LOC103035951 (LOC108438364,LOC107598973,LOC107757293)


Basic Information

Item Value
gene id LOC103035951
gene name LOC108438364,LOC107598973,LOC107757293
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36099455 ~ 36205103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670579.1
CACACTCCACTCTGACAACATCAGGGGACCTGGACCTCTccctcatctctttctctctctctctctttctctctcctttcaccactcctcctcttctttctcttctctcttttctttctctcttttctctcggAGCGCTTCACCATGCGGCTGGGAATTTCAGGCTTCATCACGGACATCCTCAGCACCTCCAGCAACATCTGCTTCTGCTGGGCCGATGGAAAGaCCTCAGGAATGGAGGAGACGGTGTGGGAGCAGTACACTGTGACGCTACAGCGAgaTGCTAAGATGGGTTTTGGGATAGCAGTATCTGGGGGTCGGGACAACCCCAACATTGACAGCGGTGAGACCTCCATCATCGTGTCTGATGTTCTGCAGGGTGGTCCGGCTGATGGATTACTCTATGAGAACGACCGGGTTATGCAGGTCAATTCCATCCCTATGGACAATGTGCCTCATTCCTTCGCTGTGCAGCAGCTCCGAAAATGTGGGAAAGTGGCCAAAATAACAGTGAAGAGGCCTCGTAAGGTTGCTGTCCTCAAGCGTCCTCCGTCCCCAGACAGGGACAGTCGGGACTACAACCTGTCCAGTTACTACCAGGACAACCGCAGCACGCACAGCGACCCGGACTCGGACTACCCCCGAGGGAATGGGGGCCTGGGCTACCCCCGAGAGCGCAACCGCAGCCTGGACAAGGCCAACATGAGCTACCTGGACCCGGGTTACGACGCCGGGCGTCGGGAGCGCAGCCGCGGACGCAGCCTGGAGAGATCCCCCAGCCCGGAACGGGGGCACCGACGGGACGGGAGCCGGGGACGCACCCTGGAGCGCGGCGGCAGCCCCGACAGCCGCTACCACCGGCAGCACAGCCGCGGGGACGGGGGGAGTCCTGCGGGAAGCTACGGGAGAGACCCGGGACCAGGATACGACTCCAGGAGATACGAACCACCGCGTTCAGACGACAGGATGATCAGGAGCCACAGCCGAGACCGACTGCAGGACCACTCGCCCTCGCCCAGCAGGGGCCGCGGGAAAGACTGGGGACAACTGGAGCCGTTGGACACGCCCATCAACGTGCTGCTGGTGAAGAACCGGCCCAACGAAGagtacgGTCTCCGATTGGGCAGCCAGATCTTCATCAAAGAGATGACCAGCACTGGACTAGCTGCCAGAGACGGAAGCCTGCAGGAGGGAGACATCATTCTCAAGATTAACGGAACGGTGACGGAGAACCTGTCTCTGAGCGATGCGGGGAAGCTGATCGAGAAGTCTCGGGGAAAGCTGCAGCTGGTGGTGCAGAGGGACCACCGGCAGATCCTGGTGCGAATCCCGGCCCTCGCCGACAGCGACTCGGAGCCCGACGATATCTCAGAGATGGAGTCGTATCACTCGTACTCGCCGCAGGAGGACCAGAGGTCACGGCAGTCTGAcctctcctcacactcctccacCGAGGTGCCGCGGGAGAACGCCAGggaAGACCCACAGATCAGACTCCCCAAGCTGGCTGCTCCTTCTTCTCCCTACAGGGGGGTGGAGGAATCGGCTGCGGTGCAGGAAGAGCCCAAACCAGAGGAACCACCAGCAGCGGTAAAGACTACTCCCAAAATCCTGCTGAGACCGAGTACAGAGGATGAGGAGATGTACGGGGCGAACACTCTGATGGTGAGCTTCCAGAAGGGGGAGAGCGTAGGCCTGAGGCTGGCCGGGGGGAACGACGTGGGCATCTTTGTGGCGGGCGTTCAGGAGGGCAGCCCTGCGGAGGAGGAGGGCCTACGTGTCGGAGATCAGATCATGAAGGTGAATAATGTGGATTTCCGGGGTATAGTGCGTGAAGAGGCGGTGCTGTTCCTGCTGGAGCTGCCCAGAGGAGACAACGTCACCATACTGGCACAGAGCAAACCTGACGTGTATGAAGATATCCTGGTGTCGGGTCGGGGAGACTCCTTCTTCATTCGGACGCACTTCGACTATGAGAAGGAGCTTCCTCAGTGCCTGGCCTTCTGCAGGGGAGACATCTTTAAGGTGGTGGACACGCTGTACGACGGAAAGCTCGGAAACTGGCTGGCCGTCCGAGTGGGAAAAGAGAACCAGCTGCTGGAGAAAGGGATCATCCCCAACAAGAGCAGAGCGGACCAGATGACTAATGTCCAGCACACTCATAAAGGCTCGGGCAGCGACAGGGCTGATTTCTGGAGGATGCGTGGTCAAAGAGCGGCCAAGAAGAAGGATTTACGCAAAAACAGAGAGGATCTCAGCACTGGTCTGGCCTCCACCCGCTTCCCCGCCTACGAACGGGTGGTGCTGCGAGAGGCTGGATTCAGGAGACCCGTGGTGCTGTTTGGACCCATAGCCGACGCTGCCAGTGAGAAACTGGCCACTGAGCTCCCAGATGAGTTTGTTGTTGCCAAAACTGAACCCAAAGATGCTGGATCAGAGAAGTCTTCCGGGGTGGTGCGTCTCAATACCATCCGACAGATTATCgaacagGATAAGCACGCCCTGCTAGATGTGACGCCGAAAGCCGTAGACACGCTGAACTACACTCAGTGGTACCCCATCGTCATCTTCTTCAACCCGGACAGTAAACATGGAGTGAAGGCCATGAGGCAGAGGATCATGCCTAATTCTAACCGCAGTGCCCGAAAGCTCTTCGACCAGGCGCTCAAGCTCAGGAAATCCTGCTCACACCTCTTCACCGCTGTTATCGACCTGAACGCAGCCAACGATGCGTGGTACGGCAGTGTGAAGGAGTGTATTCGGCAGCAGCAGACGCAGGCGGTGTGGGTGTCTGAGGGGAAGCTGGACGGGACAGAGAGGGACCTTGATCTTCACGATGATCGCATGTCTTATCTGTCGGCCATGAGCGCCGACTATCTGAGCATGGACAGCCGCGTGACCAGCGACTACGACGACACGGCGGACGAGGGCGGGACCAACACCGATAACGAGCTCGACGAGCCAATCGAGCGCCAGAGAGTCTCGGCCATCAGCAGATCCTCTGAGCCCGTCATGCCAGAGGAGATCCTCAGGAAGTCCAGCCCGGAGATCCGGTTCCACTCCCGAGCCGGCGTGGCCAGCAGAGCGCCGCAGAGCGAGGGCAGCCCCCCCGTGATGTCCACCTTCCTCCCCGACCCCTCCAAGGTGAAGCTACTAGCTCAAGGGGAAGCATCACGTGGGCACTACAACCCAGTCCGGATGTACGACCATCAGTCCAACCAGCCCCCCAACAGCCCTGTAGCCATTCCAACCAACAGCCCAGCAATCAACGCCACCATCATCCCAACCAGCAACCCAACCAGCAACCCGGGGAACCACCTGGTCAGCCACGAACCCCTCCGGCTCCACGACTCGCCCACCaaacccccaccaccccccGTATCTCTAAAGCCCTCCTCCGTCTCCCGCACCTCCAGAGGGCCAGCGGAAAGCCCACCCCTCAGGGACCATGAGCCCCCAGACGTGAGCCCCGAGGACCCGTCCAAGAGGTCCTTCATGGGCAAACTGAGAGCCTTCGAGAAGATGGACCACATCGCCCGGGCACAGAGGGTACTGGAGCTACAGGAGGCACAGAACGCTCGGGTGGAGATTGCACAGAAGCACCCAGACATCTATGCTGTCCCAAAAAAAGCCCAGAAACTGGACCACAGCAGACCACAGCCTATTGGATCCAGCTCACGTCCGGAGCCCCAGACTCCTCCCTCCAGAGCGCCGTACTCGGAGAACTGTCCGCCCTGCCCCGGCaaagaggaggggggggaggAGCACAGGCGGCGGGCGGCTGACCAATCCAAGCTCGGCTATTATCCAGACGCACACAAATATCAGGACACAGAGCTGTAGAGCCTCCGTCAGCTTCAGCTCCACACATTCTCCACCATTCCACCAGGCTCCGGCCTGCACCCGACTGCTGCACCCGACTGCTGCACCCGA

