LOC103041868


Basic Information

Item Value
gene id LOC103041868
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31598462 ~ 31610954 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670494.1
ACCCACCTTGTGCCTGAGTAAAAGGCAGTAAAGCTGCAGGCAGGCGGGCAGGAAGTATCCGGGTATTGGTTAATCAGGTTGTGTGAGTTGAGTGGCCACACGGCGTCTTTCACGTTGACGAAACTTCACGGCTTGGATGTTTGTTTTGGGCGTCGATACGCAACGTAAGAGAAACAACGTGGGTGAATGTGATAAATAGGAGCGCGTGGAAGTGAGGATGGGAGCTCTGCTGTCTCGCATGGGAGCGATCGAGCtgaggagagaggagggagCCCGAGGTGAAACTTACAACATGCTGCTGGAGACTGAAGCCACGCTGCGCTTTCAGCGCGCCCTGAAGCGCGAGCTCTACTTCGCGCGCGCCGCTGTGCTCGTCCtcgtgctggtgctggtgctcgTGCTGTCGCTGGGCTTCTGCCTGTTGTTCTACATAGAGTTTCCCGCGTGCAAGGACAAAGGACACGACAGCAGGGCAAATATAGATCAAGATCACCACACCGCCAGCAGATTGCGATCCGACCCCAAGCAACCCTGCTTAGATCTTCAGAATGAAACTCAAAATCACCAGCAAGATGATATCTCTGAGCCTAAGCCACCACCCTCGGCTTATCTGATAGCTGACTGCTACACCAATTCAGCGCAAAATGAAGACAACGTCACATGGGGTTTAAGAATGGAATTGGTTGATTTCAAAAtacaagacagcaagtctttgatTGTTCCTGAAAATGGGATGTACAGAATTTCGCTGCAGATTACctacagaaacagagaaagtaAAAAAGATAGTAAAGAAGATAAGCCAGAACATATTTTGCTCTCCCACAAAGTTCTGGTGTACCAAACAGGGTACAGTAACAAGCCCAGACCTGTCGTGGAAGCCTACGAATTCGTCTACTGGCAAAACTTTGAATGGTATAAAACAAAGTACTCTGAAAATGACTTCATAATGAATAAGGGGGACATAATCATGGTGGTGTCCTCCAACCCCTCCTTCATAAAATGTGGTGTTACATCCTTCCTCACTGTCCGTCACGTGCCCACGGGTTAGGCGTAGTGTTAGTGACAGGGTTGTATATAGCTTCTTTTTTTCATGTAGCTTAGTCTTTCACCACTTGTACATAGCTTGTATTTTTCTGTCCTTTACTACTCAAGCATGTATAGTGAGATTGCTATCCTATTGGAGTGGAACAGGATAACTTTAGATGTTGGATTTTCTCATCCTGCTGTAATTTtgtttgcctttttttctcACTTGTATTTCATTGAAACATGTGGAGAAAGATTCTTTTAGAACAGTGGTTCTCAAAGCATGGTTGTACTCGAAACATCCCAAGGTATATGATACTACAGTGGAtgacctcagaaaaaaaaaactgcttgcattaaaatattatagaCTGAATATTTTGATGCAAGCAGTTTACCTAACGTTacagttgtttgtttttagtgttCTACCCTTTGGAACATGTATGAAAGCCCACATTTTAAGTCTTCACTTCTTTAGGGCTACTAGATTTATTGACCCTAGagtaaaaccctgtggaacacCACACGATATGCTAGATCAACAAATCaccaatacttttgttttttacaacTGCTAAGAAGCGTTTAACAGTACTTTGGCTACTTTTTCTAAACTCTAAATACAGCAACATGCTTACCTCATAAAATTAACCAAATAGTTTATTTTCTGCACaaaagactgtttttttttgttgtcacATCT
>XM_022670495.1
ACCCACCTTGTGCCTGAGTAAAAGGCAGTAAAGCTGCAGGCAGGCGGGCAGGAAGTATCCGGGTATTGGTTAATCAGGTTGTGTGAGTTGAGTGGCCACACGGCGTCTTTCACGTTGACGAAACTTCACGGCTTGGATGTTTGTTTTGGGCGTCGATACGCAACGTAAGAGAAACAACGTGGGTGAATGTGATAAATAGGAGCGCGTGGAAGTGAGGATGGGAGCTCTGCTGTCTCGCATGGGAGCGATCGAGCtgaggagagaggagggagCCCGAGGTGAAACTTACAACATGCTGCTGGAGACTGAAGCCACGCTGCGCTTTCAGCGCGCCCTGAAGCGCGAGCTCTACTTCGCGCGCGCCGCTGTGCTCGTCCtcgtgctggtgctggtgctcgTGCTGTCGCTGGGCTTCTGCCTGTTGTTCTACATAGAGTTTCCCGCGTGCAAGGACAAAGGACACGACAGCAGGGCAAATAATCAAGATCACCACACCGCCAGCAGATTGCGATCCGACCCCAAGCAACCCTGCTTAGATCTTCAGAATGAAACTCAAAATCACCAGCAAGATGATATCTCTGAGCCTAAGCCACCACCCTCGGCTTATCTGATAGCTGACTGCTACACCAATTCAGCGCAAAATGAAGACAACGTCACATGGGGTTTAAGAATGGAATTGGTTGATTTCAAAAtacaagacagcaagtctttgatTGTTCCTGAAAATGGGATGTACAGAATTTCGCTGCAGATTACctacagaaacagagaaagtaAAAAAGATAGTAAAGAAGATAAGCCAGAACATATTTTGCTCTCCCACAAAGTTCTGGTGTACCAAACAGGGTACAGTAACAAGCCCAGACCTGTCGTGGAAGCCTACGAATTCGTCTACTGGCAAAACTTTGAATGGTATAAAACAAAGTACTCTGAAAATGACTTCATAATGAATAAGGGGGACATAATCATGGTGGTGTCCTCCAACCCCTCCTTCATAAAATGTGGTGTTACATCCTTCCTCACTGTCCGTCACGTGCCCACGGGTTAGGCGTAGTGTTAGTGACAGGGTTGTATATAGCTTCTTTTTTTCATGTAGCTTAGTCTTTCACCACTTGTACATAGCTTGTATTTTTCTGTCCTTTACTACTCAAGCATGTATAGTGAGATTGCTATCCTATTGGAGTGGAACAGGATAACTTTAGATGTTGGATTTTCTCATCCTGCTGTAATTTtgtttgcctttttttctcACTTGTATTTCATTGAAACATGTGGAGAAAGATTCTTTTAGAACAGTGGTTCTCAAAGCATGGTTGTACTCGAAACATCCCAAGGTATATGATACTACAGTGGAtgacctcagaaaaaaaaaactgcttgcattaaaatattatagaCTGAATATTTTGATGCAAGCAGTTTACCTAACGTTacagttgtttgtttttagtgttCTACCCTTTGGAACATGTATGAAAGCCCACATTTTAAGTCTTCACTTCTTTAGGGCTACTAGATTTATTGACCCTAGagtaaaaccctgtggaacacCACACGATATGCTAGATCAACAAATCaccaatacttttgttttttacaacTGCTAAGAAGCGTTTAACAGTACTTTGGCTACTTTTTCTAAACTCTAAATACAGCAACATGCTTACCTCATAAAATTAACCAAATAGTTTATTTTCTGCACaaaagactgtttttttttgttgtcacATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670494.1 True 1735 mRNA 0.43 5 31598462 31610954
XM_022670495.1 False 1732 mRNA 0.43 5 31598462 31610954

