGGATTTAATGGGCTTCAGCTGTACTGTCCAATCACCATTGAGTTGCATTTCATTTAGTCTTCCAGTCATGACGTCCGCCAGGTTAAAGTACCTGTCCCTGGGTGTGCTGGTGTTCCAGACCACGTCGCTGGTGCTGACCATGCGCTACTCGCGCACCCTGCAGTCAGACGGCCCACGCTACCTGGCCTCCTCCGCCGTGGTGGTGGCTGAGCTGCTGAAGATCCTCACCTGCATCGGCCTCGTTTGCAAAGAGCACAGTTACAGCGTCCGAGCTCTACACAGCGTCCTCAGACAGGAGATCCTTCACAAGCCCATAGAGACGCTGAAACTGGCCATTCCCTCAGGAATCTACACTCTTCAGAACAACCTGCTCTATGTAGCGCTGTCCAATCTGGATGCGGCTACGTACCAGGTGACCTACCAGCTGAAGATCCTGACCACAGCTCTTTTCTCGGTCTCCATGCTGGGACGCAGACTGGGTCTGTACCAGTGGCTCTCGTTGCTCATCCTGATGGCTGGAGTGGCTCTTGTACAGTGGCCCACAGACTCCCCGGGCACGCCTGAGAAGGAGCAGCCTGCGTCCGGTTCACCGTTTGTGGGGCTGGTGGCCGTGCTGGTGGCCTGCTGCTCCAGCGGCTTTGCCGGCGTCTACTTCGAGAAGATTCTCAAAGAGACCAAGCAGAGTGTTTGGGTCAGGAACATACAGCTAGGTATGTTCGGCCTGGTGTTCGGCCTGTTTGGTATGGTGCTGtatgatggagagagagtgcGGGAGCATGGAATGTTCCAGGGCTACAACTCTATCACCTGGACCGTCGTCTCCCTACAGGCTCTGGGAGGACTGGTCATAGCTGCTGTTATTAAGTACGCAGACAATATCCTTAAAGGCTTTGCCACCTCGCTCTCCATCATCTTGTCAACACTTATCTCCTACTTCTGGCTACAGGACTTTGAGCCAACGAGCATCTTTTTTCTGGGAGCAGTTTTGGTCATAGTTGCGACGTTTCTTTATGGCTATGAAAGTAAACCAGCATCCATCCCCAGCCGGGCATAACTGGGGGAGCTGGAGACTCAGGAAGTGTGAGATCCCGAGTTAGAGGAGAGGAAAACCAAATGGAGAATGGAAAAGGAGGATTTTAACAAGAATGAAGGAAGAGGAGGATTGTGGGAGGAGATGAACAGGTCCTTGTGGTGCTGATCTGGGAGGAACGCCTTGATGTGAGCAGAGAATGGAGACTTTGGTGATCTGGAGGAGCCAGAATTACCCCCAGATCACCTCTTGTAGTGATATTTTATGCCAAATGCTGACATACTTGATGGACATGAGCGAGAGAAGCTCTCTGGAGCTGCATCTGCTGTACACGACGGAGGTGCACATCCTTTTAAGTGTTGGGACTTCTATTAAATTCTATTTAGAACTGAAGCAGGTACTTGGGCGGCACCAGCAGTCAGGTCAAAAGGTCACCATTAATTCAGCCATATCAGCCACGCTGTGCCACACCTCAGCTGTGATGGATGGAGGTGTTGTCTCACAAGTGTCACCCATCATTTCACCATCAATAAAGCCTGCATACCCCGGACGAGAACGAGAATAGAAGTAGAATGTTTTACTGAAACTTGAAGaaatataaagagaaataataTGAAATCACTGTAGGGGGCCaggcagggggggggggggttattgtTTGTATTGATGGGAAGAAGGATTCCCATTGAATGGGAAAAGTAATTTCTTCACAGCGGTGTCTTCACTCTGACTCAAGAAGAAGACACTTTCTGTACTGATCATTTGACAATAATCAGCCATGTGACTCATGCCAGTAAAATTCttcttaaaatgaaaa
>XM_022670195.1
