pola2 (pola2,LOC107710902)


Basic Information

Item Value
gene id pola2
gene name pola2,LOC107710902
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35956103 ~ 35964161 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670569.1
TTTTCTCCGTTTTCGCGGCAAACTGAAGCGGAGCTCCAGCACAGTGATGACAGAGCGCGCGCTGCTTTAACGCGGTTAACAGTTtttttttcagatttgtgcACTGGGCTGGTAAGAAGAGCGATGGCGAACGTTACCAGTGAGAAGATAAAGGACGAGCTGGAGACGTTTGATATAACGTGTGAGGATGATGCCGTGCTGGACAAGAtGATGGAGCAGTGCTTATGCCACAGAATTAAAGGAGAGGATATTGTAAATGAGTGGGTGGCTTTCAGCACAACAAAAGGCCTGTTAAAACTCACCGTGAATAATCTAGAGACGTTCGAACATGAGgtTTTGAATAAGAAACATAAAGGCAAAAGCTCATCAAAGGGGAGCAAGATTAACAACACCAGAGATGTGCATTCCATCCAGGACCTAATCAAagcggaggaggaggaagaaaattTACTGGATTCGTATTCAACCCCCGCCAAGGGCTCCCAGAAACGTGCTCTTACCACCCCAGAACATCCTCAGTCTAAGCGCAGTGCTGCTCGCCTCCCCAGTCCCGGTCTGCTGCTCTCTCCTGCCAGCTTCTCCCCCTGCGCGACCCCCTCTCAGAAGTACAGCATGCGTGGAGCTCGGGGGGAGGTGGTGGCCATGTTCGGGGCTGTGCAGGGTCCCCGCTGGTCAGGGAAAGGCCAGACCGCTGTGCAGGTGGATCTGCTCGAGGGACGCGAGGACTCACTCACCAGCTCCTATAAATACATGTTCCAGAGGCTCAGAGATGTGCGAGATGTTCTGACAGAAAAGATTGAAGTCCTGGGGGAGGAGCTGAGGACTCATTTCAATATAGAGGAGTTCTCTCCTGCGTCGCTACCTGCTCAGGACACGATCTCTGTGCTGGGTCAGGTGTGCTGTGACAGTAATGGGAAGCTGAACGCTCAGTCTGTGCTGTTAGAGGCGAGTCAGGAGCACGGGGCCAGACAGGTACCTGTCGATCTGTCTGAGCTCAAAGACTACTCGCTGTTTCCCGGCCAGGTTGTTGTGATGGAAGGTATGAGCACCTCTGGTTCAAGACTTGTCGCCTCCAAACTCTATgagGGTGTTCCCTTACCTTTCTACTCCACTTCAGAGCTAAAGCAGGAAATGAATGAAGGATCTGAGccggtgatggtgatggtggccTGTGGGCCGTACACTCCCTCTGACAGCCTGGCATACGACCCTCTGATCGAcctgattaatattattaataaagacCGCCCGGACGTCTGCATACTGCTTGGACCATTTGTTGATTCTAAGCATGAGCAGATTGAgAAAGGGCAGGACGAAACGTTTGAAACCATCTTCCACAAGTGTGTGGACAGCGTCGTGGATGGAACCAGAGGcacgGGATGCAAGTTGGTGTTAATTCCATCTCAGCGAGATGttcatcatcattacatttaccCTCAGCCTCCGTTCACTCTACCAGATCTAAAGAAGGATGACGTGCAGCGAGTCACGTTGGCCCCTGAGCCGTGCACACTGCTGATTGGTGGAGTAACCTTGGGCTTGACCTCTACAGACATCCTGTTTCACATGGGAGCTGAGGAAATCAGCAGTGCTACTGGCTCGGATCGGTTCTCCAGGATCATGAAGCACATGCTGACTCAGCGCAGctTTTACCCTCTCTACCCCCCTGCTGAGGAGGTTAATATGGATTATGAACGGTTTCAGCAGTACGGCCTGCTGCCCCTAACTCCAGATGTTCTGATCGCCCCCTCTGAACTGCGCTATTTTATTAAGgACGTGATTGGCTGCGTGTGTGTGAATCCAGGGCGTCTAACGAAAGGACAGGTGGGTGGGACCTATGGGAGGTTACTCCTCCAGCAGAACCTGGTGCAGGAGGAGGGGAAGAGAGTGAACCCATGCTTAGCAGCTCAGGTGGTGAAAATCTAAACCCATCGATCAGTATCCAGGTTTCTGTGTGATTTTTGTTTAAGTTCTGCTGCAATTAAATTActtttgtatgtttaattttcttttttatatctgtagtacatttttacactaaggTGAGttgtgacaaaaataaaatgtacagtaattgGA

Function

symbol description
pola2 Predicted to enable DNA binding activity. Acts upstream of or within with a positive effect on cell population proliferation and fin regeneration. Predicted to be located in nucleus. Predicted to be part of alpha DNA polymerase:primase complex. Orthologous to human POLA2 (DNA polymerase alpha 2, accessory subunit).

NR:

description
DNA polymerase alpha subunit B

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02321 POLA2; DNA polymerase alpha subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670569.1 True 2082 mRNA 0.50 21 35956103 35964161

Neighbor

gene id symbol gene type direction distance location
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding downstream 560859 35390808 ~ 35395244 (-)
LOC111192733 NA coding downstream 585143 35367649 ~ 35370960 (-)
LOC103031304 zdhhc12 coding downstream 635315 35316282 ~ 35320788 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding downstream 640530 35310689 ~ 35315573 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 671813 35279823 ~ 35284290 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding upstream 52732 36016893 ~ 36070995 (-)
c6h9orf116 LOC103023176 coding upstream 244055 36208216 ~ 36209659 (-)
anapc7 anapc7 coding upstream 368307 36332468 ~ 36340503 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding upstream 380441 36344602 ~ 36385497 (-)
med27 med27,LOC107665006,LOC107557205,LOC107725311,LOC107757301 coding upstream 448711 36412872 ~ 36492714 (-)
G56914 NA non-coding downstream 64047 35870251 ~ 35892056 (-)
G56916 LOC103027304 non-coding downstream 82075 35871836 ~ 35874028 (-)
G56891 NA non-coding downstream 103670 35784780 ~ 35852433 (-)
G56882 NA non-coding downstream 120172 35745067 ~ 35835931 (-)
G56911 NA non-coding downstream 126231 35827272 ~ 35829872 (-)
G56939 NA non-coding upstream 49246 36013407 ~ 36014123 (-)
G56940 NA non-coding upstream 86217 36050378 ~ 36068161 (-)
G56946 NA non-coding upstream 115626 36079787 ~ 36097997 (-)
G56967 NA non-coding upstream 255720 36219881 ~ 36221207 (-)
G56966 NA non-coding upstream 257298 36221459 ~ 36225010 (-)
mrps36 mrps36 other downstream 8281 35928480 ~ 35947822 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other downstream 89019 35831212 ~ 35867084 (-)
G56887 pxn,pxnb,LOC107748058 other downstream 188426 35766770 ~ 35767677 (-)
G56638 NA other downstream 497229 35420830 ~ 35458874 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other downstream 623669 35321985 ~ 35332434 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other upstream 7569 35971730 ~ 35992502 (-)
unc45b unc45b other upstream 29364 35993525 ~ 36007987 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other upstream 261968 36226129 ~ 36261545 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other upstream 354895 36319056 ~ 36320695 (-)
G57014 NA other upstream 438689 36402850 ~ 36403298 (-)

Expression


Co-expression Network