LOC103024300 (mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376)


Basic Information

Item Value
gene id LOC103024300
gene name mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16822247 ~ 16928239 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670299.1
TGCCCCTGAATCTGTATATCTGATCCTCAGTATGTTAGCTGCGCGCGCCACCGCTCTGGGAAACACGAGCCTCGCGGCGCGTGCAGGTTCCCGGGTGCGCGGAGGATAAATCGCGGGGGCGCGCGCGCACCGGCTACTCTTCTTGCAGCGCGCGGAGCTTGTGCTGCTGGTGCCGGGATTGTGTTCTGCTGGTGCTGTAAGTGGAGCTGGAGCGCGCGAGGGAGAGCGTGTGAGAGGGGTATGGGAGAGCGGACGCAGCAGTGCACAGGACAGGCAGCGGAACAGGACTCTGCGCAACGGCGCCATCCAGCAGCACCTTGAGCGCGCGCACGGGACTTTAAGGCAGCAGGGAGACACGGCGTGGGACAGCACGCGGGACAGTGGGCTCAGCGGGAcgcagcaggactaaaagcagccaaaaaaaaatgaacgcGATCGTGTTCAACAAGCTGAGCAGCCAGGTCCTGTTCGAGGACAAGGCCAGCGAGGTGGAGCGGAGCAGCAGGAACTATCTGGAGGTTCTGGACGGGCAGCACGCGGACATCCTGACCAGCAGCCAGGGCATAAAGGACAGCTCAGCTATAAGACACAGGAGACCTGGgtcTCGGCAGGGTGTTGGTAAGGTACGTCACAAGCGGCAGGCGCTGCAGGATATGGCACGACCCCTGAAACAGTGGCTTTATAAACACCGGGACAATCCGTACCCCACCAAAACCGAGAAGATCCTCCTCGCTCTCGGATCCCAGATGACCCTGGTGCaggtgtcGAACTGGTTTGCGAATGCTCGGCGGCGGTTGAAGAACACGGTTCGGCAGCCGGATCTCAGCTGGGCTCTCAGGATTAAACTCTATAATAAATACGTTCAGGGAAACGCAGAGAGACTCAGCATCAGCAGCGACGACTCCTGCTCAGacgATGGTGACCCGGGTGCTCGGACCCAGCCGGGGGAGTTCAGTAAGCCCATGTATCAGAGTGTCATCAAAAAAGAAGGTGGCGGCATGGGGGCGGGGCTTCGGGCATCCGCAGACCCCTCATTGGCCGAGGACTACGTGTCTCCGCCCAAATACAAGAGCAGCTTGCTCCACCGCTACCTGAACGACTCGCTGCGTCACGTGATGGTGACCAACGCGGTGATGGACGCCCGGAGGAGGAACCACTCGGGCTCCTTCAGCTCCAACGAATACGATGAAGACCTCTTATCTCCATCGTCCTCAGAAACAGAGGCCAACTTCGTCTATCGAGCAGAGTCTCTGGACCATGGATCAAGTAAATGTGACAACAGCATCGTCCCGAAGGAGAAAGGACGCGGTAAAGACGAGACGTACTGGCGAGAGATCAACGCAGCCATGGCCCTCACCAACCTGGCCCAGCCCAAAGACGGCGCCCCCTCTGGAACCACCAGCTGCATCATCCAGAAATCCTCCCACATAGCTGAAATCAAGACTGTCAAAGTGCCCATCCTGCACAAGTACTAGCGCCCTCTTCCTGCGGACAAGGAGACACGCCTCTTCTCGTCCGTCtggagttttaattttttaattttttaatattttgtggtACTTATGAAGTAGCaatataaaacagttttttttatatttgaagaGACGTTACAGTGCCCTGAAACGCAGCACTTCTCACGGTTTCTGGGTTTGTGCCTGTTCTGGACGCACAAGCCCTTTAAATAAGTGCTGACGAGCGACGAAGACGACGACAGTATTGCAGAACGAGACACTTTTGCAATGTTAAGTTATTTTGATACAATTTCTTTTTGTACtctttttgaagttttttttattgtatcgtGCCAAA
>XM_022670300.1
TGCCCCTGAATCTGTATATCTGATCCTCAGTATGTTAGCTGCGCGCGCCACCGCTCTGGGAAACACGAGCCTCGCGGCGCGTGCAGGTTCCCGGGTGCGCGGAGGATAAATCGCGGGGGCGCGCGCGCACCGGCTACTCTTCTTGCAGCGCGCGGAGCTTGTGCTGCTGGTGCCGGGATTGTGTTCTGCTGGTGCTGTAAGTGGAGCTGGAGCGCGCGAGGGAGAGCGTGTGAGAGGGGTATGGGAGAGCGGACGCAGCAGTGCACAGGACAGGCAGCGGAACAGGACTCTGCGCAACGGCGCCATCCAGCAGCACCTTGAGCGCGCGCACGGGACTTTAAGGCAGCAGGGAGACACGGCGTGGGACAGCACGCGGGACAGTGGGCTCAGCGGGAcgcagcaggactaaaagcagccaaaaaaaaatgaacgcGATCGTGTTCAACAAGCTGAGCAGCCAGGTCCTGTTCGAGGACAAGGCCAGCGAGGTGGAGCGGAGCAGCAGGAACTATCTGGAGGTTCTGGACGGGCAGCACGCGGACATCCTGACCAGCAGCCAGGGCATAAAGGACAGCTCAGCTATAAGACACAGGAGACCTGGgtcTCGGCAGGGTGTTGGTAAGGTACGTCACAAGCGGCAGGCGCTGCAGGATATGGCACGACCCCTGAAACAGTGGCTTTATAAACACCGGGACAATCCGTACCCCACCAAAACCGAGAAGATCCTCCTCGCTCTCGGATCCCAGATGACCCTGGTGCaggtgtcGAACTGGTTTGCGAATGCTCGGCGGCGGTTGAAGAACACGGTTCGGCAGCCGGATCTCAGCTGGGCTCTCAGGATTAAACTCTATAATAAATACGTTCAGGGAAACGCAGAGAGACTCAGCATCAGCAGCGACGACTCCTGCTCAGacgATGGTGACCCGGGTGCTCGGACCCAGCCGGGGGAGTTCAGTAAGCCCATGTATCAGAGTGTCATCAAAAAAGAAGGTGGCGGCATGGGGGCGGGGCTTCGGGCATCCGCAGACCCCTCATTGGCCGAGGACTACGTGTCTCCGCCCAAATACAAGAGCAGCTTGCTCCACCGCTACCTGAACGACTCGCTGCGTCACGTGATGGTGACCAACGCGGTGATGGACGCCCGGAGGAGGAACCACTCGGGCTCCTTCAGCTCCAACGAATACGATGAAGACCTCTTATCTCCATCGTCCTCAGAAACAGAGGCCAACTTCGTCTATCGAGCAGAGTCTCTGGACCATGGATCAAGTAAATGTGACAACATCGTCCCGAAGGAGAAAGGACGCGGTAAAGACGAGACGTACTGGCGAGAGATCAACGCAGCCATGGCCCTCACCAACCTGGCCCAGCCCAAAGACGGCGCCCCCTCTGGAACCACCAGCTGCATCATCCAGAAATCCTCCCACATAGCTGAAATCAAGACTGTCAAAGTGCCCATCCTGCACAAGTACTAGCGCCCTCTTCCTGCGGACAAGGAGACACGCCTCTTCTCGTCCGTCtggagttttaattttttaattttttaatattttgtggtACTTATGAAGTAGCaatataaaacagttttttttatatttgaagaGACGTTACAGTGCCCTGAAACGCAGCACTTCTCACGGTTTCTGGGTTTGTGCCTGTTCTGGACGCACAAGCCCTTTAAATAAGTGCTGACGAGCGACGAAGACGACGACAGTATTGCAGAACGAGACACTTTTGCAATGTTAAGTTATTTTGATACAATTTCTTTTTGTACtctttttgaagttttttttattgtatcgtGCCAAA

