LOC103045861 (LOC108435653)


Basic Information

Item Value
gene id LOC103045861
gene name LOC108435653
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 30437437 ~ 30497312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670483.1
GTGTTGGGCTGAAGCTGAACTTCCACACCAACACTGAGAACTGAGTTTCCACAGCACTGAGCTGAACTTTACCttcaccatcagcagcagcagcagaacagtcaggaGGAGCCTGTCAGTGGGTGTGCATGtgtgcttatgtgtgtgtgtgtgtaactctATCACTTCTCTACACAGTGCAGTATTGCTTTACACTCTGTTCTGTGCACACTGGAATacttcaatctctctctttctctgtatttctctctctctaattctctgtttgtctctcgcCTGGTCCTATCATCCGGAGGAAGGAATTCTAACAGGCCTGTTGCTCGGAGgggaacacttttttttcctctgtcttTAGCTcttcccctctcacacacacatatacaaacacacacacacaatcagtcGCTCCTTCAGTGGACAGTCACCCACAGCAGGGGGAGCCGGTGGTGACacggagtgtgtgagagtgtgtgttgtggacCGAAGGGGACATTAAGAGGGAGACATGCTGAGAAACGGCCCAGCTGGTTCGGTCACTACCACAGCCTCTCTGGATCAGGGAAATGAGAGGGAGGTCAGGAGGCTCAGACTGACTCTGCGCACTGACGACATTCCAAATGGACAGAAAGAGAAGACCACGAAAGTCGCTTCACGCTCTGAGCAGAAGACGATGAACGGCTCCTGGATGAAGAAGAACGGTctgatgcagagagagagaccaccaGGCAGAGAATCACCTGTAGAAGATAAGCACTCCTGTGGTGTGGTGAGCAATGGTGTTGGACCCAGAGTGTTCGGGGTGGTGCAGCGGACgggagagcagcagcagcaggaagtgACTGCACGCGAGTGGCCAGTCAATACCCTGCGAGACGAGATGAGGTACATCAGAGAGGTGCGAGACTCTCTGGAGAAGGTCAGAGAGCGAATGTACGGCCAGTTTGGAGGAATGCAGCAGTCCATGCAGAAACTCTCTCAGGAGTTACGGATGGCGAACTCTCAGAAGCGATATTTGGAGGCGGAGGTGAAGACGGGCAGAGCGGCTATGGACAGTTTTGATCAGATGAACAGCAGTCTGATATCAGCCAACATCGACCTGCAGAAAGCTCTGCTGGATACCTGTAACGGGCGTGTGGGGAACAGGGAGGAGATGAAGGCTCTGCGCAGCTCTTTTGAGAAAACAGAGGAGAGACTGAGGGAGCGGGAGAGACAGCTCGCTGCTGCTCAGGCTGAAAACCAGGCACTAAAACTACAGgtggagTCGTCGCAGGAGGCCAGTGCGCGAGCGGTGAAGGAGATGAGTGCTAAACTGCAGCAGCAGTACGAGCAGCAGCTACAGGAACAGGAGAAGAAACACAGGCAGGAGATCCAAGCTCTACAGGCTCAGCTGGAGGAGTACATGAGGCGGCTGGAGGAGGCAGAGAGGAACGTGAAGCTGGCGGAGGAGAAGATCGCTGAGAGAGATCAGAGGATCAGCGAGGTGGAGCGGCTGATGAACTGCATGGCTCAGgAAAAGAGCCAGCTAACGCAGCAACTCTGTGAATGTGAGAAGCGACTGCGCTCTCTGAATGGAGAAGACCAAGTAGACTCAGGTGCTCCTAAGGCAAAGTCTGAGCAGCTACAGTTACAGAGGGAAGCTTTGGAGctaaaagagagaataaagcaCCTGAATGACATGGTGTTCTGCCAGCAGAGGAAGGTTAAGAGCATGATAGAAGAGGTGGAAACCCTGAGAGCCAGCGTGGCCCAGAAGGACATGTACATATCAGATCTGCTGGATAGGATAGCGATAGTGGAGTGTGAGAATAATGAGTTAGAAGACAAGCTGAAGTATTTTATGTCTGTACAGAGCGCCAGCGAGAATAAACCCCTCACCAGAGAGATTGGCGTGGGCTGCGACTTGCCTGTTAGCCGGCCTGACGCTCAGGCCTCTGAGACTCCGGTCCAGTCCAGGCCCGCCCCGTCAGCGCCGAGACCCCCGAGCAGACTGGACTACAGTTTACTGCGATACACACCGCTACAGTACAGCAGCATGCTCACGGGGCCATACACTCGGGACACTGCTACTAGTCCTACAGAAAACACCACACATTCAGATTCAGCCCGGCCCAGTGATGAGGGAGTgaccttattatcatcatcctcctcctcatcctccccAGAGTCAGAactgtcctcctcctccagcaagAGCCGGGCCACATCCAACCCATCCAAGATCTACACGCCGTTTATGAGGCTAATGGAGATCACAGCTAAACTGAATGTAGAATAAGCTAAAGTGAAGTGAAGGGTGCAGTGCCCTGAATCAGAcagtaaatatgtatttgtatatatttttccttttcattttgtaacataaattaaattatatccTGATCTGTGAATAACttttataaattttattttagtagcATGTGTGGatgcactttttcttttttgttattttgtttacaaatatgtatatttgGCTTTATGGTATGGAATTTGGAAAGTCTGTATTACtctgtattttacagttttatatgtttattttcagtttcCTAATGTTCTGGTTACAGCTTTGAATTACTTtcttacacaaataaataataaataatttcttgTAGTATAATGTAGTAGTATTCATATTATAACAGGCTCCCTGTAAGTCAGAGGTGTGGGGTGTAATACAGCGCTGTGATGGTCAGTAATTGGCTGGATTATTAGAAGTGTGCCAATGGCATCAGATCATTTTCACTGCCAGAAAGAAGCAAGAGACGAGGACCAAATCCCTACACAttgccactgtgtgtgtttataagggTACAACTTTAATAAAGAGATTATCTGCACAAAGTG
