LOC103040008


Basic Information

Item Value
gene id LOC103040008
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 30253550 ~ 30273121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670482.1
CTCCTGTACGAGTTTAGTTCCTCTACACTCATCAACATGAAGCTGTTTTTGATTCTAACCTGCGCACTTCTCCTCTCCACAGAAGCTAAAGttcagcacagAGATATCGCATTAGTCCTCTGTTCAGAGACGTTTGGAGAAAGGATTTATGGTCTTGATGGAGAGGAGAAGTGGCATGCTGATTTCAGACTGAAGAAAGGAGTGATGACGCTGCCGCAGTTCGCAGATCCGGGCTACTATCCAGAAGGAGCCTATGAGACCGCTGTTTCTGAAATAGAAGTCTGCAAATCTAACTTGGGTACAATGTTAAAAGCTTACAAAAACCCTGCAGAACCAAAGGATGCTCCTCAAAGCGCAATCTACTCTAAGAACAGAGTAGAACTGGGCTCTAAAAACACCCTCATCTGCTACATCAGTGGGTTCTACCCAGCACGCATCGGAGTGTCCTGGACCAGGAACAATGTAAATGTGACGAGTGAAGCCAGTCTGAGCAGATATTACATCACTGATGATGGAACCTTTAACCTGGTCTCTGCTCTGAGCTTCACTCCAGAGGAGGGAGATATCTACACCTGCACTGTGGAGCACGTAGCCCTGGACAGACCTCAGACCAAAACATGGGaggTGCAGGTAGAGCTGCCCGGTGTGGGAGCGTCTGTGTTCTGTGGAGTGGGTCTGGCTGTAGGGCTGCTGGGAGTCGCTGTTGGAACTTTCTTCCTCGTCAAAGGAAACAACTGTAACTGAGAGT

Function

GO: NA

KEGG:

id description
K06752 MHC2; MHC class II antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670482.1 True 748 mRNA 0.49 4 30253550 30273121

Neighbor

gene id symbol gene type direction distance location
LOC103041750 NA coding upstream 51344 30176593 ~ 30202206 (+)
LOC103042059 NA coding upstream 95654 30152436 ~ 30157896 (+)
LOC103042579 NA coding upstream 102479 30146964 ~ 30151071 (+)
ccdc157 NA coding upstream 113025 30138807 ~ 30140525 (+)
LOC103043923 NA coding upstream 132433 30100757 ~ 30121117 (+)
LOC103040742 NA coding downstream 67458 30340579 ~ 30349621 (+)
LOC103026908 NA coding downstream 341195 30614316 ~ 30625382 (+)
LOC103026612 LOC108442518 coding downstream 386605 30659726 ~ 30749916 (+)
slc15a4 slc15a4,LOC107659270 coding downstream 574786 30847907 ~ 30939711 (+)
golga1 golga1 coding downstream 1422497 31695618 ~ 31728020 (+)
G55449 sf3a1,LOC107550953,LOC107702803,LOC107575440,LOC107564451 non-coding upstream 118813 30133115 ~ 30134737 (+)
G55429 NA non-coding upstream 307827 29945437 ~ 29945723 (+)
G55428 NA non-coding upstream 308394 29944930 ~ 29945156 (+)
G55416 NA non-coding upstream 352170 29896560 ~ 29901380 (+)
G55411 NA non-coding upstream 409229 29843419 ~ 29844321 (+)
G55499 NA non-coding downstream 43279 30316400 ~ 30321692 (+)
G55507 NA non-coding downstream 153450 30426571 ~ 30430122 (+)
G55525 NA non-coding downstream 209790 30482911 ~ 30494675 (+)
G55533 NA non-coding downstream 256744 30529865 ~ 30530274 (+)
G55537 NA non-coding downstream 325491 30598612 ~ 30601438 (+)
G55218 NA other upstream 1498733 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 1596732 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 2315161 27814215 ~ 27938389 (+)
G54841 NA other upstream 2540972 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 2584888 27663782 ~ 27668662 (+)
G55502 NA other downstream 73895 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 255741 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 1647699 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 1701560 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 1786288 32059409 ~ 32150570 (+)

Expression


Co-expression Network