Function

NR:

description
PREDICTED: tight junction protein ZO-2-like isoform X2

GO: NA

KEGG:

id description
K06098 TJP2, ZO2; tight junction protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670579.1 True 3933 mRNA 0.60 25 36099455 36205103

Neighbor

gene id symbol gene type direction distance location
fxn fxn coding upstream 18002 36072072 ~ 36081453 (+)
dimt1 dimt1,LOC107699721 coding upstream 128524 35965198 ~ 35970931 (+)
cenph cenph coding upstream 143603 35948598 ~ 35955852 (+)
LOC103026321 LOC108443009,LOC108265361,LOC107710916,LOC107599834,LOC107657869 coding upstream 162844 35929155 ~ 35936611 (+)
LOC103027010 plk2,LOC107657898 coding upstream 208361 35878871 ~ 35891094 (+)
ift81 ift81,LOC106585468 coding downstream 57308 36262411 ~ 36289801 (+)
LOC103035335 atp2a2,atp2a2a,LOC107757297,LOC108265716 coding downstream 91175 36296278 ~ 36331569 (+)
ntng2 ntng2,ntng2a,LOC108438355,LOC106585788 coding downstream 288399 36493502 ~ 36585412 (+)
endog endog,LOC107736532 coding downstream 390913 36596016 ~ 36598896 (+)
LOC103040549 NA coding downstream 859296 37064399 ~ 37085499 (+)
G56732 unc45b,LOC106585035 non-coding upstream 98122 35998185 ~ 36001333 (+)
G56712 NA non-coding upstream 187039 35827176 ~ 35912416 (+)
G56707 NA non-coding upstream 262745 35810378 ~ 35836710 (+)
G56673 NA non-coding upstream 491273 35607823 ~ 35608182 (+)
G56672 NA non-coding upstream 515354 35583886 ~ 35584101 (+)
G56764 NA non-coding downstream 14792 36219895 ~ 36221204 (+)
G56767 fnbp1,LOC108264955 non-coding downstream 22134 36227237 ~ 36227653 (+)
G56786 rapgef1,LOC108265900 non-coding downstream 142523 36347626 ~ 36353279 (+)
G56811 NA non-coding downstream 206827 36411930 ~ 36412215 (+)
G56812 NA non-coding downstream 207322 36412425 ~ 36412757 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 134945 35956104 ~ 35964510 (+)
G56504 NA other upstream 640578 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 815184 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 826927 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 1110170 34961800 ~ 34989285 (+)
G57066 NA other downstream 800170 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 2904141 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 3086968 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 3761987 39967090 ~ 40090271 (+)
G57664 NA other downstream 3839550 40044653 ~ 40046467 (+)

Expression


Co-expression Network