LOC103040650


Basic Information

Item Value
gene id LOC103040650
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35178158 ~ 35189957 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670539.1
acacacacacacacacacacacacacacacacagtctctgtaatgtgtgtatttgcatCCGAGTCTCACAGTAGAAGTTGCTGATGAGCTGAAGAGGATCATGACCATGagtttctTCGGGAAGCTAAAAAACCTACACAGCGGACCCCCGGCTCCCCCCAAGAGAATAGaTAATAATGCTGGATACGGCTGGTCTGAGGATGAATTTGGTGAAGAAGATTGTGATACGTATGAAGCTCCGCCCTGCGAGCGCCCGACTATTAAAGTCCAGCGTCAGCCGGTAGAGGAGAACGTTTACCTGGGTTATCCTGAGAGAACTCCACATCCTGTTATTCCTCAGAGACAGGTGGCTCCGCCCCCACGACCTGCCAAGATGACACCTAAAACgaGACCGCCTGAGCCGCCGCCTGATCAGGAGGAATTCTACATCGACCCGAACAACAGAAAATttcCTGAAGTTAATCGTAAAGATAAGAAGGCGGTGAGGAAGAGTCCTCCAGCTGTTCCGGCTCCAAACCATGAAGAAGATGTTTATCTCGACCCAAATGAAGGACAGGGTGGGAGATGTCCGTCTCCTGAGGTGTATTTGGAGCCGACGCAGGctCGGCCCCCGGTCCCCCGCGGGGGTGTTCGTGTGGTTCTGCCCACCAGCGTTCCTCCTGCTCTCATAATGAAACCGCCTGTTCCCAGAGCCAAATCTAACTCTATTGCCGCCGGTGACTTTGTGAAGTCAGGTCCACCTCCAGACATGAGGAGCTACACCTTTCCTGCTAAAGCTCCGCCCCCCACACCTCACACCAAACCACCCCTACCAATCAGCCTGAAGGAGCCCAAACcaagTCCTCCTGTTCCTCCGTCAGTCGAGAGCTCAGCGCCGCTGATCACACCTGGAGGACAGaatCAGGAGGCGGGGCTGGAGGATCAGGAGTGGTTTGCGGGAGAATGCGGCCGCAGGACAGCGGAGGAAACTTTACTCAGAATTAACCTGGACGGATCGTTTCTGGTCCGCTGCAGTACGGCTCAGGACGCTCGGCAGCCCTTCACTCTGGTGGTTCTGTTTAATCAGAAGGTTTATAACATCCCGGTGCGCTTCCTCAGAGACTCCAGCAGCTACGCCCTCGGCAAGGAGGGCAAGAAAAACGAAGAGGTACCAGATTAACATCAGAAattcactttattataaaccaGTTTACTCAGGTTATTATTGTTCTTATTCTTCAGTTTTCTTCAAAAAATAAGAACCACTTTTAAAGATCTCAAACCCAACTTCGAAAAGATCTGGGATACTGTgtatataaaagtaaattaatgaaaataaaactaaatgcaATGATTCACTAATCTCATAAATGaatcttttattt

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670539.1 True 1364 mRNA 0.50 18 35178158 35189957

Neighbor

gene id symbol gene type direction distance location
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 2197 35135751 ~ 35175961 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding downstream 47212 35115510 ~ 35130946 (-)
serpind1 serpind1,LOC107738496,LOC107698014,LOC107560052,LOC107671000,LOC107722856,LOC107559590 coding downstream 117159 35055601 ~ 35060999 (-)
LOC103046374 cox5b,LOC103046374,LOC107602047,LOC108426657,LOC106567989,LOC106563057,LOC107558099 coding downstream 188895 34986073 ~ 34989263 (-)
LOC103027077 NA coding downstream 238806 34932686 ~ 34939352 (-)
plat NA coding upstream 8523 35198480 ~ 35216765 (-)
vdac3 vdac3,LOC107754399,LOC107560056 coding upstream 56836 35246793 ~ 35259232 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding upstream 89866 35279823 ~ 35284290 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding upstream 120732 35310689 ~ 35315573 (-)
LOC103031304 zdhhc12 coding upstream 126325 35316282 ~ 35320788 (-)
G56580 NA non-coding downstream 1179 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 94885 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 106399 35071316 ~ 35071759 (-)
G56548 NA non-coding downstream 141884 35035935 ~ 35036274 (-)
G56532 NA non-coding downstream 187023 34971249 ~ 34991135 (-)
G56600 polb non-coding upstream 75936 35265893 ~ 35272290 (-)
G56602 NA non-coding upstream 85990 35275947 ~ 35278890 (-)
G56620 NA non-coding upstream 160868 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 194821 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 247876 35437833 ~ 35440647 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 69738 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2000508 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2375998 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3437937 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3487350 31635481 ~ 31690808 (-)
acaa2 acaa2,LOC107671002 other upstream 95465 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 106384 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 132028 35321985 ~ 35332434 (-)
G56638 NA other upstream 230873 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 576813 35766770 ~ 35767677 (-)

Expression


Co-expression Network