ift81 (ift81,LOC106585468)


Basic Information

Item Value
gene id ift81
gene name ift81,LOC106585468
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36262411 ~ 36289801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670580.1
CTTGTGATAACTTCCGGTTAGCAACCGCGAGCAGCTTTTCTGTTTCTAGGCATTTTCAGTCAGAGCTTATCGCGAGCTTTTAgcgatattaaatattaatactgatataaagagagaaaaacaacgCGAACTCTGGGAGCTATGTGTATTAAAGTAttaactaactagttagttagctagtgtcGCTAGCCAGGAGACTAGTCTAAGAGCAGGGTTGCCTAGCGACCGTAAAGGGCTAGTTCTGTTTCGCTAACGagttagcctagcctagcttagctatTTAACTCGCTGGTTATATAGCGTTATATAGCTGTAAgggtttaatctgtgtattTTTGGCAAAGTAAAGAAATCTTGTGAAAATGAGCGAACAGCTGAAGTTTATAGTGGAGCAACTGAACCGGGAGCCGTTTAAGAAAAACTTTAATCTGATCACATTTGACTCATTAGAGCCgattcagcttctgcagactcTGAATGATGTTCTGGCAGAAATTGACAGTAAGCAAGCAATTGACATCCGTGAAGAAATGCCTGACCAGACAGCCAAAAGAATGTTTACTCTGTTGGGTTTGTTAAAATACAAGCCTTCAGGAGGTCTTACTGACGCAAGCAGCTTCCGTCAGGGGCTGGTAACTGGCAGTAAGCCAGTGATTCACCCCATCCTTCACTGGCTGCTGCAGAGAGTTCCTGAGCTAAAGAAAAGAGCCTATCTGGCTCGCTTCCTCGTCAAGCTGGACGTGCCTGGCGAGTTCCTGACTGATGACGTAATCTCAGACACCTACCACCAGTACGAGGAGTTGGTAGAGGGATTTAAGACTTATCATAAGGAGTGTGAACAGCTGAGGAACTCTGGGTTTTCTACAGCTGAGATTCGACGGGATATTGCAGCCATGGAGGAAGAGAAGGATCAGCTGATTAAACGAGTGGAGCGTCTGAGAAAACGGGTGGAGTCTGTGTCTAATCACCAGCGCATGCTGGAACTGGCCCGACAGCTCCGAgtggaaaaggagagagaggagtcTCTGGCTCATCAGAAACAGGAGCAGAAGAACCAGCTCTTCCAGGCCGAGCAGAGGCTGCAGAGGTGTCAGATCCAGCTGAAAGACCTGCGACAGGCAGCAGCAGATGCCAAGCCTGAGAGCCTGGTGaagagactggaggaggagatcAAGTTTAACTCCTACATGGTATCGGACAAGCTGCCCAAAGAGCTGGAGCGAATGCGCCGCAAGGTGCGCTACCTACAGAAGGTGGCGTCTGAGCCGGCCATGGGTCACGCAGAGCTGGCTGAGCTGGAGGAGAAGATTAAACAGCTAAGTCAGGCAAACCAGGAGATGGAGAAGAAGATGACCAGGACTGACCCGATGGATGATAATCTCACTCTGTACAGGCAGCAGGCCTCCATCATAGCCCGAAAGAAAGAGGCCAAGGCTGAGGAGGTGCAGGAGTCTCGGGAGGAACTGGCGGCCGTGTCGAGGGAAGTGAGCTCTAAGAGCAGCCAGGCTCGCGGGCAGGGAGGGGTGGAGATCATCCGCACAGATGAGTTTAAGCGCTACGTTTCCAAGATGCGCGGCAAGAACATCACGTATAAGAAGAAGCGTCAGGAGATTGCAGAGCTGAAGTCTGAGTTTGGCATCCTGCAGCGGACTGAGGAGATCCTGCGTCAGCGCCACACTGCCGAGCAACAGCAACTGCAATCTCTGGAGGCTCAGAAGGGAATCTCTGGATTTAGTGAAACTCAGGAGGAGCTGGAGAGAGTTTCAGCCATCAAGAGTGAGCTGGACGAGCTGAAGGGACGCACACTGGATGACATGTCCGAGATGGTGAAGAAGCTAAATTCTGCTATAGCAGATAAGAAAACAGCTCTTTCTCCACTAATAAAGGAGCTGAGGCCTCTCAGACAGCAGTGCCAGGAACTAGCTCAGGAGtatgaggaaaaaaaagctcAATATGATACCTGTGCTGCCGGCCTGGAGAGCAACAGATCCAAGCTGGAGCAGGAGGTGAGGGTCCTGCGGGAGGAGACGGCTCAGGAGGAGAATCGGTATCACTACATCAACTCCATGAAAGAGATCATTGATATACAAATGCAGCGGGCAGCAGACGAGATGAAGGTGTACGTGTCCTCTGATCCACAGACGCGGAAGAAGTCCATCAGAGAGCAGTACATGAAGAACATAGCAGAGCAGGAGTCTTTGGGAAAGAAGCTcagagagcagcagaagcaggtGAAGGAGAGCCACGGACCCAACATGAGGCAGGTGCGCATGTGGAAAGATCTGGAGCAGCTGCTGGAGTGTAAGAAGCAGTGCTACCTGCGAGCTCAGAGCCAGGCCTCCATCGGCCAGGTGATCCAGGACAGCGGAGAGGACCGTCTGGTTCTCTGATATAACCACTGAGCACCCAAACCAGTTTATACAGCTTTATAACACTAGTACGCACAGTTATACACTCTTAAACACTTAACAATGGGTCAGAGTAACGA

