LOC103038477 (fam102aa,LOC108430372,LOC107752986,LOC107671017,LOC107699668,LOC105891604,LOC107754406)


Basic Information

Item Value
gene id LOC103038477
gene name fam102aa,LOC108430372,LOC107752986,LOC107671017,LOC107699668,LOC105891604,LOC107754406
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35341479 ~ 35365205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670552.1
agaacagggTCTGTAAAGCTGAACACTCAGAAAtctgtgctgtttctccacagaCTAAATCACTATTTAAACACTGGAAATGAACGAGTTAACGCGAATTAACGCGAGTTAACGCAGTTCTGGGAGCAGTGTGTAGATCTGCTGTATCAGAGGATTACTttaatcaaccggagatccaggATCTGGATCCGATTCTctcagagaaaagagaaaaggagagagagagagagagagagagagagagagagagaactctgGAgTAAAACCCTGCTGAGCTTCTCTGAGGAACGTTAGATTATAAGCTTTTTCAGTTAAAACCCCAAATGAATCAGAAGGattgtgtttttaatatcaGGCAGGAGAATGGGTCGACCCTGaatcttcattttcattgacgGTCACAGtttagacacaaacacacacacacacacacacacacacacttcattagAGCCGTGGGATCTGCTGAAGCTCTTCAGTCGATGGCGTTTttagtgaagaagaagaaatttaAGTTTCAGACACACTTTACTCTGGAGGAACTGACGGCTGTGCCCTTCGTAAACGGAGTTCTGTTCTGTAAGATCCGGCTGCTGGATGGAGGAGACTTCGCCGCATCATCCTCCAGAGAGGAGGTCCGGGAGAACTCGGTCCGCTGGAGGAAGAGATTCTCCTTCGTGTGCAAGATGAGCGCCAATCCCAACACCGGCGTTCTGGACCCCTGCATCTGCAGAGTCTCTGTGAGGAAGGAACTCAAAGGAGGAAAAGCTTATTCAAAGcTGGGCTTTGCTGATCTGAACATGGCGGAGTTTGCTGGATCAGGCTCCACAGTGCGCTGCTCTCTACTCGAAGGCTACAACACCAAGAACACCCGGCAGGACAACTCCATCCTAAAGGTGACCATAGAGATGACCCTCTTATCTGCAGACCCCTGTTTTAAAgcTCCTCCCAGCACGGCTAAGAGTATCTCAGTTCCGGGTCGAGAGCCGTCTCTGCACCTCGACCGTAAAGGAGAGGGGACAGCGGTGGGTTCAGCGTCCAAACCCAGACCCTCCATCCTCAGTTCAGGTCTGCCGGAGGAGGGTGATCAGAGTCGGGCGAACGCAGACGAGACCTTTCACACCGGGCACTCCCGTAACTCCAGCTACGCCAGTCAACAGAGCAAGCTGTCGGGTGTGTGTTCagGCTACAGTACAGAACACTCCTGCTCATCCAGTCTTTCTGACCTGACGCACCGCAGGAACACCTCCACAGGAAGCAGCGTCAGCGCTGACGTCCCCTCAGAGAGCGACTGTCGTCCTGAGAGACCCCAGCGTCCCCCGCGGCCCGTCCTACCGTCCAGCAGACCCTTACGGAGGAAGCAGGATTCTGTGGAGGATCAGCCCACCTGGGTAAACGACACTCGGATCGATGCTGACGACGTCGTGGAGAAGATCGTTCAGAGTCAGAACTTCGCTGATAACAGTAATAATGAAGACAGTAACCTGAGACTGTTCGTCAGTAGAGATGGAACTACATCATTAAGTGGAATTCAGCTTGGGAACCGgGTCACTGCTGGAGTGTTTGAGCCGGTGGTGATTGAAAGTCATTAGAAGCTTCTCGTCCACCACTGAAGACTTGTGTTCACCACTGGAGGATGAGTTCCAGTACGAGTACACTCAAACCACTACTGTGCACCAGAGCACCACAGCTTCTCACACTTGActaagttttttattttcactattAAATCTGTTCACTATCAAGTCTGTTGATGCAGACAGAAAGTGAGGGATGTTTTATTAGGGCTGTGAAATCGACACTCAGTGTAACTTTTTAAccaaaaagtgctttaaaaacacACGACCACTACCACTGATGAGGTTCATCACCTTAAGCACTATCGTTCtgtgtgtgattattattattatatgtgtttatttgaaCTGGAACGCTCATACAGGTCGAGTTTCTTACTGGGAAAAGTCGGGAGAGCCCTAAACAGCCCAGAGTATTAAAATcagtagtattatacagtttattatcacttattttaactaatttttaACCCATCCCTGCTGATggtgtagcattgccgagtagcatcacaacgctaacgctcggagaaaagagcagcgactctggtggttctgatacagca
