acaa2 (acaa2,LOC107671002)


Basic Information

Item Value
gene id acaa2
gene name acaa2,LOC107671002
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35285422 ~ 35293421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670548.1
AAAACAGCTGTGGCGGTCCGCTCCTCAGTAGGTGAAAGGTTGTCTGCTGAGTGTCCGCGAGCTGTGTTTTATACTGGGGTCCTGAGACTGACCTTCCTGCACTTAATATAACTATAATCACCATTATGTCGCTTTTAAGAGGTGTTTTCATCGTTTCAGCTAAGAGGACTCCGTTTGGGACGTACGGTGGCGTTCTCAAAGACCACACTGCCACAGATTTGGCTGAACATGCGGCTAAAGCTGCCCTCGCTGCTGGAAAAGTTGCTCCAGAGATCGTCGATAGTGTGATTGTGGGAAACGTCATGCAGAGTTCTGCAGATGCTGCATATATTGCGCGTCATGTGGGACTGAGGTGTGGGGTGCCGATACCGACGCCGGCACTGACGGTAAACCGTCTCTGTGGATCAGGATTCCAGTCCATCATCAACGGAGCTCACgaGATCTGTCTTAAAGAGTCAGAGGTTGTACTGTGTGGAGGGTCAGAGAGTATGAGCCAGGCCCCGTACGCTGCTCGCAACATCAGATTTGGCACCAGACTTGGACTTGACCTGAAGcttGAGGACACTCTGTGGGCGGGGCTCACTGACCTCCACATAAAGACACCGATGGGCGTCACAGCAGAGAACCTGGCAGAGAAATATCAGATCAGCCGGGAGGACTGTGATCAGTACGCCTATCAGACTCAGCAGAGATGGAAAGCAGCTCACGAGGCTGGATACTACACCGCTGAGATCGAGCCCATCGAGGTGAAGGGCAAGAAGGGCAAAGTGCCCATGACCCACGACGAGCACCCCCGTCCCCAGACCACGCTGGAGCAGATGGCCAAGCTGCCGTCCGTCTTCAAAAAAGGAGGAACAGTTACTGCAGCTAATGCTTCTGGTGTGTCAGATGGTGCGGGAGCCGTGGTTATAGCCAGTGAGGATGCTCTGAAGGAGCACAAGCTCACCCCATTGGCTAGAATCGTGGCCTATCACGCCTCAGGCTGTGATCCCAGTATAATGGGCATTGGTCCTGTACCTGCTATAACTGCGGCTCTGAAGAAGGCGGGACTCTCACTGAAAGACATGGACCTGGTGGAGGTGAATGAAGCTTTTGCTCCTCAGTATTTAGCGGTTGCTAAAGCTCTGGGACTGGACCCAGCGAAGAGTAACGTTAACGGAGGGGCTATTGCTCTCGGACATCCACTCGGAGCCTCTGGAACCAGAATCATCGCACACTTAGTGCATGAGCTCAGACGCCGCGGCGGCCGGTATGCTGTGGGCTCAGCCTGTATCGGAGGAGGACAGGGCATTGCCATAATCTtggaaaacatgaaataaacagaGCGTTAATCATGTATATGTTCATACAGACATCATGTTTAGACACCATGATTAAAGAACACTCCACAGAACTCCGCCCACCTGCCAATCATCATTAAATCACCATGATCTTCAAATAACAtgcatatgaaaaaaaaaacatctttaataataaatctctgagaactcttaatgtgtttataatgtGACTCTGATGTCAGGGACTGAGATACGCTGAGAATCAGATTATTTCCTGACTGTTGCTTTATAAAAACAGaactcagtgtttttattaagtGTGTAGCAGGGTGTGACATccccaaaatatatttaacagtgGAATCTTTTTATTCTTTGTGATCTATCAAAAAATCTGTAGTGATTCTTTATCATTAAACCATTGATTACCTTTGCTCCGTTACCGAAAGTGATCTTAAGGTCTGAATCATGTTTACTGGGGGAGCGAGTGCTGTGTGTGATGCTGGCTCAACCATTTTGCCAAATTGCTATAAAACCTTGTTTGTGCACAGaatgtaaaagagaaaaaactgaatgtaaaatgttaaatatatcacTTCTCTTGTTGCCAGGTTGTCTCAGACCTTGTGGTTCTGTTTGAATTgtgtgacattaaaaaaaactttgaacaCAAATTAATCCTGTTAACAAAACTACAGAGTCTGGGGATGCATCAGcgctttttttagttttagtgctGTAAATCTCGTAAAGTTCTtcagtgtggaatatggagctacactagtgttTATTTCCTCCTTCAAAcctctcagttaaactcagcaACACATCACATTACAATATTCCCATTTAAAAGCATCAAAAATACCCTGAGATTATTTAGtacatggtaaaaataaaaatcggGATCTTTTCTGCCAGAGCTAAACCACACTTCACTATTGTTATGGTCTTCCTCCCGAacagtatttttatacataaaaatcacatttaatcacaAGTAATCAGTAGAAATACTCCAACATTAACTCTAAGTTGTTCCACTGAAAGGTTTTCATTCTtcttctgtaaaaaataaatgcagttttgaaaatgtaaa