>XM_022670484.1
GTGTTGGGCTGAAGCTGAACTTCCACACCAACACTGAGAACTGAGTTTCCACAGCACTGAGCTGAACTTTACCttcaccatcagcagcagcagcagaacagtcaggaGGAGCCTGTCAGTGGGTGTGCATGtgtgcttatgtgtgtgtgtgtgtaactctATCACTTCTCTACACAGTGCAGTATTGCTTTACACTCTGTTCTGTGCACACTGGAATacttcaatctctctctttctctgtatttctctctctctaattctctgtttgtctctcgcCTGGTCCTATCATCCGGAGGAAGGAATTCTAACAGGCCTGTTGCTCGGAGgggaacacttttttttcctctgtcttTAGCTcttcccctctcacacacacatatacaaacacacacacacaatcagtcGCTCCTTCAGTGGACAGTCACCCACAGCAGGGGGAGCCGGTGGTGACacggagtgtgtgagagtgtgtgttgtggacCGAAGGGGACATTAAGAGGGAGACATGCTGAGAAACGGCCCAGCTGGTTCGGTCACTACCACAGCCTCTCTGGATCAGGGAAATGAGAGGGAGGTCAGGAGGCTCAGACTGACTCTGCGCACTGACGACATTCCAAATGGACAGAAAGAGAAGACCACGAAAGTCGCTTCACGCTCTGAGCAGAAGACGATGAACGGCTCCTGGATGAAGAAGAACGGTctgatgcagagagagagaccaccaGGCAGAGAATCACCTGTAGAAGATAAGCACTCCTGTGGTGTGGTGAGCAATGGTGTTGGACCCAGAGTGTTCGGGGTGGTGCAGCGGACgggagagcagcagcagcaggaagtgACTGCACGCGAGTGGCCAGTCAATACCCTGCGAGACGAGATGAGGTACATCAGAGAGGTGCGAGACTCTCTGGAGAAGGTCAGAGAGCGAATGTACGGCCAGTTTGGAGGAATGCAGCAGTCCATGCAGAAACTCTCTCAGGAGTTACGGATGGCGAACTCTCAGAAGCGATATTTGGAGGCGGAGGTGAAGACGGGCAGAGCGGCTATGGACAGTTTTGATCAGATGAACAGCAGTCTGATATCAGCCAACATCGACCTGCAGAAAGCTCTGCTGGATACCTGTAACGGGCGTGTGGGGAACAGGGAGGAGATGAAGGCTCTGCGCAGCTCTTTTGAGAAAACAGAGGAGAGACTGAGGGAGCGGGAGAGACAGCTCGCTGCTGCTCAGGCTGAAAACCAGGCACTAAAACTACAGgtggagTCGTCGCAGGAGGCCAGTGCGCGAGCGGTGAAGGAGATGAGTGCTAAACTGCAGCAGCAGTACGAGCAGCAGCTACAGGAACAGGAGAAGAAACACAGGCAGGAGATCCAAGCTCTACAGGCTCAGCTGGAGGAGTACATGAGGCGGCTGGAGGAGGCAGAGAGGAACGTGAAGCTGGCGGAGGAGAAGATCGCTGAGAGAGATCAGAGGATCAGCGAGGTGGAGCGGCTGATGAACTGCATGGCTCAGgAAAAGAGCCAGCTAACGCAGCAACTCTGTGAATGTGAGAAGCGACTGCGCTCTCTGAATGGAGAAGACCAAGTAGACTCAGGTGCTCCTAAGGCAAAGTCTGAGCAGCTACAGTTACAGAGGGAAGCTTTGGAGctaaaagagagaataaagcaCCTGAATGACATGGTGTTCTGCCAGCAGAGGAAGGTTAAGAGCATGATAGAAGAGGTGGAAACCCTGAGAGCCAGCGTGGCCCAGAAGGACATGTACATATCAGATCTGCTGGATAGGATAGCGATAGTGGAGTGTGAGAGCGCCAGCGAGAATAAACCCCTCACCAGAGAGATTGGCGTGGGCTGCGACTTGCCTGTTAGCCGGCCTGACGCTCAGGCCTCTGAGACTCCGGTCCAGTCCAGGCCCGCCCCGTCAGCGCCGAGACCCCCGAGCAGACTGGACTACAGTTTACTGCGATACACACCGCTACAGTACAGCAGCATGCTCACGGGGCCATACACTCGGGACACTGCTACTAGTCCTACAGAAAACACCACACATTCAGATTCAGCCCGGCCCAGTGATGAGGGAGTgaccttattatcatcatcctcctcctcatcctccccAGAGTCAGAactgtcctcctcctccagcaagAGCCGGGCCACATCCAACCCATCCAAGATCTACACGCCGTTTATGAGGCTAATGGAGATCACAGCTAAACTGAATGTAGAATAAGCTAAAGTGAAGTGAAGGGTGCAGTGCCCTGAATCAGAcagtaaatatgtatttgtatatatttttccttttcattttgtaacataaattaaattatatccTGATCTGTGAATAACttttataaattttattttagtagcATGTGTGGatgcactttttcttttttgttattttgtttacaaatatgtatatttgGCTTTATGGTATGGAATTTGGAAAGTCTGTATTACtctgtattttacagttttatatgtttattttcagtttcCTAATGTTCTGGTTACAGCTTTGAATTACTTtcttacacaaataaataataaataatttcttgTAGTATAATGTAGTAGTATTCATATTATAACAGGCTCCCTGTAAGTCAGAGGTGTGGGGTGTAATACAGCGCTGTGATGGTCAGTAATTGGCTGGATTATTAGAAGTGTGCCAATGGCATCAGATCATTTTCACTGCCAGAAAGAAGCAAGAGACGAGGACCAAATCCCTACACAttgccactgtgtgtgtttataagggTACAACTTTAATAAAGAGATTATCTGCACAAAGTG

