sncaip (sncaip,LOC103399731)



Basic Information


Item Value
gene id sncaip
gene name sncaip,LOC103399731
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25297056 ~ 25304115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022670386.1
TACACAGCGAAGAACATTCCAGAACTTTGTCGGAGAAATGATGCACAAGCCGAGGAAAGACAAGctccagGCATCAACTGGGGTCGAAGTGCCTCATCACACAGCGGAAGTGGAATCAAACCCACTGGAATTGCTGATGTGTACAGCAAATTCAGGCCTGTTAAAAGGGTTTCACCACTCAAACATCAACCCGAGGTTTTGGACACCGAAACTGACAGCAAGAGTCCTGGACAAAATGTAGAGGGGAACAAAGAAGAATCGTCCTCTAAAGGGCTGCAGACAGGTGACGCTCCGTGCAATGTTCAGGGCCTCAAGTCTAAAGCTATTGCTAATGGAGCACTTTTTGGAGAGCTGGAGCACTACGACCTGGACATGGATGAGATACTGGATGTGCCTTATATTAAATCCAGCCAACAAATGGCAACCCTGCCCAGAGTGGCCTCTGAGAAGCGCACCTCAGGGAGTAGTGCCGGTGATAGGTGTCTCGGCATCAAGGCATCATCCCTCAGCCACTCTGAAAGCCTGGCCGGCGGGACGCAGTACTGCGTGCTCTCGCCTGTTAACTGGCCAGACATGAGGAAGTCCAAGTCCATGGATCTCAGGGCACAGACGGTGGGATATGACCTCTCCCCAAGCTCACTGCACTGCTCCATATCAGAGGCAGGTAAACTGTTACCCAGCAGGCCCTTTCCAGACACACCAACCCATAAAGCAGGAGCTGATGCCTCTGGCAGCCAGCCTTCGATCCCTAATCAGGGAAGTGCTGCGGGAAGACTAGACAGTAGCAAGTCTTGGAGCGGACCAAGAGCATTCGGAGAATGTGATGAAGAAACCAAGAAGTCTcagaatataatcaatattgtCAGAGAGGGACAGATCTCATTGTTGCCTCACTTTGCGACTGAAAATCTGGAACTGATAAGAGACGAGGATGGGAACAATCTTCTTCACATCTCAGCAGCACAGGGCCATGCAGACTGTCTGCAGCACCTCACCTCCCTCATGGGCGAGGACTGTCTAAACGAGCGGAACAATCAGCAGCTTACACCCGCTGGTCTGGGTGTCAGGAACGGACAGCTGGAATGTGTGCGCTGGATGGTGAGTGAGACAGAGGCCATTGCAGAGCTCAGCTGCACACGAGAACACCCCAGCTTGATCCACTATGCAGCACGATATGGACAGGAAAGGATTTTACTGTGGCTTCTACAATTCATGCAAGAACAAGCCATCTCCCTGGACGAAGTGGACCAGAATGGGAACAGTGCAGTGCATGTTGCTGCTCAGTTCGGTCACCTTGGCTGCCTTCAGACTCTTGTAGAGTATGGCTCGAACGTCACCATTCAGAACCAGCAGGGGGAGAGGCCGTCCCAGTGTGCCGAGCGGCAAGGTCATACCACGTGCTCACGCTatctggtggtggtggagacCTGCATGTCTCTAGCCTCGCAGGTCGTCAAACTCACCAAACAACTCCATGAACAAACTACAGCAAGAATCGCCATCCAAAATCAAGTCCAGCTGCTTTTCCAGTCGCAGGATCCTAATGGAAGACCGCGATCACCCAGTTCACTTGTTCCTCCGGCTGAGGCTTGGCCTGAAATGACGCTGACTGCGGAGGGGACCCCCGGAAACGGGCAGTGGGTGCTGAGGCAGCGGAATGTGGAGTCGGACACAGTCCTGCGCAAGCTCCTGGGGAAGGACATCGCTGAGAGGGTGGGCTCCAAAGAGAAGCTCAGTCTGGAGTTTCAGGAAGGGGCGGTAGATGGCGCAAGTGGCTTCGCAGACTCAGGGACAGGGTCTGGCGCGGGGCAGCAGAGGAGACTGGGTGTGGTGGAGAGGCGGGAGCTGAAACTGGCCCGCCTCAAACAGATCATGCAGCGTTCACTGAGCGAGTCAGACACGGACGCGTACCCCCCGGACGAGTCCAAGCAGGCCACTGGCACCTCCAAGACAGAGAGGCCCACTCAGCTTCCCATAGCGGAGAGCGAGGAACCTGCGTCTGGGGTGCAATTACTGATGAAGAAGAATACCTCATCCTCAGAGCGCAAGTTCTCCTTCGCGCTCAGGACTTCCAAATCCATGGACGGATACAACAACCCCTCTCCCACAGACCACAGTGATATCGACCAAGAAACAAAGGCCGACCTGTCGGGGGACTCGGCCGAATTTAGCAACGGGCAAAAAGTCACCACAAGTCCAAAGAGCGCTCTCAAATCTCCCTCCTCCCGCAGGAAAACCTCACAGAACCTTAAACTCAGGGTGACTTTTGACGAAGCGCCAGTCGTCCACAAAGACGCGCAACCAGCAGAGGTGGTAAAAGGAGCTTCTGGTAAAGAGAAGTCTTCAGAATCAGGGAAAAGACCCTTCGGAACATTCCGCTCCATCATGGAAACTCTAAGCGGGAATCAGAACAGCAACAACAATAACACTCAAGCCACTTCTGCTGGCAAACACTCTGTTAGCAGTTCAGCACAAGGTCATTCTGGGAAAAAACAAGATACCAAGACCAGTCCAGGAGGTCTGTCCAAATGCAAAAACAAGACAAGTGCTGTTTAAGTGCCTTCCTGAAAGAGCAGAGCAGTGCCCTATCGTCACTTTTTCTTAAAGCGTTTAGTATAAATcgtttaaaagtgttttcaaaCTATTATTGGTAACAAAGGTCCAAGCATTCACTGACCAGAATACACTCCTGAGCATTCAGTTAGAAATCAGGCACTGGTTGCTTGTTGCATTTGAACATTGCAAGTAACTCACTGCAGTTAAATTGCAGTAATTTTAGCAGTTATTAAGTTTTCTTGGAGCCACTGTATATAATAAGATAAACGTAACTCATGGTTTCACACAGTCTCGTTCTCAGTACTGCGTTGTGTAAGTGGATCTGCTGAAGCATTTAccaacactgtgttttttttacacaaccGGTCTTATCTCCGACCAACTCTTAATTCTGTTTTAGAAACCTGAATGCAATATGAACCATATGTAAGAgattagtgattttttttgtggatctgtgtttattatttttttttaatggcatgAATGTTTATGACCACTCCATTTCATTCTGAAGCAGAACTACATGCAACATAGCAACAATACGAACCATTTCACGAGAGATGGCAATATCAGATACAGAAAGCTGTagacttcattcattcatcaagAATGTTTCCTAATTCTGATCCATAGAATTAtgattttaagtatttttaaaataaaaatgtgtataatCTGTAGTgtatttgattttctttttaaaaacaaatttatggtaatttaagtatattatgTTTGAAGGATACAACACTATTGCAACCATTGTAACGTTttaagatacaaaaaaataaaataaatgcatttaaactgt