>XR_002650079.1
AAAACAGCTGTGGCGGTCCGCTCCTCAGTAGGTGAAAGGTTGTCTGCTGAGTGTCCGCGAGCTGTGTTTTATACTGGGGTCCTGAGACTGACCTTCCTGCACTTAATATAACTATAATCACCATTATGTCGCTTTTAAGAGGTGTTTTCATCGTTTCAGCTAAGAGGACTCCGTTTGGGACGTACGGTGGCGTTCTCAAAGACCACACTGCCACAGATTTGGCTGAACATGCGGCTAAAGCTGCCCTCGCTGCTGGAAAAGTTGCTCCAGAGATCGTCGATAGTGTGATTGTGGGAAACGTCATGCAGAGTTCTGCAGATGCTGCATATATTGCGCGTCATGTGGGACTGAGGTGTGGGGTGCCGATACCGACGCCGGCACTGACGGTAAACCGTCTCTGTGGATCAGGATTCCAGTCCATCATCAACGGAGCTCACgaGATCTGTCTTAAAGAGTCAGAGGTTGTACTGTGTGGAGGGTCAGAGAGTATGAGCCAGGCCCCGTACGCTGCTCGCAACATCAGATTTGGCACCAGACTTGGACTTGACCTGAAGcttGAGGACACTCTGTGGGCGGGGCTCACTGACCTCCACATAAAGACACCGATGGGCGTCACAGCAGAGAACCTGGCAGAGAAATATCAGATCAGCCGGGAGGACTGTGATCAGTACGCCTATCAGACTCAGCAGAGATGGAAAGCAGCTCACGAGGCTGGATACTACACCGCTGAGATCGAGCCCATCGAGGTGAAGGGCAAGAAGGGCAAAGTGCCCATGACCCACGACGAGCACCCCCGTCCCCAGACCACGCTGGAGCAGATGGCCAAGCTGCCGTCCGTCTTCAAAAAAGGAGGAACAGTTACTGCAGCTAATGCTTCTGGTGTGTCAGATGGTGCGGGAGCCGTGGTTATAGCCAGTGAGGATGCTCTGAAGGAGCACAAGCTCACCCCATTGGCTAGAATCGTGGCCTATCACGCCTCAGGCTGTGATCCCAGTATAATGGGCATTGGTCCTGTACCTGCTATAACTGCGGCTCTGAAGAAGGCGGGACTCTCACTGAAAGACATGGACCTGGTGGAGGTGAATGAAGCTTTTGCTCCTCAGTATTTAGCGGTTGCTAAAGCTCTGGGACTGGACCCAGCGAAGAGTAACGTTAACGGAGGGGCTATTGCTCTCGGACATCCACTCGGAGCCTCTGGAACCAGAATCATCGCACACTTAGTGCATGAGCTCAGACGCCGCGGCGGCCGGTATGCTGTGGGCTCAGCCTGTATCGGAGGAGGACAGGGCATTGCCATAATCTtggaaaacatgaaataaacagaGCGTTAATCATGTATATGTTCATACAGACATCATGTTTAGACACCATGATTAAAGAACACTCCACAGAACTCCGCCCACCTGCCAATCATCATTAAATCACCATGATCTTCAAATAACAtgcatatgaaaaaaaaaacatctttaataataaatctctgagaactcttaatgtgtttataatgTGAATTgtgtgacattaaaaaaaactttgaacaCAAATTAATCCTGTTAACAAAACTACAGAGTCTGGGGATGCATCAGcgctttttttagttttagtgctGTAAATCTCGTAAAGTTCTtcagtgtggaatatggagctacactagtgttTATTTCCTCCTTCAAAcctctcagttaaactcagcaACACATCACATTACAATATTCCCATTTAAAAGCATCAAAAATACCCTGAGATTATTTAGtacatggtaaaaataaaaatcggGATCTTTTCTGCCAGAGCTAAACCACACTTCACTATTGTTATGGTCTTCCTCCCGAacagtatttttatacataaaaatcacatttaatcacaAGTAATCAGTAGAAATACTCCAACATTAACTCTAAGTTGTTCCACTGAAAGGTTTTCATTCTtcttctgtaaaaaataaatgcagttttgaaaatgtaaatccTTGTGTTCTGTTTTCCAATAAAGAGAGcaagtgcagtgaaatgtaa

