rsph14


Basic Information

Item Value
gene id rsph14
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 29935109 ~ 29940287 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670476.1
GCCCAGTTTTATAAAAGCTGAACTGAATTTCCCTCTTAGATTTGCTCTTGACCCCTTAAAACCGCCTAATGGGCTGTCTTCGTCATAAACCCTTACATTTTCCCTTAAATATCGAACTTATCTTCAGCTAAAAACCTTTATCTGTAGCATAAAGTTTCCCTTTGAATTATTTAAGCGACCTAAACCATTTTTAGATCAATGGGCTATTTAAACATTGTCTTCCCTTAGCGGATGTAAACTCTCGGTTTGGGACGCGCCCCGGGTGAGCCCACGGAATTTCCCTTGTTGCCAAACAACAGGTTGCGTTCAAGGCGGAGTTGCCAAGCAACGCCACTAGCAACACAAGTAAGGCTGCGCTGTGAACAGCAGTGCAGAATAAGCTCGTGAAGACAGAGAAAGGTCTCCAGAGCAGCGGATGGCTGGTAGCCGAATTTCGGAGCAGCTGCCTCCGCTTATTGACCGGAATCAGTCGCCCCTGGCGTTTGGTCAGCGCGCCCTTCCGCGGCTAGCGGCGGAACTGCAAAACCCGGAGCTGACCGTCCGTCAGGGGGCGCTAGCGGCGCTGCGAGACCTCATTCACGACCCGGAGCGAGCTTATGAGACCATTTACCACGGTTGTTTGGAGAGGTTGAAGGTGTTGCTTAAAGACGAGGACAGCTCCATCAGGACAGCAACTACTGAGGTGCTTTATCTACTGACTGCACACAGCGTAGGCAGGGAGGCAATATTGAGGGAGGATGTGGTTGGCTGTCTCTCTGAGCTGCTGGACGAGCCTGTGGATGCCTGCCGCAGAAACACACACCTAGTGCTGAAGATGATGTCCGGATTTCCTGCAGGTGTGGCGTGTATGGTGTCTCTGGGTTTGGTGCCCCGGTTAGTTATGAAGGTCGCTGCAGAGACAGAGGACATTCGAGAGCTTGTCCTGTCCACTCTGGGCTCCTGCATGCGAGTGGACACTCAGGCCGCTCAGGCTGCTCTGGCCAGTGACGTAGTGACTGTGCTGAGGGAACAACTCACACACTCATCCACCAACATCCGCAGGGAGGCCACTGCAGCCATGATAGCCATCAGtGTCCCTCCGCAGGGGAAGGTAAAGGTGTGTGAAGAGGAGGTTTTACCTGTTTTGGTCCAGTTGCTAAGTGATGAAGACCTGGAGATCAAAGCCAATGCTGCTGGGACCATTATGAACACTGCAGTCATCACCAAGGGGAAGTTCCAGTCTCTGCAGGCCGGAGCTCTGGCCCCTCTGCTGCATTTGGTGGAGTGTGAGCACAGGGCAGTGTGTGCTAATGCTCTGAGGGCCCTCACCTGCCTGGCAGAGGTTCCCAGGGCCCGGGAACAGCTGCTCCAACACCTGCCCCTCCTCCAGACACGCCTGAACCATCCAGAGCCCATCATCCAGCGAGCTTCAGCCACAGCAATACAGGTCATCTCCTGGACCCCTTGACAGGCCAGCAATCCAATCAAACTTCTGAACAGTCTGAACCCACCTTGACTAATCTGTCATGAAAGTCATTCTGgaaggaaataaaatatattataataaaaataatacagattTGGGCACCCCTGTCAAATGATTCTCTGGGTGtaaatcagtaaaataaattctgTACCACGACATATATCAACACATTGTAAAGCATCATTTCAGGAATTTTCTATCTTTACATTCTTCACACATTTATTTCAAGGCAAATTGCTTTGCACACATATGAACAGCAGATGTCACTCTAAACAGATGAAATGCTCCAGTGAGGGTATGTGCTCAGTGCTCCCAAAACAATATGGAGAATTTTTAtacacatcatttttttataaatacatattctAATTTAGGCCTGCAATGTTGAATACATATTAgaatacacaatacacatcTTTTCAAATTCATAAGTTTTCCCACAGCACATGACCACATCAGCAACAGTCCATGATCAACAGgtacaaaatattatatatttttctcttttttatatacatcACATCTACCTTTATGGATAAATCAAGAATCTCTTTCTCCAGATTTATTGATTACTTGTCATGGATATATAATCTTATATAAACCTATATTTGATTTGCAAACCTTTAATATCCAATCTGTGTACATGACCAAGGCTCCCAAATTTAATCATATGTAGGTACTTATATAGCCTAAATTACTGAAACACTGTACAAGTTGAGAAACAGCCCCAAAGTAGAATGTTTCCACTTCTATATATGAAAGTGGATAAGGCGTTCTTGGTGTCATATGCAGCATTCATCTTCCCTTTAAACATGGGGAGTCAAGTTGATGCCAAGAAGCTTAATTTTgatctcatctgaccacatcaCATTTTCACAAGCCTTCTCTGGATCATTTGGGTGAGCCTTCTTCAGTTGGAGTGCAGGATCTTAATAccttattgtagtgttatacaAAATAGTTTTCTGAATGTGCTCCCAGctcccttgagatcattaaaaAAGCTCTGCCTTTTTTCCCTTAA
