LOC111192669


Basic Information

Item Value
gene id LOC111192669
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32817117 ~ 32820294 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670514.1
GAGTATACTGACACCCCGCGGTCCGACATGGAGTTCTGGCGAAGCGAAGAGCATCGCCTTGAGGGGGCTTCTGGTGGTTCAGGAGACCACTTCATTCTGCTGCCTTTTTGTGGCACTGAGGAGCTGAGGGCTGCCTGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGACGGAGCTCAGGAGGGTCCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACGCGTCTCTACCACTCTCCTGCCTTTTTGCGAGGAGCCAGACCCCTGGACGGAGCTCAGGAGGGTCCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTTATTCAGAAGgtGGAGTCTCACTGCGCACGCGACCCCCCCACTTTCCTGCCTGTTTGCGAGGAGCCAGACCCCTGGACGGAGCTCAGGAGGGTTCAGCTCGAGTTCCTCAAAGGGAAGCTGAAGGCCCTTATTGAGAAGCAGCTTTCCTGTCCCAGGCGGCGTGTTGGGAGTGTTCTGGTGCCGGTTATGGAGGCAGCCTCCGCTCACAGGCTGGACTCTACGGAGCCTGATATCCCAGGTCCAGTTGCACAGTGCGaagaagctccagctccagacCTCACCACCACCTCTCATCCGGAGCCATCCAGCCAGGGAGACACTGCACTGTCACCCACCACTAATACACAGTGCAGATTCCTGAAACGCCCTGTCACCAACTTTCGGACCTCCTTTTTGTGTCGTTTCAGGTCTCCTCGCCGAGTCCTGGTGCAGGTAGAAGAGGCAGATCCCTCTCACCGGCTGGACCTTCAGGACACAAAGCCTGAACTGGAGCCAGTGCCAGCTGCACAGGACAAGGACGACCTGGAGAACGACGTGGAGGTCCTGGAGTTGGAGCATCACAGGCCAGGAGAGACAGCTCCAAACAGAAAGAGAGGATGGCTACAGCACCTGCTCAGCTGCTTCAGGTGGAAAGCAAGAAAGAGCTGAAAAGGTGGTCTGTAGCGGATCTGTAGAGccgtacatacatacacaaacacatacattaatacatacatacacacacgtacatTGCAGGGTTAGAATTTTGGTAAATGGGCTGAGGCACACAGTAGGATGTTAGCAGTAATCTATCTATTGTGGGTAATATTCTGTGATCTCCTATGTCGTGAGCTTGGAGGGGGTGAGTCTGGGATGCCAGAATTCACTGCTGAGTCTTCCTGAGGTGTTCAGTGTAACGCTTATGAAGGGAGGTCCTCAGCGGATGACCCCTGTGAAGAGCTTGCGGCGTAGTGAAGGATCAGTGTATCAGTGGGAGAAGGGAAGGGTGGGTGTTTCAtgtttgggataaatgttgctgattggatGGTAAATGGCCACAGCAGCGTAGTTGTTAGCTGTAGGAGTTTATGGTTCTCGTGAAGTTTAATGTAAATGAgtgggagagtagagtataggagAAGGGAATGGGTGTAGCTCTAGATTTAACCACAGTTGCGTTACTTACATAGATATAGAGATAGACGAATAGGATACACatagaaatacacacacagtaatacactcacatacacacacacacatacatacacaaacacacgtaCACATAAtttcaaacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670514.1 True 1632 mRNA 0.53 11 32817117 32820294

Neighbor

gene id symbol gene type direction distance location
ep400 ep400 coding downstream 46447 32735413 ~ 32770670 (-)
ncor2 LOC108412761,LOC107742750 coding downstream 185037 32450153 ~ 32632080 (-)
ccdc92 ccdc92,LOC107742742,LOC107687960 coding downstream 536788 32257775 ~ 32280329 (-)
fam160b2 fam160b2 coding downstream 777769 32025660 ~ 32039348 (-)
adam9 adam9,LOC107591921,LOC107722987,LOC107702867,LOC107691559,LOC107566966 coding downstream 798698 31968525 ~ 32018419 (-)
adgrd1 NA coding upstream 7874 32828168 ~ 32915531 (-)
rimbp2 rimbp2,LOC108414005 coding upstream 102776 32923070 ~ 33133867 (-)
piwil1 piwil1,LOC107723252 coding upstream 359697 33179991 ~ 33188623 (-)
fzd10 fzd10,LOC103024082,LOC108441898,LOC108266036,LOC107669258,LOC107659609,LOC107574912,LOC107723249 coding upstream 435425 33255719 ~ 33258251 (-)
trnaa-agc_13 NA coding upstream 540075 33360369 ~ 33360441 (-)
G56085 NA non-coding downstream 372478 32444401 ~ 32444639 (-)
G56089 LOC108412767 non-coding downstream 374664 32437543 ~ 32442453 (-)
G55952 NA non-coding downstream 563956 32252943 ~ 32253161 (-)
G55938 NA non-coding downstream 574578 32241421 ~ 32242539 (-)
G55939 LOC108440819,LOC108265606 non-coding downstream 577393 32221144 ~ 32239724 (-)
G56110 NA non-coding upstream 4546 32824840 ~ 32826872 (-)
G56137 NA non-coding upstream 357901 33178195 ~ 33178579 (-)
G56148 NA non-coding upstream 400198 33220492 ~ 33226588 (-)
G56172 NA non-coding upstream 434714 33255008 ~ 33336096 (-)
G56186 NA non-coding upstream 538471 33358765 ~ 33366613 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 14957 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 1076896 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 1126309 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 2882687 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 2976364 29744028 ~ 29840753 (-)
LOC103023237 NA other upstream 328780 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 2270436 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 2465128 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 2476047 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 2501691 35321985 ~ 35332434 (-)

Expression


Co-expression Network