LOC103022237 (ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720)


Basic Information

Item Value
gene id LOC103022237
gene name ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34848079 ~ 34870296 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670532.1
GTCGCTCTCCAGTACCCCACGAAAAAGCTGTCAGTGAGAGCAGAGCAGGGGGAGAATTACAGAAATCAGCCCGCGGTCGTGTAAACGagtgtgtaaatgtttaaagGCTCGGCTGTGCTGCGGTGTCGATTCGCGGGCTGGAAGTGAAACGAGGGGAAAGAGCCGCAGCGTCTCCCATTCAAACCGCCCAGCCGGGCCGAGcggactgactgactgactgacacaCAGCACAGGGAGACGCAccgggctgctgctgctgctgaaacaCAGCGAGCTAATGGCGTTGAAAAGGATCCAGAAGgAGTTGACAGACCTCCAGAGGGACCCACCTgcacagtgttcagcaggacCTGTGGGAGAAGACTTGTTTCACTGGCAGGCGACGATAATGGGGCCGAATGACAGTCCATACCAAGGTGGCGTCTTCTTTCTCACAATCCACTTCCCTACAGACTACCCCTTTAAACCCCCTAAGGTAGCATTTACAACAAAGATCTACCACCCCAACATCAACAGTAACGGCAGCATCTGTCTCGATATCCTGCGATCTCAGTGGTCTCCTGCCCTCACCGTATCGAAAGTTCTCCTCTCCATCTGTTCACTGTTATGTGACCCGAACCCAGACGACCCGCTGGTGCCTGAGATTGCACACACGTACAAAGCTGACAGAGAAAAGTATAACAGACTAGCGAGAGAATGGACGCAAAAGTACGCCATGTGAGAGTGCCTAACCCTGCTGGAACACCCGCAGCGAGCGAAACGGACAGAGGAACCTGTTTTAACGTTTTTAACATGGGCAGAAAGAACCCAGTGGAGAACAGATCAACACCAAACCTGTGGCTGGGATGAAGAAGAGAGCGGAGAGGAGGAGACCGGAGATCACCCTTAGACGTTTCGGCACCCGCATGCCGAAAGCCGCTGCCGGACCGGTGCCTGGACGTGTGAGCCTGAAAGGAGCCTGGAAAAATCCCGGAAAACTACTTCTCTGGAAAAACGGGACGAACCCCCCGCCAGGCTACCACAATCCCAGGAAATTAGACTTCTGTGACTATTAGTACTACTGCTGTTCTCGTGATTGACTTTTTCTCAGTGTTCCTGTTGCCactgttcttcttttttctcatttttggaTTTGCTGATGAGCCCGTGCCACTGCCAGGCCGGCACTTCCTGGATGGAGGTGACGGGTTTTGGCTTCCCTGATAGATTTACCATCTCCTTTGAGTTTCCGTGGataccatgtgtgtgtgtgtgtgtgtgtggtctagACATGTAATGCTATACACTCAGGGCACAAACAATTTAGaccattattctttttttatcatattttagtGAAATTAGTAATTTATCACAAATTGGATAAAAATTATGAACACAAAATCAACACAGATTGTTTTTACACAGACATGTGCCCCCTAACATGGGTCAAATACTAGCATTAAAATATGTCTTGCAATTAGGGCTGTAACAATATATTAACCTAACCCATTGGTTTAATACTAAATGTaggataaaaacatttttgaagctttttaaacaagaaaaataatgagaaaaaaatacagtatgcagCTGTTGCATAATGTAACAAGACTAGAGTAAAAATGTAGGGATGAGTGTGTTTGTTCTAAAAACGGTGTTTAAACCATGAAACTGCATTAGATTCAAAATTCCACGTGCCAAAGAATGCATTTCTCCAGTATTTTAAGTTTGTAAGTGTTTCACATTTGTTGACTCGTAAAAAGCTCAAACACAgttttaccaccctgttattttaCCTGAAtcgtgtttatttttcttttatggaAGCACAGTTtcaacactgaaacaaaaacactgtCACTGTTCCTGAGTCTTACTGTAGAGTGCTGCTGTACTCTCAGTGTGATGTGTTGTTAGAAAGCTAAAGAGGCTGTAGCCAAATTAGCTTTCAGTCATGCGGACAAACTGGCTTTCTCAAGTCTTACcggtaaaaaaaatagaaaaaaagagcagGTTACATCAGATATATAATTGCATTGTTCAGATTTATTGTTACAGCCCTACCagcagtactgtattttttgcactataaagtgtACCAGATTATGAGGCGCACTATCAGTGAACGTCTAGTTTCattcataaggtgcaccagattatgaggtacattttatgcgacactagtaactagtagtaggaacagaAGTGTCATCAGGTTTTCCTTCTGATTCAGcaggtgagacctgtaaagctaagctgcgttaagtaaa

Function

symbol description
ube2d4 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D4 (ubiquitin conjugating enzyme E2 D4 (putative)).

NR:

description
ubiquitin-conjugating enzyme E2 D4

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0044314 protein K27-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670532.1 True 2255 mRNA 0.45 7 34848079 34870296

Neighbor

gene id symbol gene type direction distance location
LOC103022994 LOC108426650 coding upstream 182081 34639816 ~ 34665998 (+)
LOC103024866 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding upstream 314745 34530300 ~ 34533334 (+)
LOC103026546 LOC108266031,LOC107563852 coding upstream 416244 34409348 ~ 34431835 (+)
nr6a1 nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838 coding upstream 470154 34346593 ~ 34377925 (+)
LOC103038175 dusp2,LOC108440670 coding upstream 1223327 33619314 ~ 33624752 (+)
dbnl dbnl coding downstream 9524 34879820 ~ 34923018 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221 coding downstream 120530 34990826 ~ 35005720 (+)
LOC103047196 NA coding downstream 144821 35015117 ~ 35018725 (+)
LOC103037259 pi4ka,LOC108440297,LOC107671001 coding downstream 168873 35039169 ~ 35083292 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding downstream 213423 35083719 ~ 35089185 (+)
G56411 tcf7l1,LOC108426610,LOC108265410,LOC107556226 non-coding upstream 136604 34707496 ~ 34711475 (+)
G56370 NA non-coding upstream 230966 34608634 ~ 34617113 (+)
G56368 NA non-coding upstream 244101 34601453 ~ 34603978 (+)
G56367 NA non-coding upstream 261252 34584172 ~ 34586827 (+)
G56364 NA non-coding upstream 302142 34545687 ~ 34545937 (+)
G56419 NA non-coding downstream 4265 34874561 ~ 34876645 (+)
G56437 NA non-coding downstream 220440 35090736 ~ 35093338 (+)
G56444 NA non-coding downstream 240745 35111041 ~ 35168021 (+)
G56445 NA non-coding downstream 244689 35114985 ~ 35115756 (+)
G56448 NA non-coding downstream 263287 35133583 ~ 35136048 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 96516 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 336395 34503114 ~ 34511684 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 1208002 33635152 ~ 33640077 (+)
izumo1 NA other upstream 1252261 33564828 ~ 33595818 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other upstream 1441429 33404574 ~ 33406650 (+)
LOC103047498 NA other downstream 91504 34961800 ~ 34989285 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 356189 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 405783 35276079 ~ 35284271 (+)
G56504 NA other downstream 550422 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 1085808 35956104 ~ 35964510 (+)

Expression


Co-expression Network