plat


Basic Information

Item Value
gene id plat
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35198480 ~ 35216765 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670541.1
GGGTCCTCTGTGGGCAGCAGTAGAGTCTCGCGCGCTCAGAGCGGCTCACCTGTGGATTAGAGCGGAGGATCTTCACCTGCGCTGATCTGAGATCTGAGATCTAAAAGAAGGAGCTGAAGCTCATCACCCGTAAACCTGAGAGACATCATGAGTCTAATAATCCagaatctgctgctgctgctgcttgtgcTCCTCCACTGCTCTTCAGCTGAGAGGcAGCTGATCCACAGAGTGAGGAGAGGAACTCGTATTTACAGAAatccCTGTGTGGATGTGTATTCGGGAGCAGTGAGGGAGACGGGGGAGACGTGGTTGAGGTGGAGAGGACAGTTGGTGGAGTTCTGCCGCTGCTCCCCGGGAGGAACCTCACACTGTCACTACACACCAATCACTACGTGTTATAAATCTCGATGTTATAACGGAGGAACCTGTAAAGAGGCCCTGCGCTCAGGTGACTTCATCTGTCTCTGTGCACCAGGATTCACTGGAAACCAGTGTGAGATcaATCTGAGTGAGAAGTGTGTGGTCGGGTCGGGGTCTAGTTATCGTGGGACCTGGAGTCTCTCCAGATCTGGTAAAGAGTGTATTAACTGGAACTCCACCTCCCTCAGAGGAAAACTGTTCACGGCCCGGAAACCCGACGCTCTGAACCTGGGGCTCGGAAATCACAATTACTGCAGGAATCCAGACGGAGACGCCAAACCCTGGTGCTACGTTTACGGAACGTCCAGCATTAAATTGGAATTCTGTTCTGTAAAAAACTGCACAACAGccccGGTGGAGTGTGTGCAGGGTGCGGGACAGGCGTACAGGGGGACGCAGTCGGTCAGTAGGAGCGGGGTGAAGTGTTTGTCCTGGGACTCTCCCGCCGTCTCGCACAAGATTTACACGTCCTGGAGACAAAACTCACGAGAACTCGGCCTCGGCAGCCACAACTActgcagAAACCCGGATGGTGATCTCGGGCCCTGGTGTCACGTGTATAAGGGCAGCAGACTGACGTGGGAACTGTGTAACATCACCAAATGCCCGAGGAAGCCCCCCACCATCACCACCCTCGGCCCAAGAGCCCCTAAACCAGGCAGCCGAGgtgggTGTGGTCAGCGCTCTGCCGGGTCTCTGCCGGTGTTCAGGATTCGGGGGGGGCAGGTCAGTGATATCCGGGAGCAGCCGTGGCAGGCGGCTATCACCGTGTACCGCCCGCGCTCACAATCACACAACTTCCTGTGCGGCGGCGTCCTGATCGAGTCCTGCTGGGTCCTGTCTGCAGCGCACTGCTTCCAGGAGGGgtataACGCAGGCCGGCTCCGCGTGACCCTCGGACGCACGTTTCGGCTGCAGAACTCCAGCTCTGAGCAGATCTTTGATGTGGAGAAATACTGGATTCATGAACAATATAATGATGAGACTTATGATAACGACATCGCTCTTCTGAAGCTGAGCAGTGATGTGGGGATCTGTGCGGTCAGTTCTCCGGAGGTGCTGCCGGTCTGTTTGCCGGATCCCGGCGCGGTTTTCCCGGAGCAGACGGAGTGTGAGATCTCGGGATACGGGAAGGAGGAGGAGTtCTCTCCGTTTTATTCGGACCGCGTGAAGCAGGGTCACGTGCGCTTATGGCCGGAGAAAAACTGCGTGTCTGAGAAACTCTCCGGACGATTGGTCACCAAAAACATGCTGTGCGCCGGAGATACGAGGAACCGCGACGACGCCTGCAAGgGCGACTCTGGAGGTCCTCTGGTGTGTCAGAAGGACGGCAGGATGAATCTGGTGGGGTTGATCAGTTGGGGGGATGGATGTGGGAAGAAGGACACGCCGGGAGTTTATACCCgagttattaattatttatcctGGATCAGCAGCAAAATCAGATCCAACAGATAAAAACATCTAATGAGACTCGAAAtcaaagaggaggaagaaatgCTCTCCGTTACATTGAATCCAGAActgctgatctgagatcaggaTCCGCCGCAGTCTGGAGTATTAGGAGTAATGTGTAACAGCAGGCCTGTCATCATAATCACTTTATCAATTTATCACACGATAAATAAACAACTGCGCTGCTTTATTATCTCCTCTGCTCTCAGACACACAGtgcagttttactgctgctgaagtctttcacactgttcAATCCAGCAGCTCCTTAAACGGCTCGTTACACAGCTCGTTACACAGCTCGTTAGAGAACTAATTAGACAGCTCGTTATACAGCTCGTtctgatatatatatgtgaTCAATCCATCATTCAGTTATTTATTGCCTTATCTGACTCAAACTCAGCCAGAGCTTCAGCACAGCAACATCTCTAACCTGATCCTGATCCATATTTACAGCACAGCAGACCACAGCTCTCTCTTTATATGATAAAAGTCCTCTGATCCACGACTCCAAGCAGGTTGAGAGGAGATCCCTTTAACGATATTGAGCTGTTACATTGATTTGATTTAgaatagtgtttttattttatttatttatgtagaatatataaaaaatgtaata

Function

NR:

description
PREDICTED: tissue-type plasminogen activator isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01343 PLAT; tissue plasminogen activator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670541.1 True 2506 mRNA 0.51 15 35198480 35216765

Neighbor

gene id symbol gene type direction distance location
LOC103040650 NA coding downstream 8523 35178158 ~ 35189957 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 22519 35135751 ~ 35175961 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding downstream 67534 35115510 ~ 35130946 (-)
serpind1 serpind1,LOC107738496,LOC107698014,LOC107560052,LOC107671000,LOC107722856,LOC107559590 coding downstream 137481 35055601 ~ 35060999 (-)
LOC103046374 cox5b,LOC103046374,LOC107602047,LOC108426657,LOC106567989,LOC106563057,LOC107558099 coding downstream 209217 34986073 ~ 34989263 (-)
vdac3 vdac3,LOC107754399,LOC107560056 coding upstream 30028 35246793 ~ 35259232 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding upstream 63058 35279823 ~ 35284290 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding upstream 93924 35310689 ~ 35315573 (-)
LOC103031304 zdhhc12 coding upstream 99517 35316282 ~ 35320788 (-)
LOC111192733 NA coding upstream 150884 35367649 ~ 35370960 (-)
G56580 NA non-coding downstream 21501 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 115207 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 126721 35071316 ~ 35071759 (-)
G56548 NA non-coding downstream 162206 35035935 ~ 35036274 (-)
G56532 NA non-coding downstream 207345 34971249 ~ 34991135 (-)
G56600 polb non-coding upstream 49128 35265893 ~ 35272290 (-)
G56602 NA non-coding upstream 59182 35275947 ~ 35278890 (-)
G56620 NA non-coding upstream 134060 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 168013 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 221068 35437833 ~ 35440647 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 90060 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2020830 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2396320 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3458259 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3507672 31635481 ~ 31690808 (-)
acaa2 acaa2,LOC107671002 other upstream 68657 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 79576 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 105220 35321985 ~ 35332434 (-)
G56638 NA other upstream 204065 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 550005 35766770 ~ 35767677 (-)

Expression


Co-expression Network