ACTGAATGAGGAAACAGAGCGGCAGCAGGAAGTGTCGGATGATGGCAGCAGCACAGCTTCAGGCGGAGAGGTGCAGATTTAGAAGCGCTTTCTGATTCAGCACAGCCTGAAACACAGAGGGAGAGCGGCCGGCGGAGTCCGACAAcctatcagcagcagcagcggggaGAGAGCGGCATGGCGGCGGGCTGTTTACTGAGAGAGCCCCGTAGCTCCAGCAGGAGAGACCGGACCCAAGACTGCTGCAGCCCGAGAGACTGAACCTCACCGTCTCCACTGCTCCTTACTGCTGCTCAGAGCTTCTCACTGCTCCGTAAAGCTCCTCATAcctctttactgctcctcagAGCTCTTCACTGCTCCTCATACATCACCAGAGCTTCTCAGAGCTCTACTTAACTTCTGACAGCTGAGGACTTCACGTCGTTTAGCTTATCTTTATTATTTTGCAGTGAGTTCAGCTCTCTTCCGGATCCAGCAGAAACTTTGAAGTCTTCCAGTCATGACGTCCGCCAGGTTAAAGTACCTGTCCCTGGGTGTGCTGGTGTTCCAGACCACGTCGCTGGTGCTGACCATGCGCTACTCGCGCACCCTGCAGTCAGACGGCCCACGCTACCTGGCCTCCTCCGCCGTGGTGGTGGCTGAGCTGCTGAAGATCCTCACCTGCATCGGCCTCGTTTGCAAAGAGCACAGTTACAGCGTCCGAGCTCTACACAGCGTCCTCAGACAGGAGATCCTTCACAAGCCCATAGAGACGCTGAAACTGGCCATTCCCTCAGGAATCTACACTCTTCAGAACAACCTGCTCTATGTAGCGCTGTCCAATCTGGATGCGGCTACGTACCAGGTGACCTACCAGCTGAAGATCCTGACCACAGCTCTTTTCTCGGTCTCCATGCTGGGACGCAGACTGGGTCTGTACCAGTGGCTCTCGTTGCTCATCCTGATGGCTGGAGTGGCTCTTGTACAGTGGCCCACAGACTCCCCGGGCACGCCTGAGAAGGAGCAGCCTGCGTCCGGTTCACCGTTTGTGGGGCTGGTGGCCGTGCTGGTGGCCTGCTGCTCCAGCGGCTTTGCCGGCGTCTACTTCGAGAAGATTCTCAAAGAGACCAAGCAGAGTGTTTGGGTCAGGAACATACAGCTAGGTATGTTCGGCCTGGTGTTCGGCCTGTTTGGTATGGTGCTGtatgatggagagagagtgcGGGAGCATGGAATGTTCCAGGGCTACAACTCTATCACCTGGACCGTCGTCTCCCTACAGGCTCTGGGAGGACTGGTCATAGCTGCTGTTATTAAGTACGCAGACAATATCCTTAAAGGCTTTGCCACCTCGCTCTCCATCATCTTGTCAACACTTATCTCCTACTTCTGGCTACAGGACTTTGAGCCAACGAGCATCTTTTTTCTGGGAGCAGTTTTGGTCATAGTTGCGACGTTTCTTTATGGCTATGAAAGTAAACCAGCATCCATCCCCAGCCGGGCATAACTGGGGGAGCTGGAGACTCAGGAAGTGTGAGATCCCGAGTTAGAGGAGAGGAAAACCAAATGGAGAATGGAAAAGGAGGATTTTAACAAGAATGAAGGAAGAGGAGGATTGTGGGAGGAGATGAACAGGTCCTTGTGGTGCTGATCTGGGAGGAACGCCTTGATGTGAGCAGAGAATGGAGACTTTGGTGATCTGGAGGAGCCAGAATTACCCCCAGATCACCTCTTGTAGTGATATTTTATGCCAAATGCTGACATACTTGATGGACATGAGCGAGAGAAGCTCTCTGGAGCTGCATCTGCTGTACACGACGGAGGTGCACATCCTTTTAAGTGTTGGGACTTCTATTAAATTCTATTTAGAACTGAAGCAGGTACTTGGGCGGCACCAGCAGTCAGGTCAAAAGGTCACCATTAATTCAGCCATATCAGCCACGCTGTGCCACACCTCAGCTGTGATGGATGGAGGTGTTGTCTCACAAGTGTCACCCATCATTTCACCATCAATAAAGCCTGCATACCCCGGACGAGAACGAGAATAGAAGTAGAATGTTTTACTGAAACTTGAAGaaatataaagagaaataataTGAAATCACTGTAGGGGGCCaggcagggggggggggggttattgtTTGTATTGATGGGAAGAAGGATTCCCATTGAATGGGAAAAGTAATTTCTTCACAGCGGTGTCTTCACTCTGACTCAAGAAGAAGACACTTTCTGTACTGATCATTTGACAATAATCAGCCATGTGACTCATGCCAGTAAAATTCttcttaaaatgaaaa

