vdac3 (vdac3,LOC107754399,LOC107560056)


Basic Information

Item Value
gene id vdac3
gene name vdac3,LOC107754399,LOC107560056
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35246793 ~ 35259232 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670543.1
GTGAGAGGAGTGCGCATGCGCGGCGCGTCGTGCCCTCTCCGCCTGTTTCTCCTTCAGTGTGTCCTCCTCTCTCAGAACCGGAGTCCCGCAGCCCGGAGACCGGAGACCAGAGCACGAGCGATACCTGAGAAAGGAGCAAAGCAGGGTTTAAAGACGGACAGAATGGAGGACGTGAAGAAAGGGAAGGAGACGCAGATGAAAGAGAGTAAGCCCTGCTCTCACTGCCAGACCAAGAAGTGCGcTAGCATGGCCGTCCCTCCTGCGTACGCTGACCTCGGCAAATCCGCCAAAGATATCTTCAGCAAGGGATATGGATTCGGGACGGTTAAACTGGACCTCAAGACCAAATCTCAGAGTGGAGTCATGgagTTCTCCACCGGTGGCTCCAgtaacacagacacagggaaaGCGTCGGGGAATCTGGAGACCAAGTATAAAGTGAAGGATCTTGGTCTGAACTTTAATCAGAAATGGAACACTGATAACACTCTGACCACCGAGATCTCCATGGAGGACCAGCTGGCTAAGGGTCTGAAGCTGGGTCTGGACACCTCCTTTGTTCCCAACACCGGgaAGAAGAGTGCTAAGCTGAAGACGGGTTATAAGCGGGAGTATATGAATGTAGGTTGTGATATAGATTTTGATCTGGCGGGTCCTACGGTTCACGCTGCAGCAGTGCTGGGGTACGAGGGGTGGCTCGCCGGGTATCAGATGGCGTTTGATacggcaaaatccaaactggcCCAGAACAACTTCGCTCTGGGATACAAGGCTGGAGATTTCCAGCTGCACACCAACGTTAATGATGGAACGGAGTTTGGAGGCTCTATCTATCAGAAGGTGAACAGTGAGCTGGAGACGGCGGTGAATCTGGCGTGGACGGCCGGCAGCAACAACACGCGCTTCGGCATCGCCGCTAAGTACCAACTCGACAAGGACGCGTCCGTCTCTgCTAAAGTAAACAATGCTAGTCTGGTTGGAGTGGGATACACACAGGCTCTGCGACCAGgtgtgaAGCTCACTCTCTCTGCTCTGATTGATGCTAAGAACTTCAACGCTGGGGGGCACAAGGTGGGGATGGGCTTCGAGCTGGAggtgtgaagagagagagagagagatcagcagcagcaggaagacGAGAGGAACAGACAGAAACCACGACACGACCGATCATACAGACCTCCACCCTCAGACTCCACCTTTATAGCTGCATCTTCAGGTCTCTGACTCTCAGTCTACTCTACAACAGGGTTCAGACTGCAGTCAGTCACGTGACCGGCGCTGCACCCCCCCTCACACGTCTCACCATCCACTCCACCTTCTGATTATAAACGTGATTTTAGTTCCTCTGTCCTGAAGGTTTAaggttcttttataaagctgtgTGATGTTGGATTGTTTAGGATGATGTTCGTGTGTTTAATTTCAAATCTGATCACAGCAGATTCACTGTTCAGTATCAGACAAGATAACAGTCTGGTGTGAGTGAATCTTCAGTtagagctgcacgatattggggaaaaattacaataaattgtgatattttgttgttctgtgATTTAAATTTTGCATTGTTCCTACATGtcacaatattttgagtaaaataaattatatttggtCGATATTTCTTTGTATTGAgcagcaaaaaaagtaaaaaaaaagtgtaataacATTGCACATTGGGATATCGATACTAAAGCGATTTATCGCGCAGCTCTATCTTCAGTATCCTGTTGTTTAGAGAACAAAGTTTAAGGGAATCCTCATCTGAAAAACGTCCAACCCCGTCTCTTCATATCTCTGTGTGTAAAAATCTTTTGattctttgtcatttttattgccaaacacaaaaaaacacacattatttaATCATCATTTCTTCACTGGCCCGTCTGTGTTTCAGTAGGAGTTGGAGAGATAAAGGGAGCGTTTCCTCtttatgtttttctctttttcttcatgTTTAATTCTGTGTTGTGCTGGATGATGACTAGATTTAAGAAATTGATAAACTGATCTGTTCTGGAACCCAATAAAGAGAGGAACGATGA
