slc15a4 (slc15a4,LOC107659270)


Basic Information

Item Value
gene id slc15a4
gene name slc15a4,LOC107659270
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 30847907 ~ 30939711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670490.1
TGGGATATTATGAACCCGTGTTTGTCGGCAGTGTGCCTGTGCCGCCGTGCCGCGCTGCTACGGTTTCTTTCGGTCTCTGGCAAACTCATACCTGCTATTTGTAAggaatttaaaaagtttaaggACTTAAAATATCTCCTAAAATGTCCAGTGACATGGCAGTCGACATTAACAGCAGTCTGGTGGCCGGCTAAAGCTATTAGCTCTTCTCAGCTGAGTGTCTTAAGGGATCTACTCCTACATATTAGACATCTTGCTTTCAACCTTCACAGAAGACACCAAAGACACTGAAGACACTGAAGGCACCTCTTGGATTGGGTTCTAGCAAGTGGCGTCTCTTTTAAGAGACCCTGACTCTTCCAACCATGGCAAACCGGGACATAAACGAGAACACCCCTCTTTTGGACAGCTCCCTGTCTCTCACCAGGTCAGAGTCCATCTTCAAAGGGAGAAGATTGGCATGTGCCGCCATCCTTCTGGCAGAGTCTCTGGAGCGAATGGCCTTCTACGGCATCACCTCTAACCTTGTGCTCTTCCTAAACAGCAGCCCCTTTTACTGGGAGGCCACCATGGCCAGTCAGGCCCCTCTGGTGTTCATGGGAGTCACGTACTTGATATCTCCGTTTGGAGGCTGGCTGGCTGACGCGTTCCTTGGCAAGTTCTTGACCATAGCTTTGAGTCTGGTTCTGTATTTGACAGGGATGCTGCTGTTCCCATTTGTGGCCAGTGAAAGCTCCAGGACTGGACTGTGCGGGGAGGAGATGGCGTTTCCTGTACAGCCAGTAGAGTGCTTCAATATGAGCGGGACTCTTCCCGCTAACATTACTTGCCTTCCCAGGAAACCATACTGCGGGAATATAGTCTACATTGGACTGGTGCTGGTGGCTTTGGGAGTTGGAGCAGTGAAGTCCAACATCACTCCCTTTGGAGCAGATCAGGTTAAGGATCGTGGTCCTGAAGCAACGCGACGCTTCTTCAACTGGTTTTACTGGTGCATTAACCTTGGGGCCATCATGTCTTTGGGGGTCATCGCCTACATCCAGCAAAATATGAACTTTTGGCTGGGTTACATCATCCCTGCCGTGTGCCTGGGTGTGTCCCTGCTGGTCTTCCTGCTGGGACGCACCGTCTTCATCACCAAACCTGCGGATGGCAGTGCCTTCACCGACATGTTTAAGATTGTGGGCTCGGCCTGCTGTGGGGGACCCAGCGAACCTCACCTGCTTAGGCCCAAACCCAGCCTGCTTGATGGTGCGAAGGTGACGTATGGAGGGAAATTCCCGGAGGAGAAAGTGGATGAAGTGAAATCTTTAATGAAGATCCTGCCCGTCTTTCTGGCCCTCATTCCATACTGGACTGTCTACTTTCAGATGCAGACCACGTATTACCTACAGAGTCTTCACCTGAGAATCCCTGGATCCGAAGCTAATGTTACAGACTCTCAAACGaTGCGGTTTAAGTTCCCAGCAGCCTGGCTGACGATGTTTGACGCTGTGCTGATCCTGATGCTGATCCCACTGAAGGATAAACTTGTGGACCCCATACTGAGGCGCAGGGGGCTGCTGCCCTCCTCTCTGAAGAGGATCGCCGTCGGCATGTTCTTCGTCATGTGCTCAGCTGTCGCTGCGGgtattCTGGAGACGAAGCGATTGGAGATAGTTAATTCTCCTCATGGGGTGATCAGTCAGGTTCTGGGGGGAGTGACGTATTACGCTGCTGATCTCCCCATATGGTGGCAGATTCCTCAGTACGTCCTCATCGGCATCAGCGAAATCTTCGCCAGCATTGCAGGTCTGGAGTTTGCGTACTCTGCGGCTCCCCGCTCCATGCAGAGCGCTATAATGggccttttcttcttcttctctggaATCGGTTCCTTTGTGGGATCTGGCCTGCTCGCCTTCGTCTCTGTTAAATTCATCGGCTGGATGTCCTCCCACAAAGACTTCGGTAACATAAACGAGTGTAAGCTGAACTTCTATTTCTTCCTCCTCGCTGGAATCCAGGGCGTCacactcctcctcttcctcatcgtGTCAGTGAAGTACGACAAGCAGAGACAACGAGTCGGCAGCCATCGGCCTTCACTGTCACACTCAtgacacgtacacacacacacacacacagaggataTATGCCCCTCAGAAAACCAGGCAGTCTT