Function

NR:

description
PREDICTED: myocardial zonula adherens protein-like isoform X3

GO:

id name namespace
GO:0060047 heart contraction biological_process

KEGG:

id description
K22031 MYZAP; myocardial zonula adherens protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670483.1 True 2841 mRNA 0.49 15 30437437 30497312
XM_022670484.1 False 2796 mRNA 0.49 15 30437437 30497312

Neighbor

gene id symbol gene type direction distance location
polr2m LOC108435653 coding downstream 904 30423138 ~ 30436533 (-)
LOC103027196 slc7a4 coding downstream 205763 30218671 ~ 30231674 (-)
sf3a1 sf3a1,LOC107550953 coding downstream 298663 30130388 ~ 30138774 (-)
pold2 pold2,LOC107747204 coding downstream 309509 30120936 ~ 30127928 (-)
bag4 bag4,LOC102796320 coding downstream 474115 29955687 ~ 29963322 (-)
LOC103041976 cgnl1 coding upstream 31443 30528755 ~ 30549929 (-)
glt1d1 NA coding upstream 265191 30762503 ~ 30843300 (-)
tmem132c si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC108442515 coding upstream 470300 30967612 ~ 31432651 (-)
LOC111192668 NA coding upstream 1080041 31577353 ~ 31579788 (-)
LOC103041868 NA coding upstream 1101150 31598462 ~ 31610954 (-)
G55560 NA non-coding downstream 87816 30346432 ~ 30349621 (-)
G55550 LOC107747660 non-coding downstream 146490 30289934 ~ 30290947 (-)
G55491 NA non-coding downstream 221847 30150151 ~ 30215590 (-)
G55479 NA non-coding downstream 333331 30100778 ~ 30104106 (-)
G55468 LOC105889975,LOC108265152,LOC107548280 non-coding downstream 388252 30047215 ~ 30049185 (-)
G55584 NA non-coding upstream 101679 30598991 ~ 30603604 (-)
G55589 NA non-coding upstream 121845 30619157 ~ 30621874 (-)
G55558 NA non-coding upstream 124613 30621925 ~ 30623963 (-)
G55592 NA non-coding upstream 138305 30635617 ~ 30636229 (-)
G55615 NA non-coding upstream 329740 30827052 ~ 30827583 (-)
LOC103046862 LOC108410878 other downstream 503007 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 596684 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 1836927 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 2013482 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 2279988 28153421 ~ 28157449 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 1138169 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 1234152 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 2274715 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 2651762 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 4593418 35090730 ~ 35108420 (-)

Expression


Co-expression Network