>XM_022670544.1
GTGAGAGGAGTGCGCATGCGCGGCGCGTCGTGCCCTCTCCGCCTGTTTCTCCTTCAGTGTGTCCTCCTCTCTCAGAACCGGAGTCCCGCAGCCCGGAGACCGGAGACCAGAGCACGAGCGATACCTGAGAAAGGAGCAAAGCAGGGTTTAAAGACGGACAGAATGGAGGACGTGAAGAAAGGGAAGGAGACGCAGATGAAAGAGAGTAAGCCCTGCTCTCACTGCCAGACCAAGAAGTGCGcTAGCATGGCCGTCCCTCCTGCGTACGCTGACCTCGGCAAATCCGCCAAAGATATCTTCAGCAAGGGATATGGATTCGGGACGGTTAAACTGGACCTCAAGACCAAATCTCAGAGTGGAGTCgagTTCTCCACCGGTGGCTCCAgtaacacagacacagggaaaGCGTCGGGGAATCTGGAGACCAAGTATAAAGTGAAGGATCTTGGTCTGAACTTTAATCAGAAATGGAACACTGATAACACTCTGACCACCGAGATCTCCATGGAGGACCAGCTGGCTAAGGGTCTGAAGCTGGGTCTGGACACCTCCTTTGTTCCCAACACCGGgaAGAAGAGTGCTAAGCTGAAGACGGGTTATAAGCGGGAGTATATGAATGTAGGTTGTGATATAGATTTTGATCTGGCGGGTCCTACGGTTCACGCTGCAGCAGTGCTGGGGTACGAGGGGTGGCTCGCCGGGTATCAGATGGCGTTTGATacggcaaaatccaaactggcCCAGAACAACTTCGCTCTGGGATACAAGGCTGGAGATTTCCAGCTGCACACCAACGTTAATGATGGAACGGAGTTTGGAGGCTCTATCTATCAGAAGGTGAACAGTGAGCTGGAGACGGCGGTGAATCTGGCGTGGACGGCCGGCAGCAACAACACGCGCTTCGGCATCGCCGCTAAGTACCAACTCGACAAGGACGCGTCCGTCTCTgCTAAAGTAAACAATGCTAGTCTGGTTGGAGTGGGATACACACAGGCTCTGCGACCAGgtgtgaAGCTCACTCTCTCTGCTCTGATTGATGCTAAGAACTTCAACGCTGGGGGGCACAAGGTGGGGATGGGCTTCGAGCTGGAggtgtgaagagagagagagagagatcagcagcagcaggaagacGAGAGGAACAGACAGAAACCACGACACGACCGATCATACAGACCTCCACCCTCAGACTCCACCTTTATAGCTGCATCTTCAGGTCTCTGACTCTCAGTCTACTCTACAACAGGGTTCAGACTGCAGTCAGTCACGTGACCGGCGCTGCACCCCCCCTCACACGTCTCACCATCCACTCCACCTTCTGATTATAAACGTGATTTTAGTTCCTCTGTCCTGAAGGTTTAaggttcttttataaagctgtgTGATGTTGGATTGTTTAGGATGATGTTCGTGTGTTTAATTTCAAATCTGATCACAGCAGATTCACTGTTCAGTATCAGACAAGATAACAGTCTGGTGTGAGTGAATCTTCAGTtagagctgcacgatattggggaaaaattacaataaattgtgatattttgttgttctgtgATTTAAATTTTGCATTGTTCCTACATGtcacaatattttgagtaaaataaattatatttggtCGATATTTCTTTGTATTGAgcagcaaaaaaagtaaaaaaaaagtgtaataacATTGCACATTGGGATATCGATACTAAAGCGATTTATCGCGCAGCTCTATCTTCAGTATCCTGTTGTTTAGAGAACAAAGTTTAAGGGAATCCTCATCTGAAAAACGTCCAACCCCGTCTCTTCATATCTCTGTGTGTAAAAATCTTTTGattctttgtcatttttattgccaaacacaaaaaaacacacattatttaATCATCATTTCTTCACTGGCCCGTCTGTGTTTCAGTAGGAGTTGGAGAGATAAAGGGAGCGTTTCCTCtttatgtttttctctttttcttcatgTTTAATTCTGTGTTGTGCTGGATGATGACTAGATTTAAGAAATTGATAAACTGATCTGTTCTGGAACCCAATAAAGAGAGGAACGATGA