>XM_022670491.1
GGTGGGATATTATGAACCCGTGTTTGTCGGCAGTGTGCCTGTGCCGCCGTGCCGCGCTGCTACGGTTTCTTTCGGTCTCTGGCAAACTCATACCTGCTATTTGTAAggaatttaaaaagtttaaggACTTAAAATATCTCCTAAAATGTCCAGTGACATGGCAGTCGACATTAACAGCAGTCTGGTGGCCGGCTAAAGCTATTAGCTCTTCTCAGCTGAGTGTCTTAAGGGATCTACTCCTACATATTAGACATCTTGCTTTCAACCTTCACAGAAGACACCAAAGACACTGAAGACACTGAAGGCACCTCTTGGATTGGGTTCTAGCAAGTGGCGTCTCTTTTAAGAGACCCTGACTCTTCCAACCATGGCAAACCGGGACATAAACGAGAACACCCCTCTTTTGGACAGCTCCCTGTCTCTCACCAGGTCAGAGTCCATCTTCAAAGGGAGAAGATTGGCATGTGCCGCCATCCTTCTGGCAGAGTCTCTGGAGCGAATGGCCTTCTACGGCATCACCTCTAACCTTGTGCTCTTCCTAAACAGCAGCCCCTTTTACTGGGAGGCCACCATGGCCAGTCAGGCCCCTCTGGTGTTCATGGGAGTCACGTACTTGATATCTCCGTTTGGAGGCTGGCTGGCTGACGCGTTCCTTGGCAAGTTCTTGACCATAGCTTTGAGTCTGGTTCTGTATTTGACAGGGATGCTGCTGTTCCCATTTGTGGCCAGTGAAAGCTCCAGGACTGGACTGTGCGGGGAGGAGATGGCGTTTCCTGTACAGCCAGTAGAGTGCTTCAATATGAGCGGGACTCTTCCCGCTAACATTACTTGCCTTCCCAGGAAACCATACTGCGGGAATATAGTCTACATTGGACTGGTGCTGGTGGCTTTGGGAGTTGGAGCAGTGAAGTCCAACATCACTCCCTTTGGAGCAGATCAGGTTAAGGATCGTGGTCCTGAAGCAACGCGACGCTTCTTCAACTGGTTTTACTGGTGCATTAACCTTGGGGCCATCATGTCTTTGGGGGTCATCGCCTACATCCAGCAAAATATGAACTTTTGGCTGGGTTACATCATCCCTGCCGTGTGCCTGGGTGTGTCCCTGCTGGTCTTCCTGCTGGGACGCACCGTCTTCATCACCAAACCTGCGGATGGCAGTGCCTTCACCGACATGTTTAAGATTGTGGGCTCGGCCTGCTGTGGGGGACCCAGCGAACCTCACCTGCTTAGGCCCAAACCCAGCCTGCTTGATGGTGCGAAGGTGACGTATGGAGGGAAATTCCCGGAGGAGAAAGTGGATGAAGTGAAATCTTTAATGAAGATCCTGCCCGTCTTTCTGGCCCTCATTCCATACTGGACTGTCTACTTTCAGATGCAGACCACGTATTACCTACAGAGTCTTCACCTGAGAATCCCTGGATCCGAAGCTAATGTTACAGACTCTCAAACGaTGCGGTTTAAGTTCCCAGCAGCCTGGCTGACGATGTTTGACGCTGTGCTGATCCTGATGCTGATCCCACTGAAGGATAAACTTGTGGACCCCATACTGAGGCGCAGGGGGCTGCTGCCCTCCTCTCTGAAGAGGATCGCCGTCGGCATGTTCTTCGTCATGTGCTCAGCTGTCGCTGCGGgtattCTGGAGACGAAGCGATTGGAGATAGTTAATTCTCCTCATGGGGTGATCAGTCAGGTTCTGGGGGGAGTGACGTATTACGCTGCTGATCTCCCCATATGGTGGCAGATTCCTCAGTACGTCCTCATCGGCATCAGCGAAATCTTCGCCAGCATTGCAGGTCTGGAGTTTGCGTACTCTGCGGCTCCCCGCTCCATGCAGAGCGCTATAATGggccttttcttcttcttctctggaATCGGTTCCTTTGTGGGATCTGGCCTGCTCGCCTTCGTCTCTGTTAAATTCATCGGCTGGATGTCCTCCCACAAAGACTTCGGCGAAACACGGCTGAAAATCTGTGACGGCCGCCTTCTTCCTGAGGGAAGTGCCAGCAATCTCTCCCCGAGAGCGAGTGTGTCGGAGTGATATATCTCCTTTGAGCGGACGTTCTTTACGGCCACGGCTGCAAAGCAGCTCGCTCGCTGGGAAGAAAACCCATCAACACGGGGAAAGCACGAGGGGTTcgagaaaagtgtgtgtgtttgtgtgtatgt