Function


symbol description
sncaip Orthologous to human SNCAIP (synuclein alpha interacting protein).

NR:

description
PREDICTED: synphilin-1

GO: NA

KEGG:

id description
K04558 SNCAIP; synphilin-1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022670386.1 True 3370 mRNA 0.48 8 25297056 25304115

Neighbor


gene id symbol gene type direction distance location
znf438 NA coding upstream 581823 24641088 ~ 24715233 (+)
arhgap12 arhgap12 coding upstream 833891 24364844 ~ 24463165 (+)
kif5b kif5b,LOC108430866,LOC107753262 coding upstream 940392 24331622 ~ 24356664 (+)
LOC103038196 LOC108429178 coding upstream 1070222 24215123 ~ 24226834 (+)
LOC103028344 cdh18,LOC108430851,LOC107568143,LOC107654555,LOC107582195,LOC108273706 coding upstream 1344127 23754737 ~ 23952929 (+)
snx2 snx2 coding downstream 19002 25323117 ~ 25346099 (+)
prdm6 prdm6 coding downstream 94868 25398983 ~ 25441210 (+)
nudt12 nudt12 coding downstream 218860 25522975 ~ 25531959 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding downstream 298286 25602401 ~ 25612117 (+)
LOC103036292 LOC103036292 coding downstream 321131 25625246 ~ 25633257 (+)
G54310 NA non-coding upstream 70958 25225117 ~ 25226098 (+)
G54306 NA non-coding upstream 160062 25136435 ~ 25136994 (+)
G54303 NA non-coding upstream 198532 25098267 ~ 25098524 (+)
G54281 NA non-coding upstream 343225 24950612 ~ 24953831 (+)
G54280 NA non-coding upstream 353280 24943451 ~ 24943776 (+)
LOC111192642 NA non-coding downstream 53887 25358002 ~ 25378241 (+)
G54376 cep120,zgc:163014,LOC107712640 non-coding downstream 163939 25468054 ~ 25471996 (+)
LOC111192644 NA non-coding downstream 248427 25552542 ~ 25561370 (+)
trnaw-cca_1 NA non-coding downstream 260546 25564661 ~ 25564732 (+)
trnaw-cca_2 NA non-coding downstream 261127 25565242 ~ 25565313 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 188185 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1006291 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3375462 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3549976 21673574 ~ 21747080 (+)
fbxo11 fbxo11,fbxo11b,LOC108430631,LOC105896971,LOC107728720,LOC107582786,LOC107550041 other upstream 4471382 20794025 ~ 20825674 (+)
srp19 srp19 other downstream 241877 25545992 ~ 25549494 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 1232937 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1658777 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1716129 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1728720 27032835 ~ 27034938 (+)

Expression



Co-expression Network