LOC103021869


Basic Information

Item Value
gene id LOC103021869
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25637459 ~ 25640853 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670402.1
TTGGGGAAATGAACAGAAGATGCTAAGGGACAATCCAAAGCATATAAATCAAAATATGCTGACAAAGAAGttattaaatagaaataaacattttatttttggcacAAATCCACATCTGTGCAGATCCTGAACTAGCTTGGTTGAATTCCAACAGAATTCCAAGCAGTCATGCTGAAGAGGTGGTGTCTGAGCATGATGGTCCGCAGGGGGCTAGTGCTAGTGGTGACATTCTGGGTTGTAGCTCTCCTGTATTCCATGAACTGCAGACCTCGTGGAAACCAAAAGCACCAAAAGGTCAAAGGGCCAATGGATGACATGAAGTACCAGGCTTTGCTGCAGGAGCGAGAGGAGCAGTATCATCACTATTCCAAAAGCCTTGGACAGCAGATCTTCCAGTTGACGAAGGCTCTCCAAGACAGGAAAAGAAAAGTGCAGAAGTCTCTGGAACAGGCTGCTGTAATGCTACCAATGGAGTTGAAACAATTAGAGGAAAAGAGTAATTCCGAAATTGAGATGTTCTTCAAAAAGCAACTACATAACGCAGAAATCCATGAAGGCTTAAAGCTACCAAATGAACATGCACTGGTTCCATTTGAGAGCTTTTCTCTTCACAGGGTTTATCAGCTGGACACTGGGCTTGCACGACACCCTGTACAAAGCACTCTTCGTACTGACCTGGGAGGGGCTTTAGAAGCAGCCCTGCACATTCTTAATGATCCTCAAAAAAGAGACAACTCTCAATACCGTAGGATCCACTCTCCACAGGACTTCTTTGAGGGAATTTTTCGGACAGAACGAGATAAAGGAACCATATATGATCTCGCCTTCAGAGATAATTCTTCTGTGGACTTCAGGAGGCTACTTTTCTTCCGTCCATTTGCGCCATTGATGAAGGTGAAGGAAGAAATGATTGACACATCGAACATGCTAATAAATATCATTGTACCATTGTCCAACAGAGTGGAGTCATTTAGACAGTTTATGCACAATTTCAGGGAAGTTTGTCATCCACAAGTTGAAAAAGTTCATCTCACTGTGGTGTTTTTTGGAACAGAGAAAATGAATGAAGTAAGAAGAATTATAGACTCCACTGCAAGGAAAATGCGATCCAGGAACTTCACTCTTATACATCTAAATGCAAGGTTCTCCAAGGGAAAAGGCTTAGACGTGGGAGCTCGGGCCTGGAAGAAAAGCAatgctcttcttttcttctgtgATGTGGACGTACATTTTACTGCAGAGTTTCTCCACTCCTGCCGCATGAATACCCAACCTGGTAAAAGAGTCTACTTCCCCATACCGTTCAGCCAGTATAACCCAGATGTTGTCTATGGTGAAGGTAGCATACCTTCTATTGATAAACAGCTGGTAATCAGTAAAAGCACTGGATTCTGGCAAGATTTTGAATTCGGAATATTGTGTCAATATAGATCAGACTTCATCAACATAgGAGGCTTTGACCTGAGTGTAAAAACGTTAGGAAAGGAAGATCTTCACCTCTACAGAAAATATCTTCACAGTAATCTCATGGTGGTGCGTGCCCCCTCAAGAGGACTCTTTCAAATGTGGCATGAAAAACTATGTGCAGAGGATTTATCAACAgagtcatttaaaaactgcatacAGTCTAAAGCCATTAATCAGGCCTCACACAGCCAGATGGGAGAActtttatttcacaaagaaaTAGACAGTCATCTCCACAAATACAAACTCCATTAGAACATCAAGGACTGAGTGAAATGGTAAAGCTGGTATGTTTGATAACACTAcctcttttttgtgttttttttctgtttttctattttttcaggttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670402.1 True 1819 mRNA 0.41 7 25637459 25640853

Neighbor

gene id symbol gene type direction distance location
LOC103036292 LOC103036292 coding upstream 4202 25625246 ~ 25633257 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding upstream 25342 25602401 ~ 25612117 (+)
nudt12 nudt12 coding upstream 105500 25522975 ~ 25531959 (+)
prdm6 prdm6 coding upstream 196249 25398983 ~ 25441210 (+)
snx2 snx2 coding upstream 291360 25323117 ~ 25346099 (+)
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding downstream 1453 25642306 ~ 25651303 (+)
aaed1 aaed1 coding downstream 889455 26530308 ~ 26534076 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding downstream 912444 26553297 ~ 26556972 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding downstream 978036 26618889 ~ 26640868 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding downstream 1015947 26656800 ~ 26663942 (+)
trnaw-cca_39 NA non-coding upstream 38711 25598677 ~ 25598748 (+)
trnaw-cca_38 NA non-coding upstream 39544 25597844 ~ 25597915 (+)
trnaw-cca_37 NA non-coding upstream 40375 25597013 ~ 25597084 (+)
trnaw-cca_36 NA non-coding upstream 41709 25595679 ~ 25595750 (+)
trnaw-cca_35 NA non-coding upstream 42542 25594846 ~ 25594917 (+)
G54478 NA non-coding downstream 5262 25646115 ~ 25646745 (+)
G54489 NA non-coding downstream 87530 25728383 ~ 25728597 (+)
G54499 NA non-coding downstream 136241 25777094 ~ 25796977 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding downstream 174563 25815416 ~ 25815745 (+)
G54529 NA non-coding downstream 453499 26094352 ~ 26096365 (+)
srp19 srp19 other upstream 87965 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 528588 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1346694 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3715865 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3890379 21673574 ~ 21747080 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 896199 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1322039 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1379391 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1391982 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 1570449 27211302 ~ 27222867 (+)

Expression


Co-expression Network