>XM_022670477.1
tatatatgtgaTTTATATATACATCTGTATTTACACCATTTTACGCAGTTTACCAGTTTATTATAGTTCAATACGGTTATTTAAGGGTCTCCAGAGCAGCGGATGGCTGGTAGCCGAATTTCGGAGCAGCTGCCTCCGCTTATTGACCGGAATCAGTCGCCCCTGGCGTTTGGTCAGCGCGCCCTTCCGCGGCTAGCGGCGGAACTGCAAAACCCGGAGCTGACCGTCCGTCAGGGGGCGCTAGCGGCGCTGCGAGACCTCATTCACGACCCGGAGCGAGCTTATGAGACCATTTACCACGGTTGTTTGGAGAGGTTGAAGGTGTTGCTTAAAGACGAGGACAGCTCCATCAGGACAGCAACTACTGAGGTGCTTTATCTACTGACTGCACACAGCGTAGGCAGGGAGGCAATATTGAGGGAGGATGTGGTTGGCTGTCTCTCTGAGCTGCTGGACGAGCCTGTGGATGCCTGCCGCAGAAACACACACCTAGTGCTGAAGATGATGTCCGGATTTCCTGCAGGTGTGGCGTGTATGGTGTCTCTGGGTTTGGTGCCCCGGTTAGTTATGAAGGTCGCTGCAGAGACAGAGGACATTCGAGAGCTTGTCCTGTCCACTCTGGGCTCCTGCATGCGAGTGGACACTCAGGCCGCTCAGGCTGCTCTGGCCAGTGACGTAGTGACTGTGCTGAGGGAACAACTCACACACTCATCCACCAACATCCGCAGGGAGGCCACTGCAGCCATGATAGCCATCAGtGTCCCTCCGCAGGGGAAGGTAAAGGTGTGTGAAGAGGAGGTTTTACCTGTTTTGGTCCAGTTGCTAAGTGATGAAGACCTGGAGATCAAAGCCAATGCTGCTGGGACCATTATGAACACTGCAGTCATCACCAAGGGGAAGTTCCAGTCTCTGCAGGCCGGAGCTCTGGCCCCTCTGCTGCATTTGGTGGAGTGTGAGCACAGGGCAGTGTGTGCTAATGCTCTGAGGGCCCTCACCTGCCTGGCAGAGGTTCCCAGGGCCCGGGAACAGCTGCTCCAACACCTGCCCCTCCTCCAGACACGCCTGAACCATCCAGAGCCCATCATCCAGCGAGCTTCAGCCACAGCAATACAGGTCATCTCCTGGACCCCTTGACAGGCCAGCAATCCAATCAAACTTCTGAACAGTCTGAACCCACCTTGACTAATCTGTCATGAAAGTCATTCTGgaaggaaataaaatatattataataaaaataatacagattTGGGCACCCCTGTCAAATGATTCTCTGGGTGtaaatcagtaaaataaattctgTACCACGACATATATCAACACATTGTAAAGCATCATTTCAGGAATTTTCTATCTTTACATTCTTCACACATTTATTTCAAGGCAAATTGCTTTGCACACATATGAACAGCAGATGTCACTCTAAACAGATGAAATGCTCCAGTGAGGGTATGTGCTCAGTGCTCCCAAAACAATATGGAGAATTTTTAtacacatcatttttttataaatacatattctAATTTAGGCCTGCAATGTTGAATACATATTAgaatacacaatacacatcTTTTCAAATTCATAAGTTTTCCCACAGCACATGACCACATCAGCAACAGTCCATGATCAACAGgtacaaaatattatatatttttctcttttttatatacatcACATCTACCTTTATGGATAAATCAAGAATCTCTTTCTCCAGATTTATTGATTACTTGTCATGGATATATAATCTTATATAAACCTATATTTGATTTGCAAACCTTTAATATCCAATCTGTGTACATGACCAAGGCTCCCAAATTTAATCATATGTAGGTACTTATATAGCCTAAATTACTGAAACACTGTACAAGTTGAGAAACAGCCCCAAAGTAGAATGTTTCCACTTCTATATATGAAAGTGGATAAGGCGTTCTTGGTGTCATATGCAGCATTCATCTTCCCTTTAAACATGGGGAGTCAAGTTGATGCCAAGAAGCTTAATTTTgatctcatctgaccacatcaCATTTTCACAAGCCTTCTCTGGATCATTTGGGTGAGCCTTCTTCAGTTGGAGTGCAGGATCTTAATAccttattgtagtgttatacaAAATAGTTTTCTGAATGTGCTCCCAGctcccttgagatcattaaaaAAGCTCTGCCTTTTTTCCCTTAA