>XM_022670545.1
CGCGTCGTGCCCTCTCCGCCTGTTTCTCCTTCAGTGTGTCCTCCTCTCTCAGAACCGGAGTCCCGCAGCCCGGAGACCGGAGACCAGAGCACGcTAGCATGGCCGTCCCTCCTGCGTACGCTGACCTCGGCAAATCCGCCAAAGATATCTTCAGCAAGGGATATGGATTCGGGACGGTTAAACTGGACCTCAAGACCAAATCTCAGAGTGGAGTCATGgagTTCTCCACCGGTGGCTCCAgtaacacagacacagggaaaGCGTCGGGGAATCTGGAGACCAAGTATAAAGTGAAGGATCTTGGTCTGAACTTTAATCAGAAATGGAACACTGATAACACTCTGACCACCGAGATCTCCATGGAGGACCAGCTGGCTAAGGGTCTGAAGCTGGGTCTGGACACCTCCTTTGTTCCCAACACCGGgaAGAAGAGTGCTAAGCTGAAGACGGGTTATAAGCGGGAGTATATGAATGTAGGTTGTGATATAGATTTTGATCTGGCGGGTCCTACGGTTCACGCTGCAGCAGTGCTGGGGTACGAGGGGTGGCTCGCCGGGTATCAGATGGCGTTTGATacggcaaaatccaaactggcCCAGAACAACTTCGCTCTGGGATACAAGGCTGGAGATTTCCAGCTGCACACCAACGTTAATGATGGAACGGAGTTTGGAGGCTCTATCTATCAGAAGGTGAACAGTGAGCTGGAGACGGCGGTGAATCTGGCGTGGACGGCCGGCAGCAACAACACGCGCTTCGGCATCGCCGCTAAGTACCAACTCGACAAGGACGCGTCCGTCTCTgCTAAAGTAAACAATGCTAGTCTGGTTGGAGTGGGATACACACAGGCTCTGCGACCAGgtgtgaAGCTCACTCTCTCTGCTCTGATTGATGCTAAGAACTTCAACGCTGGGGGGCACAAGGTGGGGATGGGCTTCGAGCTGGAggtgtgaagagagagagagagagatcagcagcagcaggaagacGAGAGGAACAGACAGAAACCACGACACGACCGATCATACAGACCTCCACCCTCAGACTCCACCTTTATAGCTGCATCTTCAGGTCTCTGACTCTCAGTCTACTCTACAACAGGGTTCAGACTGCAGTCAGTCACGTGACCGGCGCTGCACCCCCCCTCACACGTCTCACCATCCACTCCACCTTCTGATTATAAACGTGATTTTAGTTCCTCTGTCCTGAAGGTTTAaggttcttttataaagctgtgTGATGTTGGATTGTTTAGGATGATGTTCGTGTGTTTAATTTCAAATCTGATCACAGCAGATTCACTGTTCAGTATCAGACAAGATAACAGTCTGGTGTGAGTGAATCTTCAGTtagagctgcacgatattggggaaaaattacaataaattgtgatattttgttgttctgtgATTTAAATTTTGCATTGTTCCTACATGtcacaatattttgagtaaaataaattatatttggtCGATATTTCTTTGTATTGAgcagcaaaaaaagtaaaaaaaaagtgtaataacATTGCACATTGGGATATCGATACTAAAGCGATTTATCGCGCAGCTCTATCTTCAGTATCCTGTTGTTTAGAGAACAAAGTTTAAGGGAATCCTCATCTGAAAAACGTCCAACCCCGTCTCTTCATATCTCTGTGTGTAAAAATCTTTTGattctttgtcatttttattgccaaacacaaaaaaacacacattatttaATCATCATTTCTTCACTGGCCCGTCTGTGTTTCAGTAGGAGTTGGAGAGATAAAGGGAGCGTTTCCTCtttatgtttttctctttttcttcatgTTTAATTCTGTGTTGTGCTGGATGATGACTAGATTTAAGAAATTGATAAACTGATCTGTTCTGGAACCCAATAAAGAGAGGAACGATGA