Function

symbol description
slc35a3 Predicted to enable UDP-galactose transmembrane transporter activity. Involved in UDP-N-acetylglucosamine transmembrane transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi apparatus. Predicted to be integral component of Golgi membrane.

NR:

description
PREDICTED: UDP-N-acetylglucosamine transporter-like isoform X1

GO: NA

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670194.1 False 2148 mRNA 0.50 8 12075467 12092223
XM_022670195.1 True 2282 mRNA 0.51 8 12073631 12092223

Neighbor

gene id symbol gene type direction distance location
LOC103041950 LOC108439388 coding upstream 8504 11965590 ~ 12065127 (+)
LOC103023153 sec22b,sec22bb,LOC108439390,LOC107548814,LOC107750823,LOC101168279,LOC100705437,LOC107676649 coding upstream 138495 11929298 ~ 11935136 (+)
npl npl coding upstream 152467 11911168 ~ 11921164 (+)
LOC103043198 grm6a,LOC108439669,LOC107601768,LOC107674373,LOC107653428,LOC107743101,LOC106566502 coding upstream 374668 11589324 ~ 11698963 (+)
nkx3-1 nkx3-1 coding upstream 786416 11284887 ~ 11287215 (+)
LOC103041348 foxe3,foxe1,LOC103041348,LOC103130754 coding downstream 26690 12118913 ~ 12121673 (+)
LOC103047368 fcho1,LOC108442339,LOC107548880,LOC107717548,LOC107676711 coding downstream 359197 12451420 ~ 12538729 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759 coding downstream 513042 12605265 ~ 12644596 (+)
LOC103044019 LOC108439652,LOC108264986,LOC106584369,LOC107585931 coding downstream 754842 12847065 ~ 12876713 (+)
LOC103040421 mob3a,LOC108439653,LOC103368804,LOC100699828,LOC104921817,LOC102783145,LOC104944351,LOC103137270 coding downstream 786413 12878636 ~ 12894487 (+)
G51493 NA non-coding upstream 1734 12069418 ~ 12071897 (+)
G51494 NA non-coding upstream 67539 12003020 ~ 12006092 (+)
G51427 NA non-coding upstream 144877 11901883 ~ 11928754 (+)
G51428 NA non-coding upstream 187152 11884009 ~ 11886479 (+)
G51429 NA non-coding upstream 189738 11883467 ~ 11883893 (+)
G51556 NA non-coding downstream 84551 12176774 ~ 12176989 (+)
G51558 NA non-coding downstream 91556 12183779 ~ 12183979 (+)
G51569 NA non-coding downstream 305380 12397603 ~ 12447640 (+)
G51580 NA non-coding downstream 371745 12463968 ~ 12545418 (+)
G51581 NA non-coding downstream 422162 12514385 ~ 12515605 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other upstream 191610 11832681 ~ 11882021 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other upstream 1316376 10687885 ~ 10757255 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other upstream 1942830 10123720 ~ 10130801 (+)
G50889 grid2,LOC107556295 other upstream 2290910 9643374 ~ 9782721 (+)
G50583 LOC108437602,LOC103398889 other upstream 3729117 8342940 ~ 8344514 (+)
znf692 znf692,LOC108442337,LOC107750903,LOC107695246,LOC106613837 other downstream 345181 12437404 ~ 12448516 (+)
G51743 dohh,LOC107745802,LOC107695215,LOC107585881,LOC107548993 other downstream 1223516 13315739 ~ 13327325 (+)
G51745 NA other downstream 1264502 13356725 ~ 13368274 (+)
LOC103034181 prrg1,LOC108444325,LOC107585847,LOC107657931,LOC107700656,LOC107750596 other downstream 2077221 14169444 ~ 14201302 (+)
G52110 sh3gl1,sh3gl1b other downstream 2214391 14306614 ~ 14324917 (+)

Expression


Co-expression Network