LOC103023638 (LOC108442362)


Basic Information

Item Value
gene id LOC103023638
gene name LOC108442362
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14015464 ~ 14031107 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670248.1
GTTACGGCTCATCTCGGCGTGTCTCGACTCCATTCGGTTCAGCTCGGGTGTCGTTTGCTCCATTCGGCTCGGCTCGGGTGTCGTTTGCTCAGTTCGGCTTGACTCGGGTGTCGAGTTGCTTAGTTCGGCTCGGATCGGATCGGCTCGGGTGCTCGTGTTTCCCTGGAGACGGACTTGTTAGTCTCTGAGGGCAGGGGACGAGTCTTGGTCTCGGTTTTAGATCAAAAACGgttctttaaaatgatttatagaCTCTTAGCTGGTTTGTTAAATCGATATTAGTTTTTGAACATAATTTAAACGTGTTAATACATCGATATTGATGCAATAAACAGCGCCGGCTTACTGACATCTGTCAGCTGCGTTAGTTAGAGAGTTAGTTTTGGGGTCTTACGTTAGTAGCGTTAGCTGCGTTAACTGCGGTGGCGGTGCCATGTCTCACAGTCTGTACAGTAAGCTCTGGAGCGGGGCTCAGGAGGAGCTGGGCAGCCTGCTGACCCAGGAACTGCCCGTCGAGCCTCTCCGACCCGAGAGAGACCGAGTGGTGTTCTTCCAGCGGCTCGCGACCCTTTACGTTCGCTACGTCCAGATCTTCAGGCAGCTGGAGGAGGCGTATGACCAGATCGTCCAACCTCAAAAGAGGATTCTGATCCGACAGGTTCTGGACAACGTTATTGGGCGCGTGCTGGAGCTCAAGAACGAGATGGTGGAGAAGGAGTACTCTGAGTATCACTACATGGATGATGTCATACAGGATATGAAACTAACACCTGAGGATCTGGAAATTCCAATCCCACGGTATTTCATCAGCGAGCGGAGCAAAGTGCTGCGGGACCGGAGCAAAATACTCTCCAGCATTCTGGAGAAGCTAGAAGTGGTAGAGAAGCCTAAAACTGGTGCAGAGCGAACGCTGAGCATGGAGAAGGCCATTAGGATCATTCAGGTGACAGAGAGGGCGCGGCAGGGTCGTCTGAGGGCCAAGTTCATGCGGGAGATCCAGAGGGATCAGGAAAGGCAGAAGAAGAGTTTGAACAGGGACCTCGGAGAAGCTGCTGCTGAACAGGCTGCTATCTGCATCCAGAAGGTGTGGAAAGGTTTTATGCAGAGGAAGAGAACGAAGCAGGAAAGTGAAGAGGAGATGATTTTCCTGGGGATGGCTCCAGACCACAGCCTGCCCCAGCCTTGCCCCGCCTCCGTGGTTGCTGAGGACACTAAAAACCGCAGGAGGATCAGGCAGGAGGAGCATGAAGAAGACTACCAGAAATCCATCATCTCCATCACTAACAGCCTGCGGGAGGTGGAGGGCCCCGACATGAAGGAGAACATGAAGGATCAGATACGGCAGTGGTTCATCGAATGCCATGATGCAACAGGTTCGTTTCCTGATTTTCCAGAAGAAGAAGACGGCGGCTCTTCTCTCATTTTTGCTGATAAAACACCTGAACAGCTGATGGAGGAGCTGGCAGCTAAAGAAGAGGAGGAAACCAGCAAAAGACCTAAAGGAAAGGAGGAGAATATAGACAGGAGGAAAGGACCAGGAGAAGAGGAGGAGGAGGAACCTGGACTGATGATGCTGCCTTCTGCCTTTCTGTCGCAGCTGCAGACTGGACAGAAAACCTTTACCGATGTTTGGAAGAACAGAGAGGAGTCCAAGAACTTCAACCAGAGACATGAGGCAGAGCTCATcaaagaggagaagaggaaggAGATCGAGGCAGAAATAAGACTTCAGGTGGATGAGCTGATGAGGCAGGAGCTTGCTAACTGGAAGTTGGCTGTAGACGGAGATAAAGGCGGGAAGGCCAAAGCTGCTGCAAAGaaaaagaagGCATCAAAAAgtgggaagaagaaaaaaaaagagaaggatcTCACGGCAGATAGGACCATCGAGTCGCTGTACCAAGAACTGGTGGAGCAGGGGCTGTTAAAACCAGCAGATAATGTTAAATTACAGGACTACATAGGTGATTATAGCTACCTTGGCACCACCCTGCGGCTGACAGACATTGAGCCCATGCCCTCATTATCTGACGTGCGGCAAGTTATAGCTCTTTATGCTGTCTTACCTCTGGGTTCCCAAGTAGTCCATGAGAAAGCCCCTCTGGTGAAGGCCATCCTCCTGGTGGGTCCGTCAGGAGTGGGGAAGAAGATGCTGGTCCATGCGATCTGTCAGGAGACAGGAGCCAACCTTTTTGATCTGTCCTCAGCAAACTTGGTGGGGAAGTACCCGGGCAAGAACGGCCTGACAATGATGCTCCATATGGTATTTAAGgttgccagattgatgCAGCCCTCAGTGGTGTGGATCGGAGATgcagaaaaaatgttttacaagaAAGTtccaaaagaggaaaaagagCTGGATCCAAAGCGACTGAAGAAAGATTTACCAAAAATCCTCAAAGGCATGAAAGGTGAAGACCGGGTTCTCATCGTGGGAACAACAAACAGCCCCGTCAATGCTGACTTAAAATCACTGTGCAAGGTTTATACCAAGATCATCCTCATACCACGCCCAGACTACGCCTCCAGATACGTTATGTGGAAGCAGCTGATACAGCGCAATGGTGGAGTGGTGACCAGCACCCTGGACATCAGCTCCCTGGCCAAGATCTCAGATGGCTACACCCAGGGTCACATGGTGCAGGTGATCCGGAGCGTCCTGACAGAGCGGCGCATCCAGCTGTTGGCTAAACGGCCGCTGGTCGCGACTGAATTCGTATCTCCTCTGGCCAGAATCGACCCCGTGTTCCAGGATGAAGAGGAGGCTCTTAAAgccTGGTATGCTAAGACTCCTCTTGGTAAGAAGAGAATCAAAGCCGCCTCAGGGACAGTGGAGGACGAAGCCCCAAAGAAAGGAGGGAAAAAtggaaagaagaaaggaaagaagtaacgctgtgtttctgtgttgatTCAACCAAAGACAAGTTCTCGATCTCTGGCTCTGGAAAATAAACCTGTAACTTGA