>XM_022670554.1
agaacagggTCTGTAAAGCTGAACACTCAGAAAtctgtgctgtttctccacagaCTAAATCACTATTTAAACACTGGAAATGAACGAGTTAACGCGAATTAACGCGAGTTAACGCAGTTCTGGGAGCAGTGTGTAGATCTGCTGTATCAGAGGATTACTttaatcaaccggagatccaggATCTGGATCCGATTCTctcagagaaaagagaaaaggagagagagagagagagagagagagagagagagagaactctgGAgTAAAACCCTGCTGAGCTTCTCTGAGGAACGTTAGATTATAAGCTTTTTCAGTTAAAACCCCAAATGAATCAGAAGGattgtgtttttaatatcaGGCAGGAGAATGGGTCGACCCTGaatcttcattttcattgacgGTCACAGtttagacacaaacacacacacacacacacacacacacacttcattagAGCCGTGGGATCTGCTGAAGCTCTTCAGTCGATGGCGTTTttagtgaagaagaagaaatttaAGTTTCAGACACACTTTACTCTGGAGGAACTGACGGCTGTGCCCTTCGTAAACGGAGTTCTGTTCTGTAAGATCCGGCTGCTGGATGGAGGAGACTTCGCCGCATCATCCTCCAGAGAGGAGGTCCGGGAGAACTCGGTCCGCTGGAGGAAGAGATTCTCCTTCGTGTGCAAGATGAGCGCCAATCCCAACACCGGCGTTCTGGACCCCTGCATCTGCAGAGTCTCTGTGAGGAAGGAACTCAAAGGAGGAAAAGCTTATTCAAAGcTGGGCTTTGCTGATCTGAACATGGCGGAGTTTGCTGGATCAGGCTCCACAGTGCGCTGCTCTCTACTCGAAGGCTACAACACCAAGAACACCCGGCAGGACAACTCCATCCTAAAGGTGACCATAGAGATGACCCTCTTATCTGCAGACCCCTGTTTTAAAgcTCCTCCCAGCACGGCTAAGAGTATCTCAGTTCCGGGTCGAGAGCCGTCTCTGCACCTCGACCGTAAAGGAGAGGGGACAGCGGTGGGTTCAGCGTCCAAACCCAGACCCTCCATCCTCAGTTCAGGTCTGCCGGAGGAGGGTGATCAGAGTCGGGCGAACGCAGACGAGACCTTTCACACCGGGCACTCCCGTAACTCCAGCTACGCCAGTCAACAGAGCAAGCTGTCGGGCTACAGTACAGAACACTCCTGCTCATCCAGTCTTTCTGACCTGACGCACCGCAGGAACACCTCCACAGGAAGCAGCGTCAGCGCTGACGTCCCCTCAGAGAGCGACTGTCGTCCTGAGAGACCCCAGCGTCCCCCGCGGCCCGTCCTACCGTCCAGCAGACCCTTACGGAGGAAGCAGGATTCTGTGGAGGATCAGCCCACCTGGGTAAACGACACTCGGATCGATGCTGACGACGTCGTGGAGAAGATCGTTCAGAGTCAGAACTTCGCTGATAACAGTAATAATGAAGACAGTAACCTGAGACTGTTCGTCAGTAGAGATGGAACTACATCATTAAGTGGAATTCAGCTTGGGAACCGgGTCACTGCTGGAGTGTTTGAGCCGGTGGTGATTGAAAGTCATTAGAAGCTTCTCGTCCACCACTGAAGACTTGTGTTCACCACTGGAGGATGAGTTCCAGTACGAGTACACTCAAACCACTACTGTGCACCAGAGCACCACAGCTTCTCACACTTGActaagttttttattttcactattAAATCTGTTCACTATCAAGTCTGTTGATGCAGACAGAAAGTGAGGGATGTTTTATTAGGGCTGTGAAATCGACACTCAGTGTAACTTTTTAAccaaaaagtgctttaaaaacacACGACCACTACCACTGATGAGGTTCATCACCTTAAGCACTATCGTTCtgtgtgtgattattattattatatgtgtttatttgaaCTGGAACGCTCATACAGGTCGAGTTTCTTACTGGGAAAAGTCGGGAGAGCCCTAAACAGCCCAGAGTATTAAAATcagtagtattatacagtttattatcacttattttaactaatttttaACCCATCCCTGCTGATggtgtagcattgccgagtagcatcacaacgctaacgctcggagaaaagagcagcgactctggtggttctgatacagca

