LOC111192675 (LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160)


Basic Information

Item Value
gene id LOC111192675
gene name LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35390808 ~ 35395244 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670561.1
TATTAAAGGAACATGatcctgcagagacagagctcaCACTAGCAGTGGCCGTTTTACACAGAGAGACGTGAGAGTTCCTCACTGTTCTGTTTAATCCGataatattctgttttattgaTCCTGGATTAATCCTGATGATCAGATAACCTCTGACCTGCACCTGACCCGGCCTGATGGACCCAGTCAATATACCAAACATTCCTGATGGTCCAGAAATGCACCCAGCTGGATCTTCAGGAGTTCAGGAGACTCCTCATCCATCTGGACCCAGAGCTCCTCAATCCCGTCCTCCCGGTTTACCAGCGTACGATTCGGTCAGTATCGTTACGACAGGTCCGCTCAACGACACGGACAGCATCCACACTGCTCATCCGGTAACCGACGGCGACAGCATCCAGACTGCTCATCCAGCGTACGACACAGATAGCACCCAAACAGCCCACCTCACCTGCGATACAGACAGCAACCGGACCCTGAACCCGGCGTACGACACGGACAGCACCCGCGCCCTCCACCCGGCCTACGGTCTGGAGCACCTCTCAGCGGAGGGGGGGACTCCAGCTGGAGCTGAAGGAACCACCTGCACAACCAGCAATGCAGTGAATCCCTCTGAAGAACCTCCACCCTACACCCCACCCGACCCCAAACTGGCCTACCTGATCTACCCCCCACCACTGCCCCACTACCCCAACCACCCCGTCATAGCCTGCCAGCCTGGAGCCAACCCTCCTGCCTTCTACCAGCCTTCCTTCCTGCCACCCTCCACCTACCCCTCCTACGCTATATACATGAACGGTCCTCCACTGGGTGAAGAGCAGCAGCCTTTACCCAAAGATTACCTGGTGGAGTCTCTACTGGTGACCATCTTCTGCTGTCTAATGAGTGGCCTGGTTGCTCTGATGTACTCTTATGAAACGCGAGCAGCGCTGGCCCGGGGGGATATCCGCGAGGGCGAGAGGGCGTCTCAGAAAGCTCGTCTGCTGGTGATGTTCAGTCTGATGTTCGGCGTCTTCGTGTTCGTGGGCTGGATCATATACGTGGTTATAGTCGTCTGTGCTTAACACAGTtagattatacagtatataaattatGCAGGTATTTAGAGGACTTTAATAAACTTCAGAAAACACGTCAGAATCACACTGAAGCGTAGAAAACAGGAAGTGAGgacttttaaaaactgattttaaaaggtaaaactgATAAGTGTTCCTTATGTTCCTTGACTGTTTCATTAGATTCACTGTCTAAACTGTACATACTGTCTGAACACTTATTCTatctagatttttttaaatgtgtaacatATATCAGTGTTATTTGAAAtgtaaagatatatatttatatatagaaaaCAGATTTAATGGATTTAACTAGATGGTGAGTTATAACTCATcaattaaaattgtatattCTCA

Function

NR:

description
PREDICTED: proline-rich transmembrane protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670561.1 True 1418 mRNA 0.49 4 35390808 35395244

Neighbor

gene id symbol gene type direction distance location
LOC111192733 NA coding downstream 19848 35367649 ~ 35370960 (-)
LOC103031304 zdhhc12 coding downstream 70020 35316282 ~ 35320788 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding downstream 75235 35310689 ~ 35315573 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 106518 35279823 ~ 35284290 (-)
vdac3 vdac3,LOC107754399,LOC107560056 coding downstream 131576 35246793 ~ 35259232 (-)
pola2 pola2,LOC107710902 coding upstream 560859 35956103 ~ 35964161 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding upstream 621649 36016893 ~ 36070995 (-)
c6h9orf116 LOC103023176 coding upstream 812972 36208216 ~ 36209659 (-)
anapc7 anapc7 coding upstream 937224 36332468 ~ 36340503 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding upstream 949358 36344602 ~ 36385497 (-)
G56620 NA non-coding downstream 23507 35350825 ~ 35367301 (-)
G56602 NA non-coding downstream 111918 35275947 ~ 35278890 (-)
G56600 polb non-coding downstream 118518 35265893 ~ 35272290 (-)
G56580 NA non-coding downstream 213829 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 307535 35081003 ~ 35083273 (-)
G56645 NA non-coding upstream 42589 35437833 ~ 35440647 (-)
G56656 NA non-coding upstream 148467 35543711 ~ 35543995 (-)
G56678 NA non-coding upstream 157592 35552836 ~ 35553987 (-)
G56681 NA non-coding upstream 184737 35579981 ~ 35580235 (-)
G56693 NA non-coding upstream 247561 35642805 ~ 35643064 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other downstream 58374 35321985 ~ 35332434 (-)
c6h22orf39 NA other downstream 91058 35296341 ~ 35299750 (-)
acaa2 acaa2,LOC107671002 other downstream 97387 35285422 ~ 35293421 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 282388 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2213158 33149074 ~ 33177650 (-)
G56638 NA other upstream 25586 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 371526 35766770 ~ 35767677 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other upstream 435968 35831212 ~ 35867084 (-)
mrps36 mrps36 other upstream 533236 35928480 ~ 35947822 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other upstream 576486 35971730 ~ 35992502 (-)

Expression


Co-expression Network