LOC103025291


Basic Information

Item Value
gene id LOC103025291
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32244560 ~ 32251009 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670517.1
tctgcctCAGTAGGGTCTCATTCATACCTGCAGtaggaaagaagaagaagaacttcAGGAGAACTTCAAAGCTTTGAGGACTTGCTTCCGTCAGTTCTCTATACTGCAGATTTTCTCCCAGACCTCCATCATGCTATCCCAACGTGGAGTCATCTCATTCTTGGCCTGCCTGTTGCTCCTGACAACACTGTTCCCTGATGTCCAGTCTCGACGTGGTGGTGGTTTAGGACGCATTGGTGGTGGAATGGGTAGAGGTGGAGGAGGATGGGGAGGAGGAACAGCTAACCGGGGAGGCTGGGGAGCAGGCCACGCCAACACCCATAGAACCCCACATGCCCACGCTGCAGGCCACGGTCATGCTGGGGCACATGGCCACGCCGGAGCCCATGGCCACCCTGGAGCACATGGTCACGCTGGAGCACATGGCCACGCTGGAACCCATGACCACGCAGGAGGCCACAGCTCTGGTGGCTCCAGTGCTGGAAAGATTGCAGGGGCGGCTGCTGCCGGAGCTTTGGGTGGAATGGTATTGGGACATGGCCTGAGCTCCATGACTGGGTACGGCCATGGCTATGGAGGCTACGGCCACGGGTACGGCCATGGATACGGCCACGGATACGGCCATGGGGGACATGGCTACCCCAGGCATGATGGGCATGGACACGGACACGGCGATCTGAACGAGACGGACACAGATTACTACTACGGAGCTGCCAGCAGGGGGCCCACGTACGGGTTTGTTGTGCTGTTCGGAGCAGCCGTGTCCTTCATACTCGGACACTGGCTCTCATAGGCAGCTGGACAGTGCCCTGAAACAAAGACTTTCATGAATTACATGATCAGTGTTCAAGATGTAGTTTTCAGCCATAACAACAACTCACAACAAACTGCGTGGAATGGGAACCAttctgaactgaactttgagCCATGGAACAAACACTTGGTCAAACTTTGCTACTCTTgtcttttataaaatgtttatatatggttttcttttttaatttaggtTCAGGCCCAAAAATCTGGACTGGATTTATGGTTTATGACTTGCAACAGCTAATTGGACTTTTTACACCAATTTTCTAGGTTAAATGTATGGGATCAAGGTCAGACAATGTAAATACTGAACATGTAGAGTGAGTGTTTGTATTTTcacaatgtaaatattttctttttctcatttttttcttatttatatcttagttaaaacaattattagttattatatgGCTGTCTTGTAAAATGACAACTTTGCAGGAgaagggaaaaaatatatttttttaaaagcatttcaaATGGTCCATCATTAAAAATAGAGATATAAGGTTTTGGCACAACAGCAGTGATATACTACCTTTTTGAACTGCTTTAATGAAACATCTGAAAAAGTTTAGGTTAAATGAAAATGATgagtacactcttaaaaataaagctgctaCAAAAACATTCAGATctaataaagtacatttaaatcAAATGTTCAAGGTTTTTTAAGTCTTTGATTATGTGACATTGTACAGTTTCctttaaaaacatgattatttgTGGAAATTAACATGTTTTTCCTATGAAAGCACTTAAAGAGCCATTTATTTATCTCCTTAATTTTTACAATTGTGAaactattcattttatttaatgggCATTTATTCTTAAATGTCCAAGGTCTAAACTGTAGTTACTGAAGGACATCCCATACGACATAAGGAGTTTAAAAGAGTTAAACAGGTGGAACTGCACATGGTTCTTGAGCATGGTATTTGTCCTTTCGTGCTGTTCTCTCAAAAGTCTTACAGACGTAACCTGTCTGGGTGTCTGAAGGCCCTACGACAATGCAGAGTGAGGAGGAAGTGGTCTCTGCAAATAGACAAATCACATTATTGGGGAATAATTAGATTACCAGTAGCAGGATGTGGTGGACTTGAAGGTGAAGGCAAATCTCGTTTACGATCTGGGTGCAGTCTACACTCAGCTCTCAGTGAAAACAATGCTATTCTTGTTTGCCATCAATGAGCAACCTAATCTTCTTCTACTTAAGCCTATGTTCTTATAGTTTTCCATTATTCACGCTTAAGAACAAAGGTCTTATAAAAGGTTCTTTGACCGATGTCATAGAAGAAACACTTTTGGTTCCATGATGAAAAATTGGCActtatttatgaatttttacAGAATTCCTAATGTAACCCACATGTTTTCTTCATTGGGATTTGTTCATTTTACGAGAACAATAATATCTACAAGCTTTCTCAAAGTAATCAACTCAAGTATGATACATATTTGGCAGACACAAACTTGGTATCTTAAACtcaatgttatatatttatatataatgtattttgcaATGCTTTTGTAATGCTGAATTGTCTacaccaacataaaaaaaactgcagagtGTCTATCAAAACAAACTGTACGCATGATATGGTTAGATGGCACCTCTGAAGGAATAAAGAATCAGTGTTAACCCTTTGA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670517.1 True 2475 mRNA 0.41 2 32244560 32251009

Neighbor

gene id symbol gene type direction distance location
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding upstream 2001 32221177 ~ 32242559 (+)
nudt18 NA coding upstream 219942 32020346 ~ 32024618 (+)
LOC103029092 NA coding upstream 334749 31905217 ~ 31909811 (+)
LOC103046271 NA coding upstream 375316 31867154 ~ 31869244 (+)
mak16 mak16 coding upstream 380851 31857426 ~ 31863709 (+)
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding downstream 166670 32417679 ~ 32440011 (+)
LOC111192715 NA coding downstream 462540 32713549 ~ 32729908 (+)
LOC103026160 NA coding downstream 1077777 33328786 ~ 33360143 (+)
LOC103024594 NA coding downstream 1125010 33376019 ~ 33378613 (+)
gck gck,LOC107550933 coding downstream 1252606 33503615 ~ 33509374 (+)
G55833 NA non-coding upstream 218655 32025596 ~ 32025905 (+)
G55846 adam9,LOC104959316 non-coding upstream 260270 31980914 ~ 31984290 (+)
G55821 ppiaa,LOC107756846,LOC108411171,LOC107691558,LOC108265559 non-coding upstream 276417 31911997 ~ 31968143 (+)
G55955 NA non-coding downstream 53292 32304301 ~ 32304773 (+)
G55977 NA non-coding downstream 193724 32444733 ~ 32446803 (+)
G55978 NA non-coding downstream 196663 32447672 ~ 32448789 (+)
G55979 ncor2,LOC108412761 non-coding downstream 198489 32449498 ~ 32470210 (+)
G55988 ncor2 non-coding downstream 212579 32463588 ~ 32466440 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 27149 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 93990 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 267141 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 320465 31920820 ~ 31924095 (+)
G55532 cgnl1 other upstream 1694499 30528862 ~ 30550061 (+)
G56160 NA other downstream 1107205 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 1153565 33404574 ~ 33406650 (+)
izumo1 NA other downstream 1313819 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 1384143 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 2252105 34503114 ~ 34511684 (+)

Expression


Co-expression Network