LOC111192617


Basic Information

Item Value
gene id LOC111192617
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14000804 ~ 14007757 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670247.1
cagaatcgCTGGAGCTCGGGGAACCGGACCGCGCTCGGACCCGCCGTGTCCAACTCTGGCCCGGTTTCACTGCTAATCTTTGGGGATTtgtgcaaaacaaacacaaagctgGGATAAACTCTGTGTATCTGTTGGTGGTCTTGGTCCGCAGTTCCGTCCTCACTCTGAGAAAAGTGTGATTTTGGATTGTGAAGTGAAGCTGCTGCTGGATTCCCACCATTCAGCTGAATGAGGATGAACTGAAGAGGACTGCTGAGACATGGTGACCCGGGGGAACTTAGATGAGCGCTGAGTAATGAGGAGGAAGATCCATCATGGCATTGCAGAAGATCGAGGTGCTGAAGGGTCTGGAGGACGTGACGCTGTGTGAGAAGGAGGCCCACACCTTCGAGGTGATCCTGAGCCATTCTTACGTCCGCGGCACCTGGAGCAGGAATGGGGTTCCGCTCAAATCCAAGCCCACTTGCAGGATCTCAGCTCAGGGGAAGACTCACACTCTGACCCTGACCCGGCTCTCTCTGTCAGATATGGGTCTGATCTGCTTTCAGGCAGAGGGAGCCGAGAGCTCAGCTACTCTCACAGTAACAGCCAGAGATATAGAGATAGTAAAGCATCTTCAGGACATCAGTGtgacagagcgagagacagtgacGCTGGTGTGTGAGGTAAACCTGGAGGAAGTGGACGGGAAATGGTTCAAGAACAGCAGCAGAATAAAAGCGGGAGACAACGTTAAGATCAGATGTGAAGATAAAACTCACTCACTGACCTTCAGAGCCGTGAAGCCAGAGGATGCCGGGGAGATCATGTTTATGGGTGAGAGAGTTTCATCGACGGCAGTGCTTACAGTTACAGAGCTTCCGGTTCATATCACACGGCCACTCCGGGCGAAGATCGCCATGTATAAACACAGGGCACTGCTGGAGTGCCAGCTCTCCCGCGCCAACGCTGAGGTCACATGGTACAAGAGGAACCGTGAAATCGTATCTCACGGGAAATATCAGGTGGTGAGTGATGGTGTTTACAGACAGCTCACCATTGACGAAGTGGGCACTTCAGATGAGGACATCTTCACCTGTGATGCTGTTGATGACTCCACTTCCTGTCAGCTGTTTGTGGAGGGTGAGCTACTCATAGCTGTTTGTGGACGGCCCAAcctgtgctaatgctaacgtttTAGTTTTTACGCGAATGTTTGCGATGATTACATTTTAATGAATGGGAATTAAGTATGTATGCAATGCAT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04371 Apelin signaling pathway
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670247.1 True 1246 mRNA 0.51 6 14000804 14007757

Neighbor

gene id symbol gene type direction distance location
LOC103027544 LOC108442360 coding downstream 5445 13913721 ~ 13995359 (-)
dmap1 dmap1,LOC107750524,LOC107758267,LOC107585836,LOC107699933,LOC107548533 coding downstream 89513 13902215 ~ 13911291 (-)
LOC103027869 LOC108442365 coding downstream 146533 13790533 ~ 13854271 (-)
LOC103024702 guk1b,LOC103024702,LOC107585833,LOC107758268,LOC107657930,LOC107750510,LOC108442369,LOC105895130,LOC105895024 coding downstream 215475 13770161 ~ 13785329 (-)
c6h1orf228 NA coding downstream 231810 13760669 ~ 13768994 (-)
LOC103023638 LOC108442362 coding upstream 7707 14015464 ~ 14031107 (-)
mindy4 NA coding upstream 69007 14076764 ~ 14092865 (-)
nexn nexn coding upstream 87576 14095333 ~ 14121329 (-)
tmem47 tmem47 coding upstream 158912 14166669 ~ 14187067 (-)
cpox cpox,LOC102782768 coding upstream 203833 14211590 ~ 14221513 (-)
G51992 NA non-coding downstream 115245 13879399 ~ 13885559 (-)
G51958 NA non-coding downstream 360685 13639888 ~ 13640119 (-)
G51941 NA non-coding downstream 510605 13487919 ~ 13490199 (-)
G51932 NA non-coding downstream 566259 13433901 ~ 13434545 (-)
G51842 NA non-coding downstream 598561 13367425 ~ 13402243 (-)
G52024 NA non-coding upstream 4616 14012373 ~ 14014008 (-)
LOC111192619 LOC108442363 non-coding upstream 30583 14038340 ~ 14063185 (-)
G52064 NA non-coding upstream 91254 14099011 ~ 14100478 (-)
G52127 NA non-coding upstream 152019 14159776 ~ 14160951 (-)
G52132 NA non-coding upstream 194409 14202166 ~ 14215562 (-)
G51960 glis1 other downstream 336690 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 407857 13565998 ~ 13592947 (-)
smim24 NA other downstream 677121 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2118863 11831802 ~ 11881941 (-)
G51346 NA other downstream 2796381 11204054 ~ 11204423 (-)
G52161 NA other upstream 401179 14408936 ~ 14411611 (-)
G52299 NA other upstream 1068539 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2153883 16161640 ~ 16219847 (-)
G52493 NA other upstream 2174978 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 2218479 16226236 ~ 16227174 (-)

Expression


Co-expression Network