Function

NR:

description
radial spoke head 14 homolog isoform X1

GO:

id name namespace
GO:0070286 axonemal dynein complex assembly biological_process
GO:0120031 plasma membrane bounded cell projection assembly biological_process
GO:0044782 cilium organization biological_process
GO:0035082 axoneme assembly biological_process
GO:0001578 microtubule bundle formation biological_process
GO:0070925 organelle assembly biological_process
GO:0030031 cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko00730 Thiamine metabolism
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670476.1 True 2489 mRNA 0.46 7 29935109 29940287
XM_022670477.1 False 2176 mRNA 0.45 6 29935109 29939872

Neighbor

gene id symbol gene type direction distance location
LOC103022657 LOC108410872 coding downstream 40059 29856741 ~ 29895050 (-)
LOC103023281 NA coding downstream 178503 29748846 ~ 29756606 (-)
LOC103023912 LOC108410873 coding downstream 196564 29731438 ~ 29738545 (-)
LOC103024435 NA coding downstream 232453 29670367 ~ 29702656 (-)
LOC111192660 NA coding downstream 283019 29650428 ~ 29652090 (-)
LOC103021710 LOC103021710,LOC108414840,LOC108265329 coding upstream 6402 29946689 ~ 29950373 (-)
bag4 bag4,LOC102796320 coding upstream 15400 29955687 ~ 29963322 (-)
pold2 pold2,LOC107747204 coding upstream 180649 30120936 ~ 30127928 (-)
sf3a1 sf3a1,LOC107550953 coding upstream 190101 30130388 ~ 30138774 (-)
LOC103027196 slc7a4 coding upstream 278384 30218671 ~ 30231674 (-)
LOC111192661 NA non-coding downstream 81591 29844882 ~ 29853518 (-)
G55434 NA non-coding downstream 88001 29846706 ~ 29847108 (-)
G55433 NA non-coding downstream 90707 29843435 ~ 29844402 (-)
G55387 NA non-coding downstream 207342 29646044 ~ 29727767 (-)
G55336 NA non-coding downstream 409982 29524653 ~ 29525127 (-)
G55466 NA non-coding upstream 104165 30044452 ~ 30089255 (-)
G55468 LOC105889975,LOC108265152,LOC107548280 non-coding upstream 106928 30047215 ~ 30049185 (-)
G55479 NA non-coding upstream 160491 30100778 ~ 30104106 (-)
G55491 NA non-coding upstream 209864 30150151 ~ 30215590 (-)
G55550 LOC107747660 non-coding upstream 349647 30289934 ~ 30290947 (-)
LOC103046862 LOC108410878 other downstream 679 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 94356 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 1334599 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 1511154 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 1777660 28153421 ~ 28157449 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 1695194 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 1791177 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 2831740 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 3208787 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 5150443 35090730 ~ 35108420 (-)

Expression


Co-expression Network