>XM_022670546.1
ATGCGCGGCGCGTCGTGCCCTCTCCGCCTGTTTCTCCTTCAGTGTGTCCTCCTCTCTCAGAACCGGAGTCCCGCAGCCCGGAGACCGGAGACCAGAGCACGcTAGCATGGCCGTCCCTCCTGCGTACGCTGACCTCGGCAAATCCGCCAAAGATATCTTCAGCAAGGGATATGGATTCGGGACGGTTAAACTGGACCTCAAGACCAAATCTCAGAGTGGAGTCgagTTCTCCACCGGTGGCTCCAgtaacacagacacagggaaaGCGTCGGGGAATCTGGAGACCAAGTATAAAGTGAAGGATCTTGGTCTGAACTTTAATCAGAAATGGAACACTGATAACACTCTGACCACCGAGATCTCCATGGAGGACCAGCTGGCTAAGGGTCTGAAGCTGGGTCTGGACACCTCCTTTGTTCCCAACACCGGgaAGAAGAGTGCTAAGCTGAAGACGGGTTATAAGCGGGAGTATATGAATGTAGGTTGTGATATAGATTTTGATCTGGCGGGTCCTACGGTTCACGCTGCAGCAGTGCTGGGGTACGAGGGGTGGCTCGCCGGGTATCAGATGGCGTTTGATacggcaaaatccaaactggcCCAGAACAACTTCGCTCTGGGATACAAGGCTGGAGATTTCCAGCTGCACACCAACGTTAATGATGGAACGGAGTTTGGAGGCTCTATCTATCAGAAGGTGAACAGTGAGCTGGAGACGGCGGTGAATCTGGCGTGGACGGCCGGCAGCAACAACACGCGCTTCGGCATCGCCGCTAAGTACCAACTCGACAAGGACGCGTCCGTCTCTgCTAAAGTAAACAATGCTAGTCTGGTTGGAGTGGGATACACACAGGCTCTGCGACCAGgtgtgaAGCTCACTCTCTCTGCTCTGATTGATGCTAAGAACTTCAACGCTGGGGGGCACAAGGTGGGGATGGGCTTCGAGCTGGAggtgtgaagagagagagagagagatcagcagcagcaggaagacGAGAGGAACAGACAGAAACCACGACACGACCGATCATACAGACCTCCACCCTCAGACTCCACCTTTATAGCTGCATCTTCAGGTCTCTGACTCTCAGTCTACTCTACAACAGGGTTCAGACTGCAGTCAGTCACGTGACCGGCGCTGCACCCCCCCTCACACGTCTCACCATCCACTCCACCTTCTGATTATAAACGTGATTTTAGTTCCTCTGTCCTGAAGGTTTAaggttcttttataaagctgtgTGATGTTGGATTGTTTAGGATGATGTTCGTGTGTTTAATTTCAAATCTGATCACAGCAGATTCACTGTTCAGTATCAGACAAGATAACAGTCTGGTGTGAGTGAATCTTCAGTtagagctgcacgatattggggaaaaattacaataaattgtgatattttgttgttctgtgATTTAAATTTTGCATTGTTCCTACATGtcacaatattttgagtaaaataaattatatttggtCGATATTTCTTTGTATTGAgcagcaaaaaaagtaaaaaaaaagtgtaataacATTGCACATTGGGATATCGATACTAAAGCGATTTATCGCGCAGCTCTATCTTCAGTATCCTGTTGTTTAGAGAACAAAGTTTAAGGGAATCCTCATCTGAAAAACGTCCAACCCCGTCTCTTCATATCTCTGTGTGTAAAAATCTTTTGattctttgtcatttttattgccaaacacaaaaaaacacacattatttaATCATCATTTCTTCACTGGCCCGTCTGTGTTTCAGTAGGAGTTGGAGAGATAAAGGGAGCGTTTCCTCtttatgtttttctctttttcttcatgTTTAATTCTGTGTTGTGCTGGATGATGACTAGATTTAAGAAATTGATAAACTGATCTGTTCTGGAACCCAATAAAGAGAGGAACGATGA