Function

symbol description
ift81 Predicted to enable tubulin binding activity. Acts upstream of or within pronephros development and regulation of TOR signaling. Predicted to be located in motile cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Is expressed in notochord; otic vesicle; pronephric duct; and ventricular system. Human ortholog(s) of this gene implicated in short-rib thoracic dysplasia 19 with or without polydactyly. Orthologous to human IFT81 (intraflagellar transport 81).

NR:

description
intraflagellar transport protein 81 homolog

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0005929 cilium cellular_component

KEGG:

id description
K19677 IFT81; intraflagellar transport protein 81

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670580.1 True 2488 mRNA 0.50 18 36262411 36289801

Neighbor

gene id symbol gene type direction distance location
LOC103035951 LOC108438364,LOC107598973,LOC107757293 coding upstream 57308 36099455 ~ 36205103 (+)
fxn fxn coding upstream 180958 36072072 ~ 36081453 (+)
dimt1 dimt1,LOC107699721 coding upstream 291480 35965198 ~ 35970931 (+)
cenph cenph coding upstream 306559 35948598 ~ 35955852 (+)
LOC103026321 LOC108443009,LOC108265361,LOC107710916,LOC107599834,LOC107657869 coding upstream 325800 35929155 ~ 35936611 (+)
LOC103035335 atp2a2,atp2a2a,LOC107757297,LOC108265716 coding downstream 6477 36296278 ~ 36331569 (+)
ntng2 ntng2,ntng2a,LOC108438355,LOC106585788 coding downstream 203701 36493502 ~ 36585412 (+)
endog endog,LOC107736532 coding downstream 306215 36596016 ~ 36598896 (+)
LOC103040549 NA coding downstream 774598 37064399 ~ 37085499 (+)
LOC111192679 NA coding downstream 796641 37086442 ~ 37091387 (+)
G56756 NA non-coding upstream 18686 36171914 ~ 36243725 (+)
G56767 fnbp1,LOC108264955 non-coding upstream 34758 36227237 ~ 36227653 (+)
G56764 NA non-coding upstream 41207 36219895 ~ 36221204 (+)
G56749 NA non-coding upstream 51146 36201442 ~ 36211265 (+)
G56753 NA non-coding upstream 110921 36129056 ~ 36151490 (+)
G56786 rapgef1,LOC108265900 non-coding downstream 57825 36347626 ~ 36353279 (+)
G56811 NA non-coding downstream 122129 36411930 ~ 36412215 (+)
G56812 NA non-coding downstream 122624 36412425 ~ 36412757 (+)
G56836 NA non-coding downstream 270964 36560765 ~ 36579538 (+)
G56837 NA non-coding downstream 271579 36561380 ~ 36634827 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 297901 35956104 ~ 35964510 (+)
G56504 NA other upstream 803534 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 978140 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 989883 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 1273126 34961800 ~ 34989285 (+)
G57066 NA other downstream 715472 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 2819443 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 3002270 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 3677289 39967090 ~ 40090271 (+)
G57664 NA other downstream 3754852 40044653 ~ 40046467 (+)

Expression


Co-expression Network