Function

NR:

description
PREDICTED: IQ and AAA domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670248.1 True 2968 mRNA 0.51 19 14015464 14031107

Neighbor

gene id symbol gene type direction distance location
LOC111192617 NA coding downstream 7707 14000804 ~ 14007757 (-)
LOC103027544 LOC108442360 coding downstream 20105 13913721 ~ 13995359 (-)
dmap1 dmap1,LOC107750524,LOC107758267,LOC107585836,LOC107699933,LOC107548533 coding downstream 104173 13902215 ~ 13911291 (-)
LOC103027869 LOC108442365 coding downstream 161193 13790533 ~ 13854271 (-)
LOC103024702 guk1b,LOC103024702,LOC107585833,LOC107758268,LOC107657930,LOC107750510,LOC108442369,LOC105895130,LOC105895024 coding downstream 230135 13770161 ~ 13785329 (-)
mindy4 NA coding upstream 45657 14076764 ~ 14092865 (-)
nexn nexn coding upstream 64226 14095333 ~ 14121329 (-)
tmem47 tmem47 coding upstream 135562 14166669 ~ 14187067 (-)
cpox cpox,LOC102782768 coding upstream 180483 14211590 ~ 14221513 (-)
LOC103033235 NA coding upstream 223961 14255068 ~ 14276663 (-)
G52024 NA non-coding downstream 1456 14012373 ~ 14014008 (-)
G51992 NA non-coding downstream 129905 13879399 ~ 13885559 (-)
G51958 NA non-coding downstream 375345 13639888 ~ 13640119 (-)
G51941 NA non-coding downstream 525265 13487919 ~ 13490199 (-)
G51932 NA non-coding downstream 580919 13433901 ~ 13434545 (-)
LOC111192619 LOC108442363 non-coding upstream 7233 14038340 ~ 14063185 (-)
G52064 NA non-coding upstream 67904 14099011 ~ 14100478 (-)
G52127 NA non-coding upstream 128669 14159776 ~ 14160951 (-)
G52132 NA non-coding upstream 171059 14202166 ~ 14215562 (-)
G52131 NA non-coding upstream 174011 14205118 ~ 14215862 (-)
G51960 glis1 other downstream 351350 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 422517 13565998 ~ 13592947 (-)
smim24 NA other downstream 691781 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2133523 11831802 ~ 11881941 (-)
G51346 NA other downstream 2811041 11204054 ~ 11204423 (-)
G52161 NA other upstream 377829 14408936 ~ 14411611 (-)
G52299 NA other upstream 1045189 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2130533 16161640 ~ 16219847 (-)
G52493 NA other upstream 2151628 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 2195129 16226236 ~ 16227174 (-)

Expression


Co-expression Network