Function

symbol description
vdac3 Predicted to enable voltage-gated anion channel activity. Acts upstream of or within fin regeneration. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Is expressed in adaxial cell; musculature system; nervous system; somite; and trigeminal placode. Orthologous to human VDAC3 (voltage dependent anion channel 3).

NR:

description
voltage-dependent anion-selective channel protein 2-like isoform X2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15041 VDAC3; voltage-dependent anion channel protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670543.1 True 2051 mRNA 0.47 11 35246793 35259232
XM_022670544.1 False 2048 mRNA 0.47 10 35246793 35259232
XM_022670545.1 False 1903 mRNA 0.46 10 35246793 35259209
XM_022670546.1 False 1908 mRNA 0.47 9 35246793 35259217

Neighbor

gene id symbol gene type direction distance location
plat NA coding downstream 30028 35198480 ~ 35216765 (-)
LOC103040650 NA coding downstream 56836 35178158 ~ 35189957 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 70832 35135751 ~ 35175961 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding downstream 115847 35115510 ~ 35130946 (-)
serpind1 serpind1,LOC107738496,LOC107698014,LOC107560052,LOC107671000,LOC107722856,LOC107559590 coding downstream 185794 35055601 ~ 35060999 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding upstream 20591 35279823 ~ 35284290 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding upstream 51457 35310689 ~ 35315573 (-)
LOC103031304 zdhhc12 coding upstream 57050 35316282 ~ 35320788 (-)
LOC111192733 NA coding upstream 108417 35367649 ~ 35370960 (-)
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding upstream 131576 35390808 ~ 35395244 (-)
G56580 NA non-coding downstream 69814 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 163520 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 175034 35071316 ~ 35071759 (-)
G56548 NA non-coding downstream 210519 35035935 ~ 35036274 (-)
G56532 NA non-coding downstream 255658 34971249 ~ 34991135 (-)
G56600 polb non-coding upstream 6661 35265893 ~ 35272290 (-)
G56602 NA non-coding upstream 16715 35275947 ~ 35278890 (-)
G56620 NA non-coding upstream 91593 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 125546 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 178601 35437833 ~ 35440647 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 138373 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2069143 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2444633 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3506572 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3555985 31635481 ~ 31690808 (-)
acaa2 acaa2,LOC107671002 other upstream 26190 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 37109 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 62753 35321985 ~ 35332434 (-)
G56638 NA other upstream 161598 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 507538 35766770 ~ 35767677 (-)

Expression


Co-expression Network