Function

symbol description
acaa2 Predicted to enable acetyl-CoA C-acetyltransferase activity. Acts upstream of or within lymph vessel development and regulation of fatty acid beta-oxidation. Predicted to be active in mitochondrion. Orthologous to human ACAA2 (acetyl-CoA acyltransferase 2).

NR:

description
PREDICTED: 3-ketoacyl-CoA thiolase, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function

KEGG:

id description
K07508 ACAA2; acetyl-CoA acyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670548.1 True 2379 mRNA 0.45 10 35285471 35293421
XR_002650079.1 False 2018 misc_RNA 0.46 11 35285422 35293421

Neighbor

gene id symbol gene type direction distance location
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 1132 35279823 ~ 35284290 (-)
vdac3 vdac3,LOC107754399,LOC107560056 coding downstream 26190 35246793 ~ 35259232 (-)
plat NA coding downstream 68657 35198480 ~ 35216765 (-)
LOC103040650 NA coding downstream 95465 35178158 ~ 35189957 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 109461 35135751 ~ 35175961 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding upstream 17268 35310689 ~ 35315573 (-)
LOC103031304 zdhhc12 coding upstream 22861 35316282 ~ 35320788 (-)
LOC111192733 NA coding upstream 74228 35367649 ~ 35370960 (-)
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding upstream 97387 35390808 ~ 35395244 (-)
pola2 pola2,LOC107710902 coding upstream 662682 35956103 ~ 35964161 (-)
G56602 NA non-coding downstream 6532 35275947 ~ 35278890 (-)
G56600 polb non-coding downstream 13132 35265893 ~ 35272290 (-)
G56580 NA non-coding downstream 108443 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 202149 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 213663 35071316 ~ 35071759 (-)
G56620 NA non-coding upstream 57404 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 91357 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 144412 35437833 ~ 35440647 (-)
G56656 NA non-coding upstream 250290 35543711 ~ 35543995 (-)
G56678 NA non-coding upstream 259415 35552836 ~ 35553987 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 177002 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2107772 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2483262 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3545201 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3594614 31635481 ~ 31690808 (-)
c6h22orf39 NA other upstream 2920 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 28564 35321985 ~ 35332434 (-)
G56638 NA other upstream 127409 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 473349 35766770 ~ 35767677 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other upstream 537791 35831212 ~ 35867084 (-)

Expression


Co-expression Network