Function

symbol description
fam102aa Is expressed in female organism. Orthologous to human FAM102A (family with sequence similarity 102 member A).

NR:

description
PREDICTED: protein FAM102A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670552.1 True 2140 mRNA 0.48 13 35341479 35365205
XM_022670554.1 False 2128 mRNA 0.48 13 35341479 35365205

Neighbor

gene id symbol gene type direction distance location
naif1 naif1 coding upstream 1409 35337272 ~ 35340070 (+)
LOC103031612 NA coding upstream 29992 35308625 ~ 35311487 (+)
gle1 gle1,LOC102792584 coding upstream 33033 35299794 ~ 35308446 (+)
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding upstream 45477 35293923 ~ 35296002 (+)
polb polb coding upstream 66858 35265968 ~ 35274621 (+)
LOC103030661 LOC108430371 coding downstream 6706 35371911 ~ 35390172 (+)
LOC103030350 NA coding downstream 40249 35405454 ~ 35437427 (+)
lhx2 lhx2,lhx2b coding downstream 229778 35594983 ~ 35605830 (+)
LOC103029489 NA coding downstream 353744 35718949 ~ 35724427 (+)
ctu1 ctu1 coding downstream 362142 35727347 ~ 35734257 (+)
G56492 zdhhc12,LOC107560045,LOC106955948 non-coding upstream 20706 35319879 ~ 35320773 (+)
G56487 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 non-coding upstream 25924 35312115 ~ 35315555 (+)
G56482 NA non-coding upstream 54007 35285451 ~ 35287472 (+)
G56479 NA non-coding upstream 87477 35253318 ~ 35254002 (+)
LOC111192732 NA non-coding upstream 122697 35217891 ~ 35218782 (+)
G56499 NA non-coding downstream 27097 35392302 ~ 35468036 (+)
G56649 NA non-coding downstream 164699 35529904 ~ 35530234 (+)
G56655 NA non-coding downstream 178492 35543697 ~ 35543990 (+)
G56658 NA non-coding downstream 188176 35553381 ~ 35553752 (+)
G56669 NA non-coding downstream 212317 35577522 ~ 35577822 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 57208 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 68951 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 352194 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 589916 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 829795 34503114 ~ 34511684 (+)
G56504 NA other downstream 55513 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 590899 35956104 ~ 35964510 (+)
G57066 NA other downstream 1640068 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 3744039 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 3926866 39292071 ~ 39370585 (+)

Expression


Co-expression Network