LOC103031601 (loxhd1b,loxhd1,LOC108265797,LOC108233688)


Basic Information

Item Value
gene id LOC103031601
gene name loxhd1b,loxhd1,LOC108265797,LOC108233688
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26713060 ~ 26760226 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670414.1
GAAAAAGCAAGAGCAGTGCTCCAGATTCGGGAAAGAAACGGACCACGAAGGAGGCTGACACGGACAGTGATGCACCTGAGGTGAACAAGAGCAAGAAAAAGGGAGAAAGTGataaaaacaagaagaaaaagagcaagaaGGCAAAGGAGGAGACTGAAACAGAGGATGAAGAGGTAAGCAGAAACAGTGAGGAtgaacacaacaacaacaacaaaccaAAACCCAAGCCCAGGAAAAAAAGTGTTGAGAAGATTCCCGATGTTGTTGAAGTGACCAAGGACAGCAAAAAGGACTCGAAGAAGAACTCGTCTAGAAAAGGAAGCCAAGAAAGTGCGATGGGAGCCAAAGACAAAAAGTCCAAAGACGAAGGCAAGAAGCAGAAGAAGGCAGAAAAAGAGGAGCAAGAAGAAGAGGACGATGACGCGCcgaaaaagaaaaaggacaaGAAGGCTAAGAAAGGATCCACAGACAGCGACGATGAGGGCAAGAAAGGAAAGGGcaagaaaaagaagacaaagaatGTTGACTATGTGGAAATCTATGAGAACGAATTGAGGAATTATGAGGCAGAGAAGGTAGAGAACTATGAGGATGAATATCATAAAAAGAAGGTGTATGAAGTGGTCACCATCACTGGAGACGTAGCCGGGGCCGGCACCGATGCCAatgtctttatctctctttttggTGAATATGGAATAACTCCCAAGTTGCACCTTGCCAGCAACACTGAAAAGAGAAATCGTACTGCTTTTGAGAAAGGCAAGACGGATGTCTTTCGGATAAAAACTCACAATGTTGGGTCTCTAAAAAAGATTAGGATTGAACATGATAACACTGGTTTAAATGCAAGCTGGTTCTTGGACCGTGTGGTGGTGACAGACATGAACAGACCCCACTTGCGCTTCTACTTTGCCTGTAATAATTGGCTCAGCAAAAAGGAGGGAGATGGACTTTTTGTGCGGGACCTGCTGGGCACTGTGGACCCCTCGGATATGCCAAAATataataaatatgttGTGAGTGTATTCACTGCAGATGTCAAGGGCAGTGGCACGGATGCTGATgtattcattaatatatttgggGAAACTGGAGATACTGGTGAAAGGAGACTGGATAATGACAAAAACAATTTTGAGAGAGGAACAGAGGACAAGTTTACCATTGACGCGCCAAACTTAGGAAGAATAAGGAAGATCACCATTGGCCACAACAACAAGGGCTCCTCAGCTGGATGGTTTGTGGAAAAGGTGGTAGTGGATGACCTGGGAAACAAGGCCTTGTATGAGTTTCCTGTAAGTCGTTGGTTTGCCATAGATGAGGATGATGGGAAAATTCAAAGGGATATTCTAGTGGGAGGAAGTCAGCCAACAGGCATTGTTTACAACGTGCAAGTGGTGACAGGAAACATCAGGGGAGCTGGCACCAACTCCAAAATCCACATGATTATGCACGGCTCCAAGGGCTTAAAGAACAGTGGAAAGGTCTTTCTGGAGGGAGGCAAATTTGAACGTGCCCTCACCGACATATTTAATATAGAGATTGCTGCTCTGCTCAGCCCTCTCAGCCGTGTGACTATTGGCCATGATAATGGAGGGGTTAATCCTGGGTGGTACTGCGATAAGGTTGTAGTCTTCTGCCCATTCACTGGGATTGAGCAGACCTTCCCTTGTTGTAGGTGGCTGGATGAGGATGAGGGAGATGGACTGATTGAGAGAGAACTGTATGAGATGGTCTCACTGCGGCAAAAAAGACAGAAGAAGCATCCATGGTCTCTTTGGTTATGGACGTCTGATCTTCCTGGAGCCGGAACGGACGCCTCTATCCTCTTTCAGATCTATGGAGACAAGGGCAAGTCAGATGAAATGAAGTTGAACAACAAAACAGACAATTTTGAGCAGGGTCAGCTTGACAAGTTTATGATTGAACTGCCTGACCTTGGAAAGTTGAGAAAGTTGCGAATCTGGCATGAGAAGAGAAATCCATTCGCAGGCTGGCATCTCGGCCGGGTGACGCTAATGAAGACATTAACGAAGGAAAATTTTAAATTCCCCTGTGAACGCTGGCTAGATACAAATGAAGATGATAACGAAGtggtcagggagcttcctgctATGGGGGATCTTATTGAAGAGCCACTGGCAGtcatAAAATATCGGGTTACAGTCTACACTGGAACTGTCGGTGGAAGTGGGACCGATGCCTCAGTCTTCCTGTGCCTGATTGGTGATTTAGGGGACACAGGTGACCGGGCCTTGATCAACTGCAAGAACAATGTGAACAAGTTCGAGAAGGGCAATGCTGATGAATTTATAATTGAGGCCGTGTCAATTGGGCAGGTGCGCAGGGTACGCATTGGCCACGATGGGAGAGGAGGAGGTTGTGGTTGGTTTCTAGACAAAGTCATGGTTAGAGAGGAAGGTCAGACTGAGTCTCAAGCTGTAGAGTTCCCATGTAACAGATGGCTTGACCGCAATGAGGACGATGGTCAGATTGTTCGGGAGTTAGTTCCATTCGCTGATGGTCAAAGACTATTTAATGTCAGCTATCATGTCGCAGTGAAGACAGGCAACATCAGCGGCGGCAGCTCAGACTCCAAGGTCTTTGTAAAGTTATATGGAGAGAAGGGTGACACCAGTCGAATGATGCTGGTCGTCTCCGACAATAACCTGGGGAACTACTTTGAAACCGGGAGAGTGGATATCTTCACCGTTGACACATATGACATTGGAcaaATCAACCGTCTGATGATAGGCCACACCAACGAAGGCATGAGGGCAGGCTGGTTTCTGGACAGTGTGCAGATCATGGTGCCCAATCACGGAAATCACtacatgtttcccagccatcgCTGGCTTTCCGAAGATGAGGCTGACGGCAAAACTGAAGTGGAGATCTACCCCAGTGAAATACTGGACCTGGAAGAATtGAAAAACTATGAGATCACAGTGTATACGGGTGACGTGTTTGCAGCAGGAACAAATGCCAATATTTATATCCAAATATATGGAGATCAAGGGAAGACTGAAGTTATCACTTTGAAAAGCAGGTCCAATAACTTCGAAAGAGGGACAAGTGATACATTCAAGATCGAGGCTAAAGATGTGGGGAGCATCTTTAAAGTCCGCATTGGTCACGATGGAACAGGAATTGGTGCTGGATGGTTTCTGGAGAAAGTAGAGCTAAAGTACCTGATTATGGCCCTggtgaagaaagagaagaaagaggacaagaagaaaaacaaaaagaagaaaaaaaaagatgaggaCGAGGATGAGGAAGGCGAGGAGGTGATGCAGGAGGTGGTGAAGACACTTACCTTCCCTTGTGAGCGCTGGCTGGCTGACGATGAGGAGGACCGGGAGCTGGTAGTGGAACTTCTACCTGAGGATAATGAGGACCTGGAGGAGGTGACGTACGAGCTGAGTGTCTTTACGGGGGACATGATGGGTGTTGGGACCGATGCTCATGTTTTCATCAACATCTACGGCGAGAAAGGCGACACTGGCGAGCGCCCCCTGAAGAAATCCAACAACGTCAATAAGTTTGAGCGAGGCCAGGAAGACGTGTTCTCCATAACAGCGATTGATCTGGGGGTTTTGAAAAAGCTAAGGATCCGTCACACTAACAACCAGACCAACTCTGCCTGGTATCTGGACCGAGTGGAGATTACAGACAATAATGAAGACGTCACGTATTACTTCCCATGCAATCGCTGGCTGGCTGTGGATGAAGACGATGGGCAGATTGCCAGAGAGCTGGTGCCTGTAGATGAGGCCTTTATGAAGAAGGATGAAGACGAGGAAGGCTCAGGAGCAACTCTAGGGCTTGAGCAGAAAGCCATGTCAACCACATACACACTGCGGATCAAGACTGGAGAGAAGAAATATGCTGGAACCGATGCCAATGtttttgccattctttttggaGAGTATGATGACACAGGAACAATTAACCTAAAGGCATGTAAATCTCATAAGAATAAGTTCGAGCAAGGAATGATTGATGAGTTCACAGTGGAAGCCGTTGATCTGGGAGAACTTCAGAAGATCAGGATTGGGCATGACAATAAAGGTGGATCATCTGGTTGGTTCTTGGACTGGGTGGAGATTAATGCACCTTCACAGGGTCAGAAACTCCGTTTCCCATGTGGCCGCTGGCTGGATAAGGGAGAAGATGATGGAGCCATAGTCAGAGACTTGTATCCAGCTGAACTGCAGACTGAGGTTTACACTCCATtTGTGCCTTACGAAATCTCCATCTTCACCAGCGATGTCTTTGGAGCGGGGACGGACGCAGATGTCTTTATTGTTCTTTATGGACAGAACAGTGTTTGCACTCAGCAGAAGTATCTCTGTGTGAATAAAAGAGAAAGGCGCATGTACTTTGAGAGGGGAGCAGAGGACATGTTTATTGTGGAGCTGGAAGACATAGGTGACATCATTGAGAAGATTCGCATTGGACATGACAACAGTGGCACAAACCCTGGATGGCATCTAGACCGAGTGGAAATTAGAAGACTTTTAAGGAAAGGAAAGGGCTCAGAGACTACCATCTTTCCCTGTGAGCGATGGCTGGCTAAGTCTGAAGATGATGGTGAGACGGTGAGAGAGCTGGTGCCTTCAGATATCATCACTGAGAAGCTCCTGAGAGACGGAACATTAAAGACCACAGAGACAGAGGTGGATGATGCACTGGAGACTCACACATATAAAGTATCTGTGAGAACAGGCGACATGCACGGGGCAGGTACGGATGCCAACGTGTTCCTAACCATGTACGGAGATCTTGGTGATACAGGAGAGCGCAAGCTCAGCAAATCGGAGACCGGCAAAAACAAGTTTGAGAGAGGAGCAGTTGATAAGTTCAGCATTGAAGCCGTGGACCTGGGTCAGATCTTTAAAATCAAAGTACGGCATGACAATTCTATGCTAGGTGCAGACTGGTACTTGGACCAGGTAGAAGTTGTAGATATCGACACAGAGGAGGTCTACATGTTCTTATGTGAGAGGTGGCTGTCGAAAAAGAAGGAAGATAAACGGATCGAGAGAACATTTTTTGTGAAGGGTTATGAAGGTGAACGAAATCCCCAAAACACGAAGAAAGCTGTACAAAACTCGAAATCAGGTCTGGATAGCAAtatgaacaaaaagaaaaagaagaagaaagcagCGGTTGTAGAAGAGGGTCCAGTGATTCCATACCACTTCACGATATCAACGGGGGCAGATCGGGATGCCAGTACCACCAGTCGGGTGTATGTAATCATAATGGGTCCGGGCGATCTGGAAACAGAGCGGCTCTGGCTCGACCTTCCTGAAGGAAAGAAGTGCTTTGCTTCTGATAGTATGGAGAACTTTGAAAGCTACGGTTTGGATGTAGGAGAAATTAAGAGGGTAGAGTTAGGCCACAATGGAGCCACTCCAGAGAGTTGCTGGCTGGTCGATGAGTTGTCTGTGGCAGTGCCAACCAAGGGCATTAAGTACATATTTCCATGCAAGTGTTGGCTTGCCAAAGACAGAGGAGATGGTCTTACAGCGAGAGTCTTTAACATTCTTGATGCCACTACTATCAGTATCATTCAAAAGGTCATCTATGAGATCACTGTTGTTACAGGAGATACCCAATATGCAGGGACAGATACCAATATATTCATAACTGTGTTTGGGGCCAACGGAACTACCGAGGAGATCCTGCTACAGAAGAATGGAGACAGGTTTGAGAGAGATCAGGAGGACACGTTTAACCTGGAGGTTGATGATATCGCTCCTCTTAAAAAGTTAAGAGTTCGCATTGACGGGACAGGAAGTCGACCCGATTGGTTCCTTGACAAGATTATCTTGCGGAACCTGAGTACAGAAGAAGTGTCAGTTTTCACCTATGAGAACTGGCTGTCCAAAACTAAAGGGCCCAGAAGGACAAAGGTGTGTGAGCTCCCCGCTGTGGTGGATGACGAGGAGATGGTGGAGAAAACCACCTACATCATTCAGGTTAAAACCAGTGACATCGCTGGTGCGGGCACAGACGCTAACGTGTTCCTGATTGTGTTTGGGGAGAACGGAGACACTGGCACTTTAGCACTGAAGGAGAGCACCAACAGGAACAAATTTGAGCGCAACCAAGCGGATGTGTTCCGCTTTAGCGACATCCTCAGCCTGGGAGAGCTTTCTAAAGTCCGAGTGTGGCATGACAACAAGGGTCCTGGTCCTGGTTGGCATTTAGAAGGCATTGATGTAAAAGACGATATCATGAATGAAACCTTCCGCTTCCCTTGTGACCGCTGGCTAGCCAAAAATGAGGACGATGGTCAAATAATGAGGGAGCTGGCATGTGCCAACAATGATGTTCTAGACCTTAGTGACAAGACAAaatatgAAATTGACGTTACAACAGCCAGCTCTGACGGAGCAGAGACGAAGGAGAATGTGTGGATAGTGCTTGAGGGGAAGCGAGCCCGTTCAAAGGAGTTTATGATGGAGAACTCTTCAAAGAAAAAGAGATTCTTGCGGGGTGCAACGGATTCGTTTGAGTTTTCCTCCAAAACTCTGGGAGAAATTGTCGGCATCACTTTGGGCcatttaacaaaagaaaagaaagtgaaGAATGAGTCGTACTGGCATGTTCATGAAGTGGTGGTGACTGAAAAAGAACTGCGGAATAAGTACGTTTTCCACTGCGATGCCCGCATCCCTCTATCTGCAAAGAAAGACGAGTACATGACCTTCGAGTGCAGCAAGTCCATTGAGAGCTTCGCCAGTAAAGTCCGCAGCCTGGTCCCCGTCAAATACGAGATCATCGTCATCACCGGTGATGTGAAAGGAGCAGGGACAGATGCCAACGTCTTCGTCACCATCTACGGAGTCAACGGAGACTCCGGGAAGCGGGCGCTGAAGCAGAAGTTCAGGAACCTGTTCGAGAGAGGCCGCACCGACCGCTTCGTCCTGGAGATGCTGGACTTGGGTGACCTGCTGAGAGTGAAAGTGGAGCACGACAACACCAGCCAAACACCTGGCTGGTACCTGGAGTGTGTGGAGATTACAAACACTGCCAACTGGGTGACCACTATCTTCGTCTGTGGAAAGTGGTTGGACACGGCTAAAGGGGATGGAAAAATTGAAAGGGTTTTGTACCCAAAGTACTGACTGACACTCACacttttttattcagatttgtTTACGCAGGTCAGTACTTTTGtttcatttcagtttaaaacagacaaatgagttgtatttgtactttttttaaacagcaatgAAAGCCAATGTTTGCGAGAAAGCAAAACAGCTGTTTTATCTAAATAACGCACAGACTAATAAaccattttgaagcattttaaacattttatttgaaaaacacatacaaaaaggTCATATACAagacaagaaattaaaaaagaaagaacagttTGGGTTAAGCTATGCAACTTTTTGCATCATTagtaataaatacagtacaaaatcCACCAAAAGTGAATCtaagtgttttttcttcttttttttttacgcaatATACACTTAATCTAGTTATCGTACATGATGATCATCGagctattgcttaaatattgtcaatacatattttttttctacttgactataaaatattaatgtcaGAAAACATTGCGCAGTAACAGCAACAGCAGTGTCTTATACAAAGATAGCCACTTCCCTTTCACTGGCAggttattcaatattttttttttttacgtcagcagcagaaaaaacatcagaaagatttatggtaaaatatttttaacatatctaTCCATTCTCATATGTATATTAAAACCTGAGAAAGACATGCATTATAGAGCTTGTGCTTTAGGATCTACTGTTCATTCTGTTTTGCGAAACATAATACTATTGCTGTATGTCCAAAAATCTGCTAGGGTGGTGGAGCAAAGAATAAAGACTTTAAGGCTGGTGAGGCAAATCATAGGACATGGCATGTCTTCACTtgtaccttttctttttttttttttttttttttgtttgcaaataAACAGAGAATCCCAAGTGTTCGTTAACCAAGAAAGAACTCGTTCTAATGGCCTGCGTCAAAATCCCATTTGGCACAGACAAAATGAAGCAGGAAAGTGTTTCGCCATCTTCGTCTGATTTTTGCGTGTAGTGTTTCAACGTTTTGCACTTTTCAAACAATATCAGTGGCTCGCAGCAAAAATCTATTTGTGTGATTCTTTTTCCTCAAGAGAAAGGTCCAATaacgattaaaaaaaatgtttttgtccaCATCTTTGTTAAAGTATCAaaagaaatatattaatgaCCATCTTAAATGCACTACAATTAGCGATAGATACATCTTCAGACAGTCGTTTAGCTCCAGACCCTGTTACGAAgaaccacacacaaaaaatatagtaaGGTAACAAATGGGAGGGGCTAGAAAGGGGGTGGAGTCACGTGGGCATCACAAACAGAAGTGTAAAACTGATGTGATCGTTTTCTATGTAATATAAATCCAGCTAATGTATAGCATTAGGGCGACTCATGGCTAATCACAGTACACCTCACTCTGCACTAAGCTGTGTTTTATTTccaccttttttaaaaaaggaaaacaagaaaaaaaaaaa

Function

symbol description
loxhd1b Predicted to enable catalase activity and heme binding activity. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy; autosomal recessive nonsyndromic deafness 77; and orofacial cleft. Orthologous to human LOXHD1 (lipoxygenase homology PLAT domains 1).
loxhd1 Involved in sensory perception of sound. Predicted to be located in stereocilium. Implicated in Fuchs' endothelial dystrophy; autosomal recessive nonsyndromic deafness 77; and orofacial cleft.

NR:

description
lipoxygenase homology domain-containing protein 1

GO: NA

KEGG:

id description
K24822 LOXHD1; lipoxygenase homology domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670414.1 True 8596 mRNA 0.45 42 26713060 26760226

Neighbor

gene id symbol gene type direction distance location
LOC103025471 LOC103025471,LOC108430308 coding upstream 11451 26691485 ~ 26701609 (+)
mrps27 mrps27 coding upstream 32743 26671956 ~ 26680317 (+)
LOC103026093 LOC108430334,LOC107726882,LOC107704577,LOC100704522 coding upstream 49118 26656800 ~ 26663942 (+)
LOC103044252 smyd1b,LOC108430330,LOC108265070,LOC107569675,LOC107712675 coding upstream 72192 26618889 ~ 26640868 (+)
znf367 znf367,LOC107726881,LOC107704585,LOC107568105 coding upstream 156088 26553297 ~ 26556972 (+)
LOC103031292 ppp2r2aa,LOC108430337,LOC107671018,LOC107713030,LOC107699615,LOC106585558 coding downstream 23994 26784220 ~ 26796027 (+)
LOC103024632 bnip3la,LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107671016 coding downstream 37085 26797311 ~ 26810688 (+)
LOC103024323 dpysl2a,dpysl2b,dpysl2,LOC108430340,LOC108266046,LOC107713031,LOC108277094,LOC108427246,LOC107678023 coding downstream 59355 26819581 ~ 26861864 (+)
LOC103022969 LOC108430342 coding downstream 214706 26974932 ~ 27018977 (+)
ciao1 ciao1,LOC106579887,LOC107714582 coding downstream 275898 27036124 ~ 27041538 (+)
G54614 NA non-coding upstream 31726 26681094 ~ 26681334 (+)
G54611 NA non-coding upstream 31982 26680631 ~ 26681078 (+)
G54560 LOC103043953,LOC107704576,LOC108430333,LOC107573351,LOC107726869,LOC107579792 non-coding upstream 69307 26641697 ~ 26643753 (+)
G54529 NA non-coding upstream 616695 26094352 ~ 26096365 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding upstream 897315 25815416 ~ 25815745 (+)
G54673 NA non-coding downstream 175704 26935930 ~ 26968187 (+)
G54680 NA non-coding downstream 185586 26945812 ~ 26946875 (+)
G54683 NA non-coding downstream 209137 26969363 ~ 26970882 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding downstream 258835 27019061 ~ 27020194 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding downstream 285920 27046146 ~ 27049083 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 161490 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1163566 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 1604189 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 2422295 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 4791466 21919225 ~ 21921594 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 202666 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 260018 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 272609 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 451076 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 903556 27663782 ~ 27668662 (+)

Expression


Co-expression Network