LOC103037168 (LOC108412740)


Basic Information

Item Value
gene id LOC103037168
gene name LOC108412740
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28304328 ~ 28313589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670449.1
TTGGAGGGTGATTTCAGCAGgaagacgaaaaaaaaaacagagaaaaacgcCCGACAGAGCTGAGATCATCTGtcaacagagaaacagacacagacaatAAATAAGATGTCTGTAAGTGACGAGCTGCCGGATATGGACAGCGCAGAGCTGATGGGACTTCTGTTCCAGGATGATGACCCAGGGCCTTCAGACCTGCTCTTCACAGATGGAAATAACTTTATTGATGACCTGCTTTCTGAGCAGGATATGCTGAGTGCGATGGACACAGAGGACTTCCTCAGCAGTCTGCTGTGTGAGGATGATGACGGTCTGGCTGCTCCATGTGTGTCTCACTCTCCACTGGGCAGCGACAGCGGGATTTCAGATGATACGACACCCCCACACTGTCCAAGCCCCCACAGTGAGACTGACACTGTCCCCAGCCCAATCTCCACTGAGCCGTCCCCACTGCCCGAGTGTGTGACAGAGAGCTTTGAGGCACAGGTGGTTCAGAATGACCACTGCTACTCACTACAACAGGATGTGTTCACCCTGCAGACTGTCCGCACCGAGAACCCCGACACTGACGTCTTCATTAATCTCGATGACATGGAAGAAAACATGGATGACAGTCTTTCAGATGAACTGCCCTGCTCACTCCTTATCGAGGATTCCACACAGAACAAACCAGATCAGCCGTTCCAGTTTAAGGAGATTGTGTTGACTGATGAAGAGAAACGGCTTTTGGCAAAGGAGGGCGTGACCATACCCACCCATATGCCTCTTACGAAGGCTGAGGAAAGAACTCTAAAGAGAGTGAGAAGGAAGATCCGAAACAAGCAGTCAGCTCAGGAGAGCCGCAAGAAGAAGAAAGTGTACATGGATGGCCTGGAGAACAGGGTGGCGGTATGCACAGCTCATAACCAGGAGCTACAGAAGAAGGTCCAAATGCTCCAAAAACAGAACATATCTCTAATCGAACAGCTGAAGAAGCTGCAGGCGATGGTGAAGATGTCCACCATGAAGACCACCACGACCAGCACCTGTGTGATGGTATTCTTGCTGTCATTCTGTTTGATCATCTTTCCTTCCATCAATCCGTTTAGCAGCTCTGGTCAAAAGGATCTGTATGCTACTTCTACAGGAAGAATGTCCCGGGCCCTCCGCTCCTACCCTCTAATGTCTTCTAATGAAGAACCTGTCAGCACCCCGAAAGAAGCAGTAGAAGAGGAGCCTCTCCTCGTAGCCACAGTGGAAAACAGCCCGATGCTGCTCACTGGTGGCCAAAACCACACTCCTGATTACCACAAGGTGGAACAGTCGGAATCTGAATCCGGTGTCAACAGCAACTCTTCCTCCGACTTTCCTGCCGCACCTCAGTCTGACCTCCAGCCAGCGGGGGCACTCTCAGAGGCACACAGGGACTCATCAGCACCGCCAGTGGTTTATGATGGGCAGAGTAAAGCGAAGGAGAACTGGATTGGACAGAAACCCACGTCTGTTATTATACAGCAGCATCGCTCTGATGAGATGTAGAAAACACACATGcaaaaaagggacaataatttttttttatttgctggtgaattaaacctttaaatccTGGTCTCGGGACTAAATATGAGATGCTGATGGTTGATATTTCAccattaaacttaaacttatttAGTCCAGACTTGGGCTTAATATGGTTTTATGAAACTGACTGTTGATCTACTGTAAGATAAAGGggcttcttttctctctcattttctctttctctcattttgccCTTTCTTACACTGAACTACTGCTCTCTGAAGTCTTTAAAGCACTTTGTTTTCCGTATCCAACCTTTTAAGGACATtgaacctcacacacacacacagagacttgTTCCCAAGACTGGGTTTTCCACTGGAAGCTGGAAAGAGATTAACTGATGGCCATTTTCTGATTGCGTCCAATATTAGCATGACTCAGCGGATGtgataatgtgtatatatgtagtaAACTGAGCCATTGCGGGGCATTTGGCTGCATAGTAGCTTcatattttgctattttacCCCCCCTTGTAGCAAGGGAGCTTTCTCCAGTCTGTCCGTTAGTGTGTTCTTCCATAGATACTATTGATTCATTGAACAAGCTTTTTAGATCTCTGATATGTGGCAGCAGTGAGTTATGATTGTTATTCGAGCATGAGCTGTTTCTGCGTGCTGCTATGCATCAACAGCTAAGTATTAGAACAGCTGATTGGTGCATACATGGAACAAAAAGTCAAAgtgtaatgaatgaatgaataatgtaatttaagaaTCAGTCATTATTATGGTGATTTATCATGTGATATCATTGTGATTTATAGTGCAACATCAAATCTAATAGAGTAGATTCAGAGTAGGATGTATACTACCTCTTTGTCAAGCTTGTCCAATATAGTAAGAGTAACTATGCAGGAACACACCTGGAAGTCTGGGGAGGGAAATTGTAAATAAAGCTAACTGCTTTCTCACTGTAGGAATCAGATTTTAGAGGATCTTTCAGGATTATTGAATCCCCGGAATTTAGTGAACCAAAGGGAAGAACGAATTATCTGAGACAGGCATTCCTCTTCATTTTCACCTGGAATTTCCTCTTTAAAACTTTGCTGCTGTAAAATACGGCTTTCGACTTGCTTCGTACATTTCTAGAAGGATCCGAGCGTGCGCCTTCTTTATCACTTGGCTGTTTACCGTAAATGAATGACCTGCACTGGCAGTGAGGCGTTCTgttattgtaaatgttttattttaatatatttgttgttttattatgtttatcaGTGTTTGCTGTACTTTATATCGGATCTGTaggacaaaaaaatatgcactGGTTTATCTGCAAATGTAGAATGTTGATAAATTGATCTTTATGGTTCCTGTACTGTACTTGTTACTGAATAAGATCATTAAAAATAAGATCAGTTTTCTTAATTATGAA

