LOC103040738 (adamts10,LOC107676806,LOC107731268,LOC107585873,LOC106613844)


Basic Information

Item Value
gene id LOC103040738
gene name adamts10,LOC107676806,LOC107731268,LOC107585873,LOC106613844
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 12765442 ~ 12845446 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670212.1
CTCCTGCTGCTGTCTGCCCGGCTACACGGAGCAGCTTCTCCCGGACAGAGCAGAGAGGAGGACatatacaaaacatataaaaacatatataaaccatATATTAACCATATATAACCCAGAAACTGCAGAACACAAACCCTGCACTGATCCTCTCAGCATGAAGCCGTGAAGAAGGAGGACCTGGACCAGCTTCAGATACTCCAGAACCCTGCTGCCACTGCCTGAACTGAGgGCCCAAAACGTTCTAACCCAGGACCCACAGAAGTGAACGCAAGGGCAAGTGACCTGTGTGGAGTTAAGCtgaacacaagcacacacacacacacacaaacacacacacacatagaaactCATAAACCAGCACAGCCCTCCCCAGCCATGGCTCCAGAATTCAGCGCGTCACACTGGTGATCGAGGGGGCGTCCCAGGCAGAAGACATGGTGGGACGGAGGGCTGGGCACCTCAGTGAAGCTAGCTGTAGTTACCATGGAAACGGTGTGGAGGACCTTGGCCTGGGTTGGGGTCATTGCCATGGTGTctgctggagcaggagcgggTCCCTCAGCTCAGGACGGCCAAGCTGCGTTCCTGTCCAGTCTGGATCAATATGAGATTGCCATCCCGATCCGCGTGGGTCCCGTGGGGGAGGTACTGCACACAGAGGAGCATTCAGGTGGGCACGGGAGGCGGCGGAGGAGTGCGGAAAGGCAGCAGCCGGAGACCCCCGACCCGCAGGTGTTTTACCAGCTGTCCACGCCCAGCTCCAACCTGTTCCTGAACCTGACGCTGCAGAGCGGCCTGCTCTCGCGCCAATTCCGCGTGGAGTACTGGAGGAGGGGCCGGCTGGCCTGGAGTCACCCGTACTCGCCTGGCTGCCACTACGTGGGTCACCTGCAGCACCAGCCTCAGGCCAGCACTGTGGCCCTCAGCAACTGCAACGGCCTGCAGGGGGTGATTGTATCTGGTGGAGAGGAGTACCTCATTGAGCCCTTGGTTTCTGCTGAAAACCACACCAGTGTGGACGGGAGAGAAGGACGCCCCCATGTGGTGTATAAAAGATCGTCCTTGCGACACTTGTACATGGACCAGTCCTGTGGAGTCATTGATGAAAAACCCAGCAAAAGCTTCAGTTGGTGGCAGCGAACCATCAAACCCTCCCCCAACCAGATGGGCCGTGGCCAGCTGCCGCTGAAGCGTTCGGTTAGCCGAGAGCGCTATGTGGAAACGCTGGTGGTGGCGGATAAGATGATGGTGGGGTACCACGGCCGGCGAGATATTGAGCAGTACATCCTGGCTGTTATGAATATTGTTGCCAAACTGTTCCAGGATTCTAGCCTGGGGAACGCAGTGAACATCGTGGTGACTCGACTGATCTTACTAATGGAAGACCagCCCAGTCTGGAAATAAACCACCACGCGGGGAAGTCCTTAGACAGTTTCTGCAAGTGGCAGAAATCCATCCAGCACCGGAGCAGCCATGGAAACGCCATCCCTGAAAACGGCATCGCTCACCATGACACGGCAGTTCTCATCACAAGATACGACATCTGCATCTACAAGAACAAGCCCTGTGGAACCCTGGgtcTGGCCCCGGTTGGTGGAATGTGTGAGCCAGAGAGAAGCTGCAGTATAAATGAAGATATTGGGCTGGCCACGGCGTTCACCATCGCTCATGAGATCGGACACACGTTCGGTATGAACCATGACGGAGTCGGGAACGCGTGCGGAGCGCGAAGCCAGGAGACAGCCAAGCTCATGGCCGCCCACATCACCATGAAGACCAACCCCTTCGTCTGGTCGGCCTGCAGCCGCGATTACATCACAAACTTCCTGAActctggaatggGATCCTGTGTGAACAATGTTCCTCCGAAGCAGGAGTTTGTGTACCCCACCACAGCCCCGGGGCAGGCGTACGATGCAGACGAGCAGTGCCGCTTCCAGCATGGAGTGAAATCTCGCCAGTGTAAATACGGGGAGGTGTGCAGTGAGCTGTGGTGTATGAGTAAGAGTAACCGCTGTATAACCAGCAGCATCCCGGCCGCTGAAGGCACCATCTGCCAGACCAGCACCATAGAGAAAGGGTGGTGCTATAAGCGAGTGTGTGTTCCTTATGGGACTCGTCCTGAGGGAGTGGACGGCCAGTGGGGTACGTGGTCACCGTGGGAGGACTGCAGCCGGACGTGTGGGGGCGGAGTTTCTTCATCCATTCGCCACTGTGACAGCCCTAGGCCGACCGTTGGAGGACGCTTCTGTTTGGGGGAGAGGAAGCGCTTCAGATCCTGCAACATTGAAGAGTGTCCCCCTGGCTCTCAGGATTTCAGAGAGATTCAGTGCTCTGATTACGACAGCGTTCCCTTCCGAGGGAAATTCTACACCTGGAGGCCGTACAGGGGCGGTGGGGTCAAATCCTGCTCTCTGAACTGCTTGGCCGAGGGCTACAACTTCTACACTGAGCGCGCTCCAGCCGTGGTGGACGGGACTCCCTGCAGGGACGACTCTCTGGACGTGTGTGTGAACGGAGAGTGCAAGcatgtgggaTGCGATAAAATCCTTGGCTCGGACGTCCGAGAGGACCGCTGccgtgtgtgtgggggggatgGAAGCAGCTGTGAGGCCATCGAGGGCGTCTTCAATGACTCACTGCCTGAAGGAGGTTATGAAGAGGTGATCAGGATTCCTAAAGGATCTGTGTTCATACATATTCAAGAGCTCAACGTGTCCCTTaattatttggttctgAAGAGTAAAGGTGACCAGTACTTCATTAATGGTAAACTGACCATCGACACGCCTCGCCGGTTTGACATCGCAGGAACCACCTTCCACTACCGTCGTCCCGCAGACCAGCCAGAGACCCTAGAGGCCCTGGGGCCCACCAACATGACCCTTATTGTAATGgTGCTTGTGAGGGAAGAGAATCCATGTATTCATTACCGGTTTAACCCCCCTGTGAGTCGAGACACCCTGAGTGGATTTGCCTGGCATTACACATCCTGGAGTCGCTGCTCTGTTACCTGCGCTGGAGGGTTTCAGATCCAGCAGGTCGTGTGTAAGAAACAAGCAGATCACTCTGTGGTCTACAACCACTTCTGTGACAAGAGGAACAAACCTAAAGACAAGAAACGTCCCTGCAACACGGACCCCTGTCCCCCAACttggTGGGTGAGCGAGTGGTCAGAGTGCAGTAGAAGCTGTAGTGGTGGGGTGCGGACCCGCGAGGTTCTGTGTAAGAGGAAAATCACACCCACAGATGAGAAAGTTCAGGACGATTGGTCCTGTACCGCCCCCCGGCCCCCCGTCACTGAGCCCTGCGACAACCACACCTGCCCACCGGAGTGGCACGCACTGGACTGGTCTGAGtgCACTCCTAGCTGTGGTCCTGGTTACAGACAGAGAGTGATCCTCTGTAGAAGTGGAGAAGGTGGAGATACTCTGAATGAGTCTGAGTGTCCGAAGCATGGCCGTCCCACCACTAGGATGCGCTGTAACCTGCAGCGCTGCCCACCTCCACAGTGGCTCGCCGGACCCTGGGGCGAGTGCTCAGCTAAGTGTGGTCTGGGGCAGCAGATGCGCTTGGTGCAGTGTTTGTCACACACAGGCCAGCCGTCCAGCGAGTGCCCAGAAATGCACCGGCCGGCCGCCATGCAGCAGTGCAGGAGCCGGTGTGACCTCAGCAGCCCCACAGATGACCCCGAGGAATGCAAAGATGTGAACACAGTGGCGTACTGCCCCCTGGTGCTCAGGTTCAAGTTCTGCAGCCGTGCTTACTTCCGACAGATGTGCTGCAAGACCTGCCAAGGACACTGACctcctgtctccctctctcctctcgtCTTCTCCATCACTCTGCCTGAGCCAGCTCCGCCCCGGCTCCACATtccagagcagagagagagagaaacagagcgagagagagagagaaactgtgcTGCTGTCTTTAACTATCCAGTCCAGCTGCTCTGAATATCGGACGGTCAGAGACTCGTCTGCCTTCTTTTAGCTCTCTTTAGCATGGTGCTAGTCTTGTGTCGGCCATACCGTGTACCCTCAGCTCTCTCAGATCCGGCCGGGTCCAGCCTCTGAGGACCACAGCACTGCACACTTCAGTGTTTTCATTTATCCGCTGCTAcacaagaaaaatattttacattataaacactCTATTTTTTCACACATTGTTGTCAACAAGTTACATTTCAGAAAGAGTTTGCCTCCACCCCCCCATGtaaaatttccttttttttttttgtttaactgttTCATTTTTAGACTATTTCTAAAGTAGAACTATTATCTAACtattaacatctagctaacctCAGCCAGAGTATGTTAGCTTCTAGCTAACCTCAGCTAATGTATTAACTTCTagctaatataaattaaaattaacatcAAGCTAAATATCAGCTAGAGTATGTTAGCTTCAagctaatataaataaagttaacaTCAAGCtaaacatcagctagagcatgttagcatttagctaaacatcagctagagcatgttagcatttagctaaacatcagctagagtaatTAACATCTAGCTAAACTTCAGCTAGAGTATGTTACCATCTAGTTAATAGCTAGAGTATGTTAACATCTTGCTAACCTCAGCTAGTGTATGTTAGCTTCAAggtaatataaataaagttaacaTCGAGCtaaacatcagctagagcatgATAGCATTTAGCtaaacatcagctagagtaatTAACATCACACTAAACTTCAGTTCAATTTAACATCTAGTTACAAATCAGCTAAAGTATGTTAACATCTAGCTTACCTCAGCTAGAGTATATTACCATCTAGTTAATAGCTAGAGTATGTTAACATGTAGCTAAGCATTGGTTAAAGAATTTAACATCTTGCTAACCTCAGCTAGAGTATGTTAACATTTAGCTAACCTCAGCTACAGTGTGTTAGCTTCAagctaatataaattaaagttaACATCTAGTtcaacatcagctagagcaagttagcatttagctaaacatcaactaaaataattaacatcTAGCTAAACTTCAGCTAGAGTATGTCAACTTCTAGCTAAACATCAGTTCAAGTTAACATCTACTGTAGTTACAAATCTGCTAGAGTatgttaacatctagctaacctCAGCTAGTGTATATTACCATCTAGTTAATAGCTAGAGTATGTTAAGATATAGCTAAGCATTGGCTAAAGAAGTTAACATCTTACTAACCTCAGTTAGAGTATGTTAACATTTAGCTAACCCTTAGCTAGAATATCTTAACTTCT