Function

symbol description
slc15a4 Predicted to enable symporter activity. Predicted to act upstream of or within oligopeptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; immature eye; nervous system; periderm; and yolk syncytial layer. Orthologous to several human genes including SLC15A4 (solute carrier family 15 member 4).

NR:

description
solute carrier family 15 member 4-like

GO:

id name namespace
GO:0006857 oligopeptide transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14638 SLC15A3_4, PHT; solute carrier family 15 (peptide/histidine transporter), member 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670490.1 False 2161 mRNA 0.52 9 30847909 30939711
XM_022670491.1 True 2169 mRNA 0.52 9 30847907 30931517

Neighbor

gene id symbol gene type direction distance location
LOC103026612 LOC108442518 coding upstream 97991 30659726 ~ 30749916 (+)
LOC103026908 NA coding upstream 222525 30614316 ~ 30625382 (+)
LOC103040742 NA coding upstream 498286 30340579 ~ 30349621 (+)
LOC103040008 NA coding upstream 574786 30253550 ~ 30273121 (+)
LOC103041750 NA coding upstream 645701 30176593 ~ 30202206 (+)
golga1 golga1 coding downstream 755907 31695618 ~ 31728020 (+)
pop5 pop5 coding downstream 887706 31827417 ~ 31830620 (+)
rnf10 rnf10 coding downstream 891643 31831354 ~ 31843104 (+)
mak16 mak16 coding downstream 917715 31857426 ~ 31863709 (+)
LOC103046271 NA coding downstream 927443 31867154 ~ 31869244 (+)
G55606 NA non-coding upstream 4562 30777915 ~ 30843345 (+)
G55605 NA non-coding upstream 86955 30759802 ~ 30760952 (+)
G55591 NA non-coding upstream 211709 30635584 ~ 30636198 (+)
G55537 NA non-coding upstream 246469 30598612 ~ 30601438 (+)
G55533 NA non-coding upstream 317633 30529865 ~ 30530274 (+)
G55698 NA non-coding downstream 529003 31468714 ~ 31469001 (+)
LOC111192664 NA non-coding downstream 535966 31475677 ~ 31477328 (+)
LOC111192665 NA non-coding downstream 537860 31477571 ~ 31486156 (+)
LOC111192667 NA non-coding downstream 579379 31519090 ~ 31548693 (+)
LOC111192731 NA non-coding downstream 621624 31561335 ~ 31566754 (+)
G55502 NA other upstream 222861 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 297846 30528862 ~ 30550061 (+)
G55218 NA other upstream 2093090 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 2191089 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 2909518 27814215 ~ 27938389 (+)
G55831 LOC107691557,LOC108411168 other downstream 981109 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 1034970 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 1119698 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 1243366 32183077 ~ 32217411 (+)
G56160 NA other downstream 2418503 33358214 ~ 33366012 (+)

Expression


Co-expression Network