Function

NR:

description
PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670449.1 True 2940 mRNA 0.44 11 28304328 28313589

Neighbor

gene id symbol gene type direction distance location
nim1k nim1k,LOC108412738,LOC107602863,LOC107667564,LOC107686411,LOC107599996 coding upstream 4497 28285369 ~ 28299831 (+)
znf131 znf131,LOC107600021 coding upstream 20501 28272499 ~ 28283827 (+)
ghr LOC108412734 coding upstream 56843 28212697 ~ 28247485 (+)
fbxo4 fbxo4 coding upstream 139726 28158310 ~ 28164602 (+)
c6h5orf51 cunh5orf51,si:dkey-46a10.3,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 coding upstream 146769 28153462 ~ 28157559 (+)
gadd45g gadd45g,gadd45ga,LOC108412735,LOC107724875,LOC107686412 coding downstream 6279 28319868 ~ 28322245 (+)
LOC107197569 NA coding downstream 124178 28437767 ~ 28443647 (+)
kdm2b kdm2b,kdm2ba,LOC107712479,LOC107687979 coding downstream 141343 28454932 ~ 28475661 (+)
anapc5 anapc5,LOC107687977,LOC107703168 coding downstream 179987 28493576 ~ 28501784 (+)
gpx8 gpx8 coding downstream 189763 28503352 ~ 28506229 (+)
G55061 NA non-coding upstream 2246 28299869 ~ 28302082 (+)
G55053 NA non-coding upstream 42322 28258365 ~ 28262006 (+)
G55047 NA non-coding upstream 93815 28210296 ~ 28210513 (+)
G55011 NA non-coding upstream 136816 28165171 ~ 28167512 (+)
G55004 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107667551,LOC107600019,LOC107686394 non-coding upstream 176422 28126754 ~ 28127906 (+)
G55103 NA non-coding downstream 65320 28378909 ~ 28379388 (+)
G55114 NA non-coding downstream 139924 28453513 ~ 28508501 (+)
G55115 NA non-coding downstream 157407 28470996 ~ 28482177 (+)
G55111 NA non-coding downstream 164864 28478453 ~ 28480038 (+)
G55124 NA non-coding downstream 170464 28484053 ~ 28485004 (+)
ipo11 ipo11 other upstream 365939 27814215 ~ 27938389 (+)
G54841 NA other upstream 591750 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 635666 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 1081461 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 1269390 27032835 ~ 27034938 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 332475 28646064 ~ 28656818 (+)
G55218 NA other downstream 440441 28754030 ~ 28754817 (+)
G55502 NA other downstream 2033427 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 2215273 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3607231 31920820 ~ 31924095 (+)

Expression


Co-expression Network