Function

symbol description
mkx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in cell development; muscle organ development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including collagen fibril organization; regulation of gene expression; and tendon development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: homeobox protein Mohawk

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24890 MKX; homeobox protein Mohawk

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670299.1 True 1809 mRNA 0.55 7 16822247 16928239
XM_022670300.1 False 1806 mRNA 0.55 7 16822247 16928239

Neighbor

gene id symbol gene type direction distance location
LOC103032046 NA coding downstream 447906 16363613 ~ 16374341 (-)
shbg NA coding downstream 662531 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 692871 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 787151 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 849239 15919470 ~ 15973008 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 261576 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 539812 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 720212 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 740425 17668664 ~ 17669725 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding upstream 1653641 18581880 ~ 18610419 (-)
G52662 NA non-coding downstream 57057 16678087 ~ 16765190 (-)
G52676 NA non-coding downstream 61822 16759218 ~ 16760425 (-)
G52673 NA non-coding downstream 68664 16752501 ~ 16753583 (-)
G52655 NA non-coding downstream 144848 16622749 ~ 16677399 (-)
G52654 NA non-coding downstream 170675 16595171 ~ 16651572 (-)
G52722 NA non-coding upstream 102474 17030713 ~ 17077954 (-)
G52724 NA non-coding upstream 142166 17070405 ~ 17074100 (-)
G52728 NA non-coding upstream 169884 17098123 ~ 17098469 (-)
G52729 NA non-coding upstream 173994 17102233 ~ 17102466 (-)
G52759 NA non-coding upstream 229266 17157505 ~ 17157905 (-)
G52652 NA other downstream 232464 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 394634 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 465287 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 595073 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 602400 16161640 ~ 16219847 (-)
G53164 NA other upstream 1658162 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 2594463 19522702 ~ 19570378 (-)
G53382 NA other upstream 2921711 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 3693330 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 3855499 20783738 ~ 20787618 (-)

Expression


Co-expression Network