Function

symbol description
adamts10 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Weill-Marchesani syndrome. Orthologous to human ADAMTS10 (ADAM metallopeptidase with thrombospondin type 1 motif 10).

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 10

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08625 ADAMTS10; a disintegrin and metalloproteinase with thrombospondin motifs 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670212.1 True 5285 mRNA 0.51 26 12765442 12845446

Neighbor

gene id symbol gene type direction distance location
LOC103044727 myo1f,LOC108413823,LOC108264988,LOC107750961,LOC108238367 coding downstream 19362 12698781 ~ 12746080 (-)
acer1 acer1,LOC107585930,LOC107731201,LOC107676796 coding downstream 70577 12679475 ~ 12694865 (-)
LOC103045339 mllt1a,mllt1 coding downstream 88543 12652988 ~ 12676899 (-)
rfx2 rfx2,LOC106584375 coding downstream 162441 12544875 ~ 12603001 (-)
LOC103047683 LOC108442341 coding downstream 329625 12423633 ~ 12435817 (-)
dohh dohh,LOC107745802,LOC107548993,LOC106584359 coding upstream 481221 13326667 ~ 13333011 (-)
haus5 haus5 coding upstream 501793 13347239 ~ 13368318 (-)
wdr13 wdr13,LOC107584863,LOC106572373,LOC107552201 coding upstream 524451 13369897 ~ 13390106 (-)
LOC103033264 NA coding upstream 599940 13445386 ~ 13457273 (-)
LOC103033893 NA coding upstream 615018 13460464 ~ 13467261 (-)
G51671 NA non-coding downstream 9081 12755955 ~ 12756361 (-)
G51668 NA non-coding downstream 11763 12753137 ~ 12753679 (-)
G51666 NA non-coding downstream 12646 12752498 ~ 12752796 (-)
G51631 NA non-coding downstream 222435 12537239 ~ 12543007 (-)
G51637 NA non-coding downstream 248521 12516471 ~ 12516921 (-)
G51843 NA non-coding upstream 6147 12851593 ~ 12932059 (-)
G51850 NA non-coding upstream 26556 12872002 ~ 12872705 (-)
G51867 NA non-coding upstream 110531 12955977 ~ 12957174 (-)
LOC111192613 NA non-coding upstream 200090 13045536 ~ 13075340 (-)
LOC111192612 NA non-coding upstream 232886 13078332 ~ 13094834 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 883501 11831802 ~ 11881941 (-)
G51346 NA other downstream 1561019 11204054 ~ 11204423 (-)
G51187 kansl3,LOC107678435 other downstream 2448975 10313482 ~ 10316467 (-)
LOC103023850 NA other downstream 2467994 10294056 ~ 10297448 (-)
LOC103022194 LOC103022194 other downstream 2478499 10282487 ~ 10286943 (-)
smim24 NA other upstream 439857 13285303 ~ 13323683 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other upstream 720552 13565998 ~ 13592947 (-)
G51960 glis1 other upstream 817955 13663401 ~ 13664114 (-)
G52161 NA other upstream 1563490 14408936 ~ 14411611 (-)
G52299 NA other upstream 2230850 15076296 ~ 15084568 (-)

Expression


Co-expression Network