LOC111192668


Basic Information

Item Value
gene id LOC111192668
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31577353 ~ 31579788 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670493.1
AGATGGATCCGTCCGTATCACAAAACGAAAGAGGAAATTGGACAGACCATCGTACTCGAGCAGTTTCTCAGCATGGTCAACCCGGAGTTGAGGAGCTGGATCCTCGAACGTAGCCCgacttcagcacagcacgcagTAGATATGTCGGAGGCGTTCATGGCGGCGAGACAAGCTGAGGGAGGATTTCAGCTGGGAAAACCAGATTCCGGCAGGCAGAGGGGTGAGTTTGAGCAACGTGAACATGGTGTTGTGATGAATCAGCTTAGACCTGCCTTTAAGACGCAATGGCGCAAGGGTCCCAGTAAGAACCCtatagataaacaaaagatCAGATGCTTTAACTGTAACCAAATAGGCCATATAAGCAAGGAATGTCAGTACCCCCCAAGTAGTGCTAATCAGCTATGCTACATACCTAGAAAGGAAAACTCTTTTACTACAAGGGAAGGTAGTGACGAGACCACAgtttttgttaaaatcaaaggcAAACAGTATAAAGCATTGGTAGACACAGGGGCTAGCCAAACACTAGTGACGCAAACGTGTCTAGACCACCTGCAATACAACTTGACGGGCAAACTTAGGGTTAAATGTATCCACGGTGACGAGCAGACATATCCTACTACAGAGATTACCATCTCAATTAAAGGCCAGGCGTACCTGGTAAACGTAGGAATTGTACAAAACGCACCTTATGCTGTCATATTAGGTAGAGATATCCCAGTACTGGTGGATCTACTAAATAGCGACGAGGAAGGCACAGCAGAGGTCATGGTTATTACCAGGCAACAAgcaaaaaatacaccaaaaGACAATTTGGACATGCTCAGCAAACTACCTTATGCTCATGAAATAAAGCGTAAAAAGTCGAAGATGGAAAGGCGTAAAGAGAAGATTAAAGGCACCAAAGTGGCAGAGAAAATAGAGCAGCCAGCTGCTAATATCTTTAGCCTACCCTTTAACATTGAGGAACAGCAGAGGGAagatataacattaaaaccacttttCTCTAAAGCAGCACAGGACGGTGATAATAGAGAAGGTTGTCACTTAGCTGTAAAGGACAACAAGCTTTACAGAATCTCGGAGAAGGGAGAACAGCTAGTACTTCCACAGGGTTTGAGACCTGAAGCGCTTAAAATGGGACACTCAGACCCATGGGCAGGCCATTTTGGCCAAACTAAAACCTTTTTTCGTGTAGCTGACAGATTCTACTGGCCAGGACAATTTACTGACGTGGTGCAGTATTGTAAAAATTGCCCCGAGTGCCAATTAACCGCACCACAGAAAAAATCTGACAGAGTACCAATGATAAGTATGCCAATCATAGATGTGCCATTCACGCGCATAGCCATGGACGTTGTAGGTCCATTACCACGCACTACAAATGGCAACCGTTACATCCTGGTAGTGTGCGATTACGCCACTAAATATCCCGAATGTTTTCCGCTTAGAAACGTCAAAACACGCCAGATCGTCAATGCCCTCATCCAACTCATCTCCAGGGTAGGGATCCCTCGGGAGATATTGACAGATTGTGGTACCAATTTTACATCTAAGCAGATTAAGGCAGTTTACTCCCTGTTGGGCATTAAAGGGATACATACAACACCATTTCACCCTCAAACTGACGGTCTGACAGAACGCTTTAACAAGACCCTAAAGCAAGCATTAAAGAAACTCACCAACACCAACGGAACGGATTGGGACACATGGCTACCATACGTCATGTTTGCATACCGTGAAGTGCCCCAATCTTCCACTGGTTTCTCCCCATTTGAACTTTTATACGGACGCCAGGTGAGAGGCCCTCTGGATGTCCTGAAAGAAGCTCTGGAGGGAGACAACAGAGAACAAGGACTAAACATTCTGTCGTACGTcatgaaaatgagagagaaactgaGCCAGCTCGTTGAGGCTGTCCATGAGAATATGGGAAAGGCTCAGGTGCAACAGAAGCGGTGGTACAACCAAGCAGCACGGACCAGAGTGCTACAGGAAGGACAACAAGTACTCATCCTGTTACCCACTAGCGACACAGGACTGTTGGCTAAGTGGCAGGGTCCTTACAAAGTGCACAGACAGGTCGGCGATACCACGTATGAACTGTACATGCCATACAGCAGGAAGAAACTCCAAAGCTTCCACATCAACATGCTGAGGCCATGGAACGAGCCTGAGGCTGCAGGCTCAGAGCAGCTATGGGTCAGAGCAGTGGAGGACGAATAGGAAGCAAAGGAGCAGTATTTCCCTACAGGTGGCGCCAAGTCAGTTCTTCCAGAAGTGTCACACCTGGGGGTACTGCAGAAAGAGGAGTTACTGCAAGTAATTCCACAAGGTGTGTTCTCAGAGGAACCTGGACGGACAGAGGTCACGCAACACAACATTCGACTCATCAAAGACGGGCCAATTCGTCAGACATCCTGCAGAGTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670493.1 True 2436 mRNA 0.47 1 31577353 31579788

Neighbor

gene id symbol gene type direction distance location
tmem132c si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC108442515 coding downstream 144702 30967612 ~ 31432651 (-)
glt1d1 NA coding downstream 734053 30762503 ~ 30843300 (-)
LOC103041976 cgnl1 coding downstream 1027424 30528755 ~ 30549929 (-)
LOC103045861 LOC108435653 coding downstream 1080041 30437437 ~ 30497312 (-)
polr2m LOC108435653 coding downstream 1140820 30423138 ~ 30436533 (-)
LOC103041868 NA coding upstream 18674 31598462 ~ 31610954 (-)
LOC103043728 NA coding upstream 164084 31743872 ~ 31759081 (-)
LOC103045458 olfml2a,olm2a,LOC105894692,LOC104951789 coding upstream 213299 31793087 ~ 31825503 (-)
LOC103027824 NA coding upstream 264286 31844074 ~ 31849517 (-)
tti2 NA coding upstream 293828 31873616 ~ 31879260 (-)
LOC111192666 NA non-coding downstream 96887 31477576 ~ 31480466 (-)
LOC111192663 NA non-coding downstream 101716 31474911 ~ 31475637 (-)
LOC111192662 NA non-coding downstream 201497 31372867 ~ 31375856 (-)
G55663 NA non-coding downstream 573851 30987332 ~ 31003502 (-)
G55654 NA non-coding downstream 587673 30982056 ~ 30989680 (-)
G55779 golga1,LOC107703180 non-coding upstream 130517 31710305 ~ 31712936 (-)
G55788 NA non-coding upstream 148995 31728783 ~ 31730244 (-)
G55858 NA non-coding upstream 240144 31819932 ~ 31863678 (-)
G55874 NA non-coding upstream 287611 31867399 ~ 31869197 (-)
G55884 LOC108411167 non-coding upstream 329228 31909016 ~ 31910332 (-)
LOC103046862 LOC108410878 other downstream 1642923 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 1736600 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 2976843 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 3153398 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 3419904 28153421 ~ 28157449 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 55693 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 151676 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 1192239 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 1569286 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 3510942 35090730 ~ 35108420 (-)

Expression


Co-expression Network