Neighbor

gene id symbol gene type direction distance location
LOC111192668 NA coding downstream 18674 31577353 ~ 31579788 (-)
tmem132c si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC108442515 coding downstream 165811 30967612 ~ 31432651 (-)
glt1d1 NA coding downstream 755162 30762503 ~ 30843300 (-)
LOC103041976 cgnl1 coding downstream 1048533 30528755 ~ 30549929 (-)
LOC103045861 LOC108435653 coding downstream 1101150 30437437 ~ 30497312 (-)
LOC103043728 NA coding upstream 132918 31743872 ~ 31759081 (-)
LOC103045458 olfml2a,olm2a,LOC105894692,LOC104951789 coding upstream 182133 31793087 ~ 31825503 (-)
LOC103027824 NA coding upstream 233120 31844074 ~ 31849517 (-)
tti2 NA coding upstream 262662 31873616 ~ 31879260 (-)
slc18a1 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC106587027 coding upstream 273396 31884350 ~ 31898822 (-)
G55757 NA non-coding downstream 17393 31575369 ~ 31581069 (-)
LOC111192666 NA non-coding downstream 117996 31477576 ~ 31480466 (-)
LOC111192663 NA non-coding downstream 122825 31474911 ~ 31475637 (-)
LOC111192662 NA non-coding downstream 222606 31372867 ~ 31375856 (-)
G55663 NA non-coding downstream 594960 30987332 ~ 31003502 (-)
G55779 golga1,LOC107703180 non-coding upstream 99351 31710305 ~ 31712936 (-)
G55788 NA non-coding upstream 117829 31728783 ~ 31730244 (-)
G55858 NA non-coding upstream 208978 31819932 ~ 31863678 (-)
G55874 NA non-coding upstream 256445 31867399 ~ 31869197 (-)
G55884 LOC108411167 non-coding upstream 298062 31909016 ~ 31910332 (-)
LOC103046862 LOC108410878 other downstream 1664032 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 1757709 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 2997952 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 3174507 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 3441013 28153421 ~ 28157449 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 24527 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 120510 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 1161073 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 1538120 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 3479776 35090730 ~ 35108420 (